data_3QEC # _entry.id 3QEC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QEC pdb_00003qec 10.2210/pdb3qec/pdb RCSB RCSB063537 ? ? WWPDB D_1000063537 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 417336 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3QEC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-01-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a putative carbohydrate binding protein (PA1324) from Pseudomonas aeruginosa at 2.61 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3QEC _cell.length_a 132.787 _cell.length_b 132.787 _cell.length_c 132.787 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QEC _symmetry.Int_Tables_number 212 _symmetry.space_group_name_H-M 'P 43 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative carbohydrate binding protein' 16336.757 1 ? ? 'sequence database residues 22-170' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 5 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 6 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSNPNDLPDFPEHEYAATQQVGEGVINGDLYLTSASGAIQKGTNTKVALEPATSY(MSE)KAYYAKFGNLDAAKRDPDVQ PPVLDPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR ; _entity_poly.pdbx_seq_one_letter_code_can ;GSNPNDLPDFPEHEYAATQQVGEGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPPVL DPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 417336 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASN n 1 4 PRO n 1 5 ASN n 1 6 ASP n 1 7 LEU n 1 8 PRO n 1 9 ASP n 1 10 PHE n 1 11 PRO n 1 12 GLU n 1 13 HIS n 1 14 GLU n 1 15 TYR n 1 16 ALA n 1 17 ALA n 1 18 THR n 1 19 GLN n 1 20 GLN n 1 21 VAL n 1 22 GLY n 1 23 GLU n 1 24 GLY n 1 25 VAL n 1 26 ILE n 1 27 ASN n 1 28 GLY n 1 29 ASP n 1 30 LEU n 1 31 TYR n 1 32 LEU n 1 33 THR n 1 34 SER n 1 35 ALA n 1 36 SER n 1 37 GLY n 1 38 ALA n 1 39 ILE n 1 40 GLN n 1 41 LYS n 1 42 GLY n 1 43 THR n 1 44 ASN n 1 45 THR n 1 46 LYS n 1 47 VAL n 1 48 ALA n 1 49 LEU n 1 50 GLU n 1 51 PRO n 1 52 ALA n 1 53 THR n 1 54 SER n 1 55 TYR n 1 56 MSE n 1 57 LYS n 1 58 ALA n 1 59 TYR n 1 60 TYR n 1 61 ALA n 1 62 LYS n 1 63 PHE n 1 64 GLY n 1 65 ASN n 1 66 LEU n 1 67 ASP n 1 68 ALA n 1 69 ALA n 1 70 LYS n 1 71 ARG n 1 72 ASP n 1 73 PRO n 1 74 ASP n 1 75 VAL n 1 76 GLN n 1 77 PRO n 1 78 PRO n 1 79 VAL n 1 80 LEU n 1 81 ASP n 1 82 PRO n 1 83 ARG n 1 84 ARG n 1 85 ALA n 1 86 THR n 1 87 TYR n 1 88 VAL n 1 89 ARG n 1 90 GLU n 1 91 ALA n 1 92 THR n 1 93 THR n 1 94 ASP n 1 95 GLN n 1 96 ASN n 1 97 GLY n 1 98 ARG n 1 99 PHE n 1 100 ASP n 1 101 PHE n 1 102 ASP n 1 103 HIS n 1 104 ILE n 1 105 PRO n 1 106 ASN n 1 107 GLY n 1 108 THR n 1 109 TYR n 1 110 TYR n 1 111 ILE n 1 112 SER n 1 113 SER n 1 114 GLU n 1 115 LEU n 1 116 THR n 1 117 TRP n 1 118 SER n 1 119 ALA n 1 120 GLN n 1 121 SER n 1 122 ASP n 1 123 GLY n 1 124 LYS n 1 125 THR n 1 126 ILE n 1 127 THR n 1 128 GLU n 1 129 GLY n 1 130 GLY n 1 131 THR n 1 132 VAL n 1 133 THR n 1 134 LYS n 1 135 LEU n 1 136 VAL n 1 137 THR n 1 138 VAL n 1 139 SER n 1 140 GLY n 1 141 SER n 1 142 GLN n 1 143 PRO n 1 144 GLN n 1 145 LYS n 1 146 VAL n 1 147 LEU n 1 148 LEU n 1 149 THR n 1 150 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PA1324 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9I420_PSEAE _struct_ref.pdbx_db_accession Q9I420 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SNPNDLPDFPEHEYAATQQVGEGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPPVLD PRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QEC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9I420 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 170 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 170 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3QEC _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9I420 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3QEC # _exptl_crystal.id 1 _exptl_crystal.density_Matthews ? _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.9 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;15.00% Glycerol, 1.85% polyethylene glycol 400, 2.10M ammonium sulfate, 0.1M HEPES pH 7.9, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2010-11-23 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.98012 1.0 3 0.97944 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.98012,0.97944 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3QEC _reflns.d_resolution_high 2.61 _reflns.d_resolution_low 29.692 _reflns.number_obs 12763 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_netI_over_sigmaI 28.750 _reflns.percent_possible_obs 97.600 _reflns.B_iso_Wilson_estimate 84.108 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.590 2.680 17589 ? 1793 0.784 2.8 ? ? ? ? ? 77.500 1 1 2.680 2.790 27831 ? 2405 0.607 4.1 ? ? ? ? ? 100.000 2 1 2.790 2.920 27928 ? 2415 0.359 6.7 ? ? ? ? ? 99.900 3 1 2.920 3.070 26801 ? 2312 0.240 10.0 ? ? ? ? ? 99.900 4 1 3.070 3.260 27023 ? 2328 0.143 16.3 ? ? ? ? ? 99.900 5 1 3.260 3.510 27060 ? 2341 0.084 26.8 ? ? ? ? ? 99.900 6 1 3.510 3.860 27055 ? 2350 0.058 38.1 ? ? ? ? ? 99.800 7 1 3.860 4.420 27172 ? 2379 0.044 50.8 ? ? ? ? ? 99.900 8 1 4.420 5.540 26582 ? 2341 0.034 60.0 ? ? ? ? ? 100.000 9 1 5.540 29.692 27598 ? 2415 0.027 65.3 ? ? ? ? ? 99.000 10 1 # _refine.entry_id 3QEC _refine.ls_d_res_high 2.6100 _refine.ls_d_res_low 29.692 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 12685 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. SULFATE (SO4) AND PEG-400 FRAGMENTS (PEG AND PGE) FROM THE CRYSTALLIZATION SOLUTION AND GLYCEROL FROM THE CRYOPROTECTANT HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2106 _refine.ls_R_factor_R_work 0.2099 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2256 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8900 _refine.ls_number_reflns_R_free 620 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 70.3766 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9345 _refine.correlation_coeff_Fo_to_Fc_free 0.9339 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 156.180 _refine.B_iso_min 45.680 _refine.occupancy_max 1.000 _refine.occupancy_min 0.330 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1105 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 1185 _refine_hist.d_res_high 2.6100 _refine_hist.d_res_low 29.692 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_dihedral_angle_d 531 ? ? 2.000 'X-RAY DIFFRACTION' SINUSOIDAL t_trig_c_planes 33 ? ? 2.000 'X-RAY DIFFRACTION' HARMONIC t_gen_planes 172 ? ? 5.000 'X-RAY DIFFRACTION' HARMONIC t_it 1186 ? ? 20.000 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion 157 ? ? 5.000 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact 1213 ? ? 4.000 'X-RAY DIFFRACTION' SEMIHARMONIC t_bond_d 1186 0.010 ? 2.000 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1611 1.050 ? 