HEADER PROTEIN TRANSPORT/TOXIN 19-JAN-11 3QDR TITLE STRUCTURAL CHARACTERIZATION OF THE INTERACTION OF COLICIN A, COLICIN TITLE 2 N, AND TOLB WITH THE TOLAIII TRANSLOCON COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TOLA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TOLA DOMAIN III, RESIDUES 302-421; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COLICIN-A; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: COLA, RESIDUES 53-107; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: TOLA, CIM, EXCC, LKY, B0739, JW0729; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: CITROBACTER FREUNDII; SOURCE 13 ORGANISM_TAXID: 546; SOURCE 14 GENE: CAA, COLA; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS COLA, TOLA, COMPLEX, TRANSLOCATION, COLA BINDS TO TOLA, METHYLATION, KEYWDS 2 PROTEIN TRANSPORT-TOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.LI REVDAT 3 20-JUN-12 3QDR 1 JRNL REVDAT 2 09-MAY-12 3QDR 1 JRNL REVDAT 1 25-JAN-12 3QDR 0 JRNL AUTH C.LI,Y.ZHANG,M.VANKEMMELBEKE,O.HECHT,F.S.ALEANIZY, JRNL AUTH 2 C.MACDONALD,G.R.MOORE,R.JAMES,C.N.PENFOLD JRNL TITL STRUCTURAL EVIDENCE THAT COLICIN A PROTEIN BINDS TO A NOVEL JRNL TITL 2 BINDING SITE OF TOLA PROTEIN IN ESCHERICHIA COLI PERIPLASM. JRNL REF J.BIOL.CHEM. V. 287 19048 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22493500 JRNL DOI 10.1074/JBC.M112.342246 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 4973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 234 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 12 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1053 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.51000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.928 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.350 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.891 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1098 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1495 ; 1.867 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 144 ; 8.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 42 ;40.683 ;25.952 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 170 ;23.886 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;17.891 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 165 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 841 ; 0.010 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 718 ; 0.594 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1152 ; 1.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 380 ; 1.529 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 342 ; 2.476 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 332 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6852 29.2459 1.5180 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1703 REMARK 3 T33: 0.2216 T12: 0.0124 REMARK 3 T13: 0.1018 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 1.0773 L22: 2.2112 REMARK 3 L33: 2.3780 L12: 0.5718 REMARK 3 L13: 1.5227 L23: 0.7030 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.3592 S13: 0.0074 REMARK 3 S21: -0.4545 S22: 0.0205 S23: -0.5973 REMARK 3 S31: -0.1050 S32: 0.6009 S33: 0.0274 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6200 34.0455 14.6216 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.0134 REMARK 3 T33: 0.0307 T12: -0.0307 REMARK 3 T13: 0.0257 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.0768 L22: 1.7503 REMARK 3 L33: 0.1719 L12: -0.2787 REMARK 3 L13: -0.3353 L23: 0.0571 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: -0.0226 S13: 0.1453 REMARK 3 S21: -0.0427 S22: -0.0153 S23: -0.1142 REMARK 3 S31: -0.1263 S32: 0.0354 S33: -0.0573 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 361 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4992 24.9480 17.