HEADER SUGAR BINDING PROTEIN 19-JAN-11 3QDU TITLE STRUCTURE OF BOLETUS EDULIS LECTIN IN COMPLEX WITH N,N-DIACETYL TITLE 2 CHITOBIOSE CAVEAT 3QDU NAG E 1 HAS WRONG CHIRALITY AT ATOM C4 NAG F 1 HAS WRONG CAVEAT 2 3QDU CHIRALITY AT ATOM C4 NAG G 1 HAS WRONG CHIRALITY AT ATOM C4 CAVEAT 3 3QDU NAG H 1 HAS WRONG CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOLETUS EDULIS LECTIN; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOLETUS EDULIS; SOURCE 3 ORGANISM_TAXID: 36056 KEYWDS BOLETUS EDULIS, LECTIN, MUSHROOM, T-ANTIGEN DISACCHARIDE, N, N- KEYWDS 2 DIACETYL CHITOBIOSE, CARBOHYDRATE, SUGAR BINDING, SUGAR BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BOVI,M.E.CARRIZO,S.CAPALDI,M.PERDUCA,L.R.CHIARELLI,M.GALLIANO, AUTHOR 2 H.L.MONACO REVDAT 5 09-OCT-24 3QDU 1 REMARK REVDAT 4 13-SEP-23 3QDU 1 HETSYN REVDAT 3 29-JUL-20 3QDU 1 CAVEAT COMPND REMARK HET REVDAT 3 2 1 HETNAM FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 02-NOV-11 3QDU 1 JRNL VERSN REVDAT 1 23-FEB-11 3QDU 0 JRNL AUTH M.BOVI,M.E.CARRIZO,S.CAPALDI,M.PERDUCA,L.R.CHIARELLI, JRNL AUTH 2 M.GALLIANO,H.L.MONACO JRNL TITL STRUCTURE OF A LECTIN WITH ANTITUMORAL PROPERTIES IN KING JRNL TITL 2 BOLETE (BOLETUS EDULIS) MUSHROOMS. JRNL REF GLYCOBIOLOGY V. 21 1000 2011 JRNL REFN ISSN 0959-6658 JRNL PMID 21303815 JRNL DOI 10.1093/GLYCOB/CWR012 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.63000 REMARK 3 B22 (A**2) : -1.61000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4696 ; 0.003 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6372 ; 0.731 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 4.949 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;26.303 ;23.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;10.976 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ; 9.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3540 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2808 ; 1.515 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4540 ; 2.308 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1888 ; 4.180 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1832 ; 5.924 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3882 -91.0579 49.5943 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0359 REMARK 3 T33: 0.0289 T12: 0.0281 REMARK 3 T13: 0.0363 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.5262 L22: 0.6686 REMARK 3 L33: 0.4872 L12: -0.0690 REMARK 3 L13: 0.2371 L23: -0.0209 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: -0.0088 S13: -0.0162 REMARK 3 S21: 0.1436 S22: 0.0389 S23: 0.0901 REMARK 3 S31: 0.0092 S32: -0.0100 S33: 0.0193 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 145 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1928 -91.4935 16.6551 REMARK 3 T TENSOR REMARK 3 T11: 0.0830 T22: 0.0546 REMARK 3 T33: 0.0389 T12: 0.0184 REMARK 3 T13: 0.0411 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.4140 L22: 0.7187 REMARK 3 L33: 0.9394 L12: 0.0484 REMARK 3 L13: 0.1930 L23: -0.1646 