HEADER ISOMERASE 18-JAN-11 3QDF TITLE CRYSTAL STRUCTURE OF 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE TITLE 2 FROM MYCOBACTERIUM MARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.3.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: M; SOURCE 5 GENE: MMAR_1718; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, 2- KEYWDS 2 HYDROXYHEPTA-2, 4-DIENE-1, 7-DIOATE ISOMERASE, MYCOBACTERIUM, KEYWDS 3 TUBERCULOSIS, NON-PATHOGENIC SPECIES, RV2993C ORTHOLOG, KEYWDS 4 HOMOPROTOCATECHUATE DEGRADATIVE PATHWAY, 4-DIENEDIOATE, 2-OXOHEPT-3- KEYWDS 5 ENEDIOATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3QDF 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 3QDF 1 JRNL VERSN REVDAT 1 02-FEB-11 3QDF 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 21644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1381 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1935 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2643 ; 1.377 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 6.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;37.929 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 296 ;13.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.091 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1466 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1263 ; 0.620 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2050 ; 1.073 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 672 ; 1.668 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 590 ; 2.717 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9664 0.5843 53.6786 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.0524 REMARK 3 T33: 0.0409 T12: 0.0315 REMARK 3 T13: -0.0006 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.9107 L22: 1.2503 REMARK 3 L33: 1.5750 L12: -0.1842 REMARK 3 L13: 0.1073 L23: -0.1899 REMARK 3 S TENSOR REMARK 3 S11: 0.1154 S12: 0.1135 S13: -0.0637 REMARK 3 S21: -0.2182 S22: -0.0853 S23: -0.0003 REMARK 3 S31: 0.0153 S32: 0.0335 S33: -0.0302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21732 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 2DFU MOLECULE A, PROTEIN ONLY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYMAA.00471.A.A1 PW30262 AT 26.1 MG/ML REMARK 280 AGAINST PACT SCREEN CONDITION A12, 10 MM ZNCL2, 0.1 M NAOAC PH REMARK 280 5.0, 20% PEG 6000 AND CRYO-PROTECTED WITH 25% ETHYLENE GLYCOL, REMARK 280 CRYSTAL TRACKING ID 218461A12, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.85000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.46500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.48500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.46500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.85000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ASP A 72 REMARK 465 HIS A 73 REMARK 465 ILE A 74 REMARK 465 ALA A 75 REMARK 465 GLU A 76 REMARK 465 MET A 77 REMARK 465 GLY A 78 REMARK 465 GLY A 79 REMARK 465 GLN A 80 REMARK 465 THR A 81 REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 THR A 84 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 THR A 71 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 33 -63.57 -91.75 REMARK 500 LYS A 68 101.86 -44.64 REMARK 500 THR A 169 -1.18 81.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 266 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 117 OE2 REMARK 620 2 GLU A 119 OE2 88.0 REMARK 620 3 ASP A 148 OD2 81.3 115.2 REMARK 620 4 EDO A 268 O1 87.5 120.9 122.2 REMARK 620 5 HOH A 412 O 176.3 90.3 96.4 96.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 267 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 187 OE1 REMARK 620 2 HIS A 199 NE2 99.