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0476 REMARK 3 T33: 0.0415 T12: -0.0088 REMARK 3 T13: 0.0066 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.9844 L22: 0.2263 REMARK 3 L33: 0.9637 L12: 0.1300 REMARK 3 L13: 0.4467 L23: -0.2447 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: -0.1160 S13: 0.0803 REMARK 3 S21: 0.1071 S22: -0.0390 S23: 0.0207 REMARK 3 S31: -0.0162 S32: -0.0260 S33: 0.0070 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4009 18.1856 5.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.1234 REMARK 3 T33: 0.1197 T12: -0.0116 REMARK 3 T13: -0.0218 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.1273 L22: 1.4375 REMARK 3 L33: 6.2587 L12: -0.2738 REMARK 3 L13: -0.6583 L23: 2.8565 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.1094 S13: -0.0056 REMARK 3 S21: -0.0877 S22: -0.0785 S23: 0.1436 REMARK 3 S31: -0.0968 S32: -0.3429 S33: 0.0650 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 376 A 395 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9797 24.9949 21.6472 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.0406 REMARK 3 T33: 0.0471 T12: -0.0021 REMARK 3 T13: 0.0240 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.1630 L22: 0.0589 REMARK 3 L33: 0.7790 L12: 0.2212 REMARK 3 L13: 0.8881 L23: 0.2018 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.0144 S13: -0.0729 REMARK 3 S21: 0.0394 S22: -0.0004 S23: -0.0099 REMARK 3 S31: 0.1022 S32: 0.0142 S33: -0.0147 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 396 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9697 24.5869 5.5973 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0278 REMARK 3 T33: 0.0411 T12: 0.0009 REMARK 3 T13: -0.0058 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.1970 L22: 0.2566 REMARK 3 L33: 4.7023 L12: -0.8639 REMARK 3 L13: -3.8614 L23: 1.0459 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: 0.0394 S13: 0.0796 REMARK 3 S21: -0.0467 S22: -0.0204 S23: -0.0015 REMARK 3 S31: -0.0918 S32: -0.0380 S33: -0.0656 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 406 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0248 23.6675 9.6470 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0316 REMARK 3 T33: 0.0439 T12: 0.0062 REMARK 3 T13: -0.0217 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.9107 L22: 0.6152 REMARK 3 L33: 1.1067 L12: -0.3556 REMARK 3 L13: -0.1599 L23: -0.6833 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0833 S13: 0.0592 REMARK 3 S21: 0.0389 S22: 0.0331 S23: -0.0457 REMARK 3 S31: -0.0098 S32: 0.0224 S33: -0.0300 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6391 7.6222 12.0794 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.1533 REMARK 3 T33: 0.1454 T12: 0.0115 REMARK 3 T13: 0.0065 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0197 L22: 0.0276 REMARK 3 L33: 0.0613 L12: 0.0204 REMARK 3 L13: -0.0214 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.0257 S13: -0.0471 REMARK 3 S21: -0.0128 S22: 0.0000 S23: -0.0623 REMARK 3 S31: 0.0440 S32: 0.0879 S33: 0.0160 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7613 8.5367 3.0594 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.1429 REMARK 3 T33: 0.1388 T12: 0.0035 REMARK 3 T13: 0.0043 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.0093 L22: 0.0332 REMARK 3 L33: 0.0287 L12: -0.0046 REMARK 3 L13: 0.0156 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0357 S13: 0.0083 REMARK 3 S21: -0.0395 S22: -0.0081 S23: -0.0558 REMARK 3 S31: 0.0159 S32: 0.0620 