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: 0.0302 S13: 0.0355 REMARK 3 S21: -0.1931 S22: -0.0013 S23: -0.0969 REMARK 3 S31: 0.1303 S32: 0.1362 S33: 0.0477 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 145 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0289 -81.7907 19.5676 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0406 REMARK 3 T33: 0.0554 T12: -0.0212 REMARK 3 T13: -0.0470 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4286 L22: 0.7794 REMARK 3 L33: 0.5408 L12: -0.2226 REMARK 3 L13: -0.0652 L23: -0.2146 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.0039 S13: 0.0071 REMARK 3 S21: -0.1347 S22: 0.0119 S23: 0.1218 REMARK 3 S31: 0.0081 S32: -0.0346 S33: 0.0114 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 145 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2344 -82.5152 46.7374 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.0702 REMARK 3 T33: 0.0876 T12: 0.0057 REMARK 3 T13: -0.0772 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.4960 L22: 1.2184 REMARK 3 L33: 0.5366 L12: -0.1993 REMARK 3 L13: -0.1771 L23: -0.5742 REMARK 3 S TENSOR REMARK 3 S11: -0.0729 S12: -0.0167 S13: 0.0467 REMARK 3 S21: 0.2387 S22: -0.0183 S23: -0.2170 REMARK 3 S31: -0.0895 S32: 0.1057 S33: 0.0912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3QDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE, 10% PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.08700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.08250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.02900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.08250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.08700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.02900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -168.02 -127.72 REMARK 500 ASN A 134 79.02 -114.49 REMARK 500 ASP B 59 1.85 -67.23 REMARK 500 GLU C 22 146.70 -172.04 REMARK 500 GLU D 22 148.62 -171.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QDS RELATED DB: PDB REMARK 900 RELATED ID: 3QDT RELATED DB: PDB REMARK 900 RELATED ID: 3QDV RELATED DB: PDB REMARK 900 RELATED ID: 3QDW RELATED DB: PDB REMARK 900 RELATED ID: 3QDX RELATED DB: PDB REMARK 900 RELATED ID: 3QDY RELATED DB: PDB DBREF 3QDU A 0 142 PDB 3QDU 3QDU 0 142 DBREF 3QDU B 0 142 PDB 3QDU 3QDU 0 142 DBREF 3QDU C 0 142 PDB 3QDU 3QDU 0 142 DBREF 3QDU D 0 142 PDB 3QDU 3QDU 0 142 SEQRES 1 A 143 ACE THR TYR SER ILE THR LEU ARG VAL PHE GLN ARG ASN SEQRES 2 A 143 PRO GLY ARG GLY PHE PHE SER ILE VAL GLU LYS THR VAL SEQRES 3 A 143 PHE HIS TYR ALA ASN GLY GLY THR TRP SER GLU ALA LYS SEQRES 4 A 143 GLY THR HIS THR LEU THR MET GLY GLY SER GLY THR SER SEQRES 5 A 143 GLY VAL LEU ARG PHE MET SER ASP LYS GLY GLU LEU ILE SEQRES 6 A 143 THR VAL ALA VAL GLY VAL HIS ASN TYR LYS ARG TRP CYS SEQRES 7 A 143 ASP VAL VAL THR GLY LEU LYS PRO GLU GLU THR ALA LEU SEQRES 8 A 143 VAL ILE ASN PRO GLN TYR TYR ASN ASN GLY PRO ARG ALA SEQRES 9 A 143 TYR THR ARG GLU LYS GLN LEU ALA GLU TYR ASN VAL THR SEQRES 10 A 143 SER VAL VAL