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 270 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYMAA.00471.A RELATED DB: TARGETDB DBREF 3QDF A 1 264 UNP B2HIH3 B2HIH3_MYCMM 1 264 SEQADV 3QDF GLY A -3 UNP B2HIH3 EXPRESSION TAG SEQADV 3QDF PRO A -2 UNP B2HIH3 EXPRESSION TAG SEQADV 3QDF GLY A -1 UNP B2HIH3 EXPRESSION TAG SEQADV 3QDF SER A 0 UNP B2HIH3 EXPRESSION TAG SEQRES 1 A 268 GLY PRO GLY SER MET ARG LEU GLY ARG ILE ALA SER PRO SEQRES 2 A 268 ASP GLY VAL ALA PHE ALA SER ILE GLU GLY GLU LEU ASP SEQRES 3 A 268 ASN PRO GLY ALA MET THR ALA ARG GLU ILE ALA GLU HIS SEQRES 4 A 268 PRO PHE GLY THR PRO ASN PHE THR GLY ARG SER TRP PRO SEQRES 5 A 268 LEU ALA ASP VAL ARG LEU LEU ALA PRO ILE LEU ALA SER SEQRES 6 A 268 LYS VAL VAL CYS VAL GLY LYS ASN TYR THR ASP HIS ILE SEQRES 7 A 268 ALA GLU MET GLY GLY GLN THR GLY PRO THR PRO ALA ASP SEQRES 8 A 268 PRO VAL ILE PHE LEU LYS PRO ASN THR ALA ILE VAL GLY SEQRES 9 A 268 PRO ASN VAL PRO ILE ARG LEU PRO ALA ASN ALA SER PRO SEQRES 10 A 268 VAL HIS PHE GLU GLY GLU LEU ALA ILE VAL ILE GLY ARG SEQRES 11 A 268 PRO CYS LYS ASP VAL SER ALA ALA GLN ALA VAL ASP ASN SEQRES 12 A 268 ILE LEU GLY TYR THR ILE GLY ASN ASP VAL SER ALA ARG SEQRES 13 A 268 ASP GLN GLN LYS SER ASP GLY GLN TRP THR ARG ALA LYS SEQRES 14 A 268 GLY HIS ASP THR PHE CYS PRO VAL GLY PRO TRP ILE VAL SEQRES 15 A 268 THR ASP VAL ASP PRO ALA ASP LEU GLU LEU ARG THR GLU SEQRES 16 A 268 VAL ASN GLY ALA VAL LYS GLN HIS ALA ARG THR SER LEU SEQRES 17 A 268 MET ILE HIS ASP VAL GLY ALA ILE VAL GLU TRP ILE SER SEQRES 18 A 268 ALA VAL MET THR LEU LEU PRO GLY ASP LEU ILE LEU THR SEQRES 19 A 268 GLY THR PRO ALA GLY VAL GLY PRO ILE GLU ASP GLY ASP SEQRES 20 A 268 THR VAL SER ILE THR ILE GLU GLY ILE GLY THR LEU THR SEQRES 21 A 268 ASN PRO VAL VAL ARG LYS GLY LYS HET ZN A 266 1 HET ZN A 267 1 HET EDO A 268 4 HET EDO A 269 4 HET EDO A 270 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *191(H2 O) HELIX 1 1 ASN A 23 ALA A 26 5 4 HELIX 2 2 ALA A 50 VAL A 52 5 3 HELIX 3 3 PRO A 94 THR A 96 5 3 HELIX 4 4 SER A 132 ASP A 138 5 7 HELIX 5 5 ARG A 152 GLY A 159 1 8 HELIX 6 6 TRP A 161 GLY A 166 1 6 HELIX 7 7 ASP A 182 ASP A 185 5 4 HELIX 8 8 SER A 203 MET A 205 5 3 HELIX 9 9 ASP A 208 MET A 220 1 13 SHEET 1 A10 ASN A 41 PRO A 48 0 SHEET 2 A10 THR A 28 GLU A 34 -1 N ALA A 29 O TRP A 47 SHEET 3 A10 GLY A 11 GLU A 18 -1 N SER A 16 O ARG A 30 SHEET 4 A10 ARG A 2 SER A 8 -1 N SER A 8 O GLY A 11 SHEET 5 A10 CYS A 171 VAL A 178 -1 O ILE A 177 N LEU A 3 SHEET 6 A10 ILE A 140 ASN A 147 -1 N TYR A 143 O VAL A 178 SHEET 7 A10 GLY A 118 ILE A 124 -1 N ALA A 121 O THR A 144 SHEET 8 A10 LEU A 227 LEU A 229 -1 O ILE A 228 N ILE A 122 SHEET 9 A10 VAL A 63 VAL A 66 1 N VAL A 64 O LEU A 227 SHEET 10 A10 ILE A 90 LYS A 93 -1 O PHE A 91 N CYS A 65 SHEET 1 B 4 ARG A 53 LEU A 55 0 SHEET 2 B 4 ARG A 2 SER A 8 -1 N ARG A 5 O LEU A 55 SHEET 3 B 4 CYS A 171 VAL A 178 -1 O ILE A 177 N LEU A 3 SHEET 4 B 4 ILE A 98 VAL A 99 1 N VAL A 99 O VAL A 173 SHEET 1 C 5 ILE A 105 LEU A 107 0 SHEET 2 C 5 GLY A 253 ARG A 261 1 O VAL A 260 N LEU A 107 SHEET 3 C 5 THR A 244 ILE A 249 -1 N ILE A 247 O LEU A 255 SHEET 4 C 5 GLU A 187 VAL A 192 -1 N ARG A 189 O THR A 248 SHEET 5 C 5 ALA A 195 ARG A 201 -1 O ALA A 200 N LEU A 188 SHEET 1 D 3 SER A 150 ALA A 151 0 SHEET 2 D 3 VAL A 114 PHE A 116 -1 N HIS A 115 O SER A 150 SHEET 3 D 3 GLY A 237 PRO A 238 -1 O GLY A 237 N PHE A 116 LINK OE2 GLU A 117 ZN ZN A 266 1555 1555 2.28 LINK OE2 GLU A 119 ZN ZN A 266 1555 1555 2.02 LINK OD2 ASP A 148 ZN ZN A 266 1555 1555 2.12 LINK OE1 GLU A 187 ZN ZN A 267 1555 1555 2.14 LINK NE2 HIS A 199 ZN ZN A 267 1555 1555 2.08 LINK ZN ZN A 266 O1 EDO A 268 1555 1555 2.13 LINK ZN ZN A 266 O HOH A 412 1555 1555 2.28 CISPEP 1 SER A 112 PRO A 113 0 -8.07 CISPEP 2 GLY A 174 PRO A 175 0 3.74 SITE 1 AC1 5 GLU A 117 GLU A 119 ASP A 148 EDO A 268 SITE 2 AC1 5 HOH A 412 SITE 1 AC2 4 GLU A 20 ASP A 22 GLU A 187 HIS A 199 SITE 1 AC3 7 VAL A 66 GLU A 117 GLU A 119 ARG A 152 SITE 2 AC3 7 GLN A 155 LYS A 165 ZN A 266 SITE 1 AC4 5 PRO A 175 TRP A 176 GLY A 253 THR A 254 SITE 2 AC4 5 HOH A 359 SITE 1 AC5 9 LYS A 129 ASP A 130 ASP A 168 SER A 217 SITE 2 AC5 9 ALA A 218 VAL A 219 LYS A 262 HOH A 321 SITE 3 AC5 9 HOH A 325 CRYST1 47.700 104.930 136.970 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007301 0.00000