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 75 B 83 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8199 8.7307 8.0715 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.1693 REMARK 3 T33: 0.1510 T12: 0.0178 REMARK 3 T13: -0.0093 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.1163 L22: 0.4060 REMARK 3 L33: 1.2711 L12: -0.1668 REMARK 3 L13: 0.2609 L23: -0.6135 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: 0.1063 S13: 0.0027 REMARK 3 S21: -0.1570 S22: -0.0536 S23: 0.0338 REMARK 3 S31: 0.0476 S32: 0.0321 S33: 0.0072 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 84 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2074 13.9686 18.4317 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.1336 REMARK 3 T33: 0.1431 T12: 0.0143 REMARK 3 T13: -0.0206 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.4533 L22: 0.3445 REMARK 3 L33: 1.4088 L12: 0.2811 REMARK 3 L13: 0.6180 L23: 0.4242 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.1147 S13: -0.0348 REMARK 3 S21: -0.1192 S22: 0.0269 S23: 0.0940 REMARK 3 S31: 0.0405 S32: -0.0718 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2671 15.9701 19.5001 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0971 REMARK 3 T33: 0.0949 T12: 0.0072 REMARK 3 T13: 0.0049 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.5403 L22: 1.6694 REMARK 3 L33: 2.2344 L12: -0.6971 REMARK 3 L13: -0.5091 L23: -0.2353 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.1100 S13: -0.1102 REMARK 3 S21: -0.1123 S22: -0.0100 S23: 0.1328 REMARK 3 S31: 0.1520 S32: -0.1117 S33: -0.0132 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 98 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7434 5.1534 20.6471 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.2787 REMARK 3 T33: 0.2150 T12: 0.0194 REMARK 3 T13: -0.0132 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 0.2021 L22: 0.4959 REMARK 3 L33: 1.8915 L12: -0.0340 REMARK 3 L13: 0.0601 L23: -0.7769 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: -0.2144 S13: -0.1241 REMARK 3 S21: 0.2149 S22: 0.0942 S23: -0.0170 REMARK 3 S31: -0.0152 S32: -0.1650 S33: -0.0742 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-11. REMARK 100 THE RCSB ID CODE IS RCSB063516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-09; 12-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 298; 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID23-2; ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726; 0.9795 REMARK 200 MONOCHROMATOR : HORIZONTALLY DIFFRACTING REMARK 200 MONOCHROMATOR; CHANNEL CUT ESRF REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; ADSC REMARK 200 QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5238 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 59.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.12900 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : 0.45400 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M K2HPO4, 2.2 M AMMONIUM SULPHATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.74850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.81200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.74850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.81200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 MET A 301 REMARK 465 SER A 302 REMARK 465 SER A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 ASN A 306 REMARK 465 ALA A 307 REMARK 465 PRO A 308 REMARK 465 LYS A 309 REMARK 465 THR A 310 REMARK 465 GLY A 311 REMARK 465 GLY A 312 REMARK 465 GLY A 313 REMARK 465 ALA A 314 REMARK 465 LYS A 315 REMARK 465 GLY A 316 REMARK 465 ASN A 317 REMARK 465 ASN A 318 REMARK 465 ALA A 319 REMARK 465 SER A 320 REMARK 465 PRO A 321 REMARK 465 ALA A 322 REMARK 465 GLY A 323 REMARK 465 SER A 324 REMARK 465 GLY A 325 REMARK 465 ASN A 326 REMARK 465 THR A 327 REMARK 465 LYS A 328 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 LYS B 53 REMARK 465 PRO B 54 REMARK 465 GLY B 55 REMARK 465 ASP B 56 REMARK 465 VAL B 106 REMARK 465 SER B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 415 140.20 -171.52 REMARK 500 ASN B 68 -129.01 56.44 REMARK 500 TYR B 90 110.39 -166.46 REMARK 500 LEU B 98 -75.52 -117.