GLY THR ARG PHE GLU VAL LYS TYR THR VAL SEQRES 11 A 143 VAL GLU GLY ASN ASN LEU GLU ALA ASN VAL ILE PHE SER SEQRES 1 B 143 ACE THR TYR SER ILE THR LEU ARG VAL PHE GLN ARG ASN SEQRES 2 B 143 PRO GLY ARG GLY PHE PHE SER ILE VAL GLU LYS THR VAL SEQRES 3 B 143 PHE HIS TYR ALA ASN GLY GLY THR TRP SER GLU ALA LYS SEQRES 4 B 143 GLY THR HIS THR LEU THR MET GLY GLY SER GLY THR SER SEQRES 5 B 143 GLY VAL LEU ARG PHE MET SER ASP LYS GLY GLU LEU ILE SEQRES 6 B 143 THR VAL ALA VAL GLY VAL HIS ASN TYR LYS ARG TRP CYS SEQRES 7 B 143 ASP VAL VAL THR GLY LEU LYS PRO GLU GLU THR ALA LEU SEQRES 8 B 143 VAL ILE ASN PRO GLN TYR TYR ASN ASN GLY PRO ARG ALA SEQRES 9 B 143 TYR THR ARG GLU LYS GLN LEU ALA GLU TYR ASN VAL THR SEQRES 10 B 143 SER VAL VAL GLY THR ARG PHE GLU VAL LYS TYR THR VAL SEQRES 11 B 143 VAL GLU GLY ASN ASN LEU GLU ALA ASN VAL ILE PHE SER SEQRES 1 C 143 ACE THR TYR SER ILE THR LEU ARG VAL PHE GLN ARG ASN SEQRES 2 C 143 PRO GLY ARG GLY PHE PHE SER ILE VAL GLU LYS THR VAL SEQRES 3 C 143 PHE HIS TYR ALA ASN GLY GLY THR TRP SER GLU ALA LYS SEQRES 4 C 143 GLY THR HIS THR LEU THR MET GLY GLY SER GLY THR SER SEQRES 5 C 143 GLY VAL LEU ARG PHE MET SER ASP LYS GLY GLU LEU ILE SEQRES 6 C 143 THR VAL ALA VAL GLY VAL HIS ASN TYR LYS ARG TRP CYS SEQRES 7 C 143 ASP VAL VAL THR GLY LEU LYS PRO GLU GLU THR ALA LEU SEQRES 8 C 143 VAL ILE ASN PRO GLN TYR TYR ASN ASN GLY PRO ARG ALA SEQRES 9 C 143 TYR THR ARG GLU LYS GLN LEU ALA GLU TYR ASN VAL THR SEQRES 10 C 143 SER VAL VAL GLY THR ARG PHE GLU VAL LYS TYR THR VAL SEQRES 11 C 143 VAL GLU GLY ASN ASN LEU GLU ALA ASN VAL ILE PHE SER SEQRES 1 D 143 ACE THR TYR SER ILE THR LEU ARG VAL PHE GLN ARG ASN SEQRES 2 D 143 PRO GLY ARG GLY PHE PHE SER ILE VAL GLU LYS THR VAL SEQRES 3 D 143 PHE HIS TYR ALA ASN GLY GLY THR TRP SER GLU ALA LYS SEQRES 4 D 143 GLY THR HIS THR LEU THR MET GLY GLY SER GLY THR SER SEQRES 5 D 143 GLY VAL LEU ARG PHE MET SER ASP LYS GLY GLU LEU ILE SEQRES 6 D 143 THR VAL ALA VAL GLY VAL HIS ASN TYR LYS ARG TRP CYS SEQRES 7 D 143 ASP VAL VAL THR GLY LEU LYS PRO GLU GLU THR ALA LEU SEQRES 8 D 143 VAL ILE ASN PRO GLN TYR TYR ASN ASN GLY PRO ARG ALA SEQRES 9 D 143 TYR THR ARG GLU LYS GLN LEU ALA GLU TYR ASN VAL THR SEQRES 10 D 143 SER VAL VAL GLY THR ARG PHE GLU VAL LYS TYR THR VAL SEQRES 11 D 143 VAL GLU GLY ASN ASN LEU GLU ALA ASN VAL ILE PHE SER HET ACE A 0 3 HET ACE B 0 3 HET ACE C 0 3 HET ACE D 0 3 HET NAG E 1 15 HET NAG E 2 14 HET NAG F 1 15 HET NAG F 2 14 HET NAG G 1 15 HET NAG G 2 14 HET NAG H 1 15 HET NAG H 2 14 HETNAM ACE ACETYL GROUP HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 ACE 4(C2 H4 O) FORMUL 5 NAG 8(C8 H15 N O6) FORMUL 9 HOH *231(H2 O) HELIX 1 1 ASN A 12 GLY A 16 5 5 HELIX 2 2 THR A 88 ASN A 93 1 6 HELIX 3 3 PRO A 94 TYR A 97 5 4 HELIX 4 4 ARG A 102 LYS A 108 1 7 HELIX 5 5 ASN B 12 GLY B 16 5 5 HELIX 6 6 HIS B 27 ASN B 30 5 4 HELIX 7 7 THR B 88 ASN B 93 1 6 HELIX 8 8 PRO B 94 TYR B 97 5 4 HELIX 9 9 ARG B 102 LYS B 108 1 7 HELIX 10 10 ASN C 12 GLY C 16 5 5 HELIX 11 11 THR C 88 ASN