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE B 67 19.7 L L OUTSIDE RANGE REMARK 500 LEU B 98 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QDP RELATED DB: PDB DBREF 3QDR A 302 421 UNP P19934 TOLA_ECOLI 302 421 DBREF 3QDR B 53 107 UNP P04480 CEA_CITFR 53 107 SEQADV 3QDR HIS A 295 UNP P19934 EXPRESSION TAG SEQADV 3QDR HIS A 296 UNP P19934 EXPRESSION TAG SEQADV 3QDR HIS A 297 UNP P19934 EXPRESSION TAG SEQADV 3QDR HIS A 298 UNP P19934 EXPRESSION TAG SEQADV 3QDR HIS A 299 UNP P19934 EXPRESSION TAG SEQADV 3QDR HIS A 300 UNP P19934 EXPRESSION TAG SEQADV 3QDR MET A 301 UNP P19934 EXPRESSION TAG SEQADV 3QDR GLY B 51 UNP P04480 EXPRESSION TAG SEQADV 3QDR SER B 52 UNP P04480 EXPRESSION TAG SEQADV 3QDR HIS B 108 UNP P04480 EXPRESSION TAG SEQADV 3QDR HIS B 109 UNP P04480 EXPRESSION TAG SEQADV 3QDR HIS B 110 UNP P04480 EXPRESSION TAG SEQADV 3QDR HIS B 111 UNP P04480 EXPRESSION TAG SEQADV 3QDR HIS B 112 UNP P04480 EXPRESSION TAG SEQADV 3QDR HIS B 113 UNP P04480 EXPRESSION TAG SEQRES 1 A 127 HIS HIS HIS HIS HIS HIS MET SER SER GLY LYS ASN ALA SEQRES 2 A 127 PRO LYS THR GLY GLY GLY ALA LYS GLY ASN ASN ALA SER SEQRES 3 A 127 PRO ALA GLY SER GLY ASN THR LYS ASN ASN GLY ALA SER SEQRES 4 A 127 GLY ALA ASP ILE ASN ASN TYR ALA GLY GLN ILE LYS SER SEQRES 5 A 127 ALA ILE GLU SER MLY PHE TYR ASP ALA SER SER TYR ALA SEQRES 6 A 127 GLY LYS THR CYS THR LEU ARG ILE LYS LEU ALA PRO ASP SEQRES 7 A 127 GLY MET LEU LEU ASP ILE LYS PRO GLU GLY GLY ASP PRO SEQRES 8 A 127 ALA LEU CYS GLN ALA ALA LEU ALA ALA ALA LYS LEU ALA SEQRES 9 A 127 LYS ILE PRO LYS PRO PRO SER GLN ALA VAL TYR GLU VAL SEQRES 10 A 127 PHE LYS ASN ALA PRO LEU ASP PHE LYS PRO SEQRES 1 B 63 GLY SER LYS PRO GLY ASP SER TYR ASN THR PRO TRP GLY SEQRES 2 B 63 LYS VAL ILE ILE ASN ALA ALA GLY GLN PRO THR MET ASN SEQRES 3 B 63 GLY THR VAL MET THR ALA ASP ASN SER SER MET VAL PRO SEQRES 4 B 63 TYR GLY ARG GLY PHE THR ARG VAL LEU ASN SER LEU VAL SEQRES 5 B 63 ASN ASN PRO VAL SER HIS HIS HIS HIS HIS HIS MODRES 3QDR MLY A 351 LYS N-DIMETHYL-LYSINE HET MLY A 351 11 HET TRS A 501 8 HETNAM MLY N-DIMETHYL-LYSINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 1 MLY C8 H18 N2 O2 FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 HOH *26(H2 O) HELIX 1 1 ALA A 332 SER A 350 1 19 HELIX 2 2 ASP A 354 ALA A 359 5 6 HELIX 3 3 ASP A 384 LYS A 396 1 13 HELIX 4 4 SER A 405 LYS A 413 1 9 SHEET 1 A 5 ALA A 415 PHE A 419 0 SHEET 2 A 5 CYS A 363 LEU A 369 -1 N CYS A 363 O PHE A 419 SHEET 3 A 5 LEU A 375 GLY A 383 -1 O LYS A 379 N ARG A 366 SHEET 4 A 5 GLY B 93 VAL B 97 -1 O PHE B 94 N ILE A 378 SHEET 5 A 5 SER B 86 TYR B 90 -1 N VAL B 88 O THR B 95 SHEET 1 B 4 TYR B 58 THR B 60 0 SHEET 2 B 4 GLY B 63 ILE B 66 -1 O VAL B 65 N TYR B 58 SHEET 3 B 4 THR B 74 MET B 75 -1 O THR B 74 N ILE B 66 SHEET 4 B 4 THR B 78 VAL B 79 -1 O THR B 78 N MET B 75 SSBOND 1 CYS A 363 CYS A 388 1555 1555 2.90 LINK C SER A 350 N MLY A 351 1555 1555 1.33 LINK C MLY A 351 N PHE A 352 1555 1555 1.34 SITE 1 AC1 5 PHE A 352 TYR A 353 ASP A 354 SER A 356 SITE 2 AC1 5 ARG A 366 CRYST1 47.497 119.624 30.147 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.033171 0.00000