C 93 1 6 HELIX 12 12 PRO C 94 TYR C 97 5 4 HELIX 13 13 ARG C 102 LYS C 108 1 7 HELIX 14 14 ASN D 12 GLY D 16 5 5 HELIX 15 15 THR D 88 ASN D 93 1 6 HELIX 16 16 PRO D 94 TYR D 97 5 4 HELIX 17 17 ARG D 102 LYS D 108 1 7 SHEET 1 A 6 GLY A 32 ALA A 37 0 SHEET 2 A 6 THR A 40 MET A 45 -1 O THR A 44 N THR A 33 SHEET 3 A 6 TYR A 2 GLN A 10 -1 N LEU A 6 O HIS A 41 SHEET 4 A 6 ASN A 134 PHE A 141 1 O VAL A 139 N PHE A 9 SHEET 5 A 6 ARG A 122 VAL A 129 -1 N GLU A 124 O ILE A 140 SHEET 6 A 6 GLU A 112 THR A 116 -1 N VAL A 115 O PHE A 123 SHEET 1 B 4 PHE A 18 VAL A 25 0 SHEET 2 B 4 SER A 51 SER A 58 -1 O ARG A 55 N VAL A 21 SHEET 3 B 4 LEU A 63 HIS A 71 -1 O ILE A 64 N PHE A 56 SHEET 4 B 4 LYS A 74 VAL A 80 -1 O LYS A 74 N HIS A 71 SHEET 1 C 6 GLY B 32 ALA B 37 0 SHEET 2 C 6 THR B 40 MET B 45 -1 O THR B 44 N THR B 33 SHEET 3 C 6 TYR B 2 GLN B 10 -1 N TYR B 2 O MET B 45 SHEET 4 C 6 ASN B 134 PHE B 141 1 O VAL B 139 N PHE B 9 SHEET 5 C 6 ARG B 122 VAL B 129 -1 N GLU B 124 O ILE B 140 SHEET 6 C 6 GLU B 112 THR B 116 -1 N TYR B 113 O VAL B 125 SHEET 1 D 4 PHE B 18 VAL B 25 0 SHEET 2 D 4 THR B 50 SER B 58 -1 O ARG B 55 N VAL B 21 SHEET 3 D 4 LEU B 63 HIS B 71 -1 O ILE B 64 N PHE B 56 SHEET 4 D 4 LYS B 74 VAL B 80 -1 O LYS B 74 N HIS B 71 SHEET 1 E 6 GLY C 32 ALA C 37 0 SHEET 2 E 6 THR C 40 MET C 45 -1 O THR C 44 N THR C 33 SHEET 3 E 6 TYR C 2 GLN C 10 -1 N LEU C 6 O HIS C 41 SHEET 4 E 6 ASN C 134 PHE C 141 1 O VAL C 139 N PHE C 9 SHEET 5 E 6 ARG C 122 VAL C 129 -1 N THR C 128 O GLU C 136 SHEET 6 E 6 GLU C 112 THR C 116 -1 N TYR C 113 O VAL C 125 SHEET 1 F 4 PHE C 18 VAL C 25 0 SHEET 2 F 4 SER C 51 SER C 58 -1 O ARG C 55 N VAL C 21 SHEET 3 F 4 LEU C 63 HIS C 71 -1 O ILE C 64 N PHE C 56 SHEET 4 F 4 LYS C 74 VAL C 80 -1 O LYS C 74 N HIS C 71 SHEET 1 G 6 GLY D 32 ALA D 37 0 SHEET 2 G 6 THR D 40 MET D 45 -1 O THR D 44 N THR D 33 SHEET 3 G 6 TYR D 2 GLN D 10 -1 N LEU D 6 O HIS D 41 SHEET 4 G 6 ASN D 134 PHE D 141 1 O VAL D 139 N PHE D 9 SHEET 5 G 6 ARG D 122 VAL D 129 -1 N GLU D 124 O ILE D 140 SHEET 6 G 6 GLU D 112 THR D 116 -1 N TYR D 113 O VAL D 125 SHEET 1 H 4 PHE D 18 VAL D 25 0 SHEET 2 H 4 SER D 51 SER D 58 -1 O ARG D 55 N VAL D 21 SHEET 3 H 4 LEU D 63 HIS D 71 -1 O ILE D 64 N PHE D 56 SHEET 4 H 4 LYS D 74 VAL D 80 -1 O LYS D 74 N HIS D 71 LINK C ACE A 0 N THR A 1 1555 1555 1.33 LINK C ACE B 0 N THR B 1 1555 1555 1.33 LINK C ACE C 0 N THR C 1 1555 1555 1.33 LINK C ACE D 0 N THR D 1 1555 1555 1.33 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.43 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.43 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.43 CRYST1 68.174 84.058 120.165 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008322 0.00000 HETATM 1 C ACE A 0 0.324-108.588 49.543 1.00 18.77 C ANISOU 1 C ACE A 0 2759 2072 2302 518 146 -90 C HETATM 2 O ACE A 0 -0.452-108.023 50.312 1.00 18.01 O ANISOU 2 O ACE A 0 2686 1966 2190 494 171 -54 O HETATM 3 CH3 ACE A 0 0.556-110.100 49.611 1.00 15.75 C ANISOU 3 CH3 ACE A 0 2404 1632 1948 545 122 -100 C