2.000 'X-RAY DIFFRACTION' HARMONIC t_omega_torsion ? 3.360 ? ? 'X-RAY DIFFRACTION' ? t_other_torsion ? 2.680 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.6100 _refine_ls_shell.d_res_low 2.8600 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2784 _refine_ls_shell.R_factor_all 0.2292 _refine_ls_shell.R_factor_R_work 0.2278 _refine_ls_shell.R_factor_R_free 0.2537 _refine_ls_shell.percent_reflns_R_free 5.3700 _refine_ls_shell.number_reflns_R_free 158 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2942 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3QEC _struct.title 'Crystal structure of a putative carbohydrate binding protein (PA1324) from Pseudomonas aeruginosa at 2.61 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;SURAMIN BINDING, HEPARIN BINDING, POSSIBLE CARBOHYDRATE TRANSPORTER, BIOFILM FORMATION, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, CARBOHYDRATE- BINDING PROTEIN, CARBOHYDRATE-BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'CARBOHYDRATE-BINDING PROTEIN' _struct_keywords.entry_id 3QEC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIC FORM.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 11 ? ALA A 17 ? PRO A 31 ALA A 37 1 ? 7 HELX_P HELX_P2 2 THR A 53 ? GLY A 64 ? THR A 73 GLY A 84 1 ? 12 HELX_P HELX_P3 3 ARG A 84 ? VAL A 88 ? ARG A 104 VAL A 108 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 55 C ? ? ? 1_555 A MSE 56 N ? ? A TYR 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale2 covale both ? A MSE 56 C ? ? ? 1_555 A LYS 57 N ? ? A MSE 76 A LYS 77 1_555 ? ? ? ? ? ? ? 1.349 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 39 ? LYS A 41 ? ILE A 59 LYS A 61 A 2 GLY A 24 ? THR A 33 ? GLY A 44 THR A 53 A 3 ARG A 98 ? ILE A 104 ? ARG A 118 ILE A 124 B 1 ILE A 39 ? LYS A 41 ? ILE A 59 LYS A 61 B 2 GLY A 24 ? THR A 33 ? GLY A 44 THR A 53 B 3 VAL A 146 ? LEU A 148 ? VAL A 166 LEU A 168 C 1 ARG A 89 ? THR A 92 ? ARG A 109 THR A 112 C 2 LYS A 46 ? PRO A 51 ? LYS A 66 PRO A 71 C 3 GLY A 107 ? GLN A 120 ? GLY A 127 GLN A 140 C 4 THR A 125 ? VAL A 138 ? THR A 145 VAL A 158 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 40 ? O GLN A 60 N LEU A 32 ? N LEU A 52 A 2 3 N GLY A 24 ? N GLY A 44 O ILE A 104 ? O ILE A 124 B 1 2 O GLN A 40 ? O GLN A 60 N LEU A 32 ? N LEU A 52 B 2 3 N ASN A 27 ? N ASN A 47 O VAL A 146 ? O VAL A 166 C 1 2 O ALA A 91 ? O ALA A 111 N VAL A 47 ? N VAL A 67 C 2 3 N ALA A 48 ? N ALA A 68 O SER A 112 ? O SER A 132 C 3 4 N GLY A 107 ? N GLY A 127 O VAL A 138 ? O VAL A 158 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 200 ? 9 'BINDING SITE FOR RESIDUE SO4 A 200' AC2 Software A GOL 201 ? 7 'BINDING SITE FOR RESIDUE GOL A 201' AC3 Software A GOL 202 ? 6 'BINDING SITE FOR RESIDUE GOL A 202' AC4 Software A PEG 203 ? 5 'BINDING SITE FOR RESIDUE PEG A 203' AC5 Software A PEG 204 ? 4 'BINDING SITE FOR RESIDUE PEG A 204' AC6 Software A PGE 205 ? 2 'BINDING SITE FOR RESIDUE PGE A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 SER A 139 ? SER A 159 . ? 5_555 ? 2 AC1 9 SER A 139 ? SER A 159 . ? 9_555 ? 3 AC1 9 SER A 139 ? SER A 159 . ? 1_555 ? 4 AC1 9 GLY A 140 ? GLY A 160 . ? 1_555 ? 5 AC1 9 GLY A 140 ? GLY A 160 . ? 5_555 ? 6 AC1 9 GLY A 140 ? GLY A 160 . ? 9_555 ? 7 AC1 9 GOL C . ? GOL A 201 . ? 9_555 ? 8 AC1 9 GOL C . ? GOL A 201 . ? 1_555 ? 9 AC1 9 GOL C . ? GOL A 201 . ? 5_555 ? 10 AC2 7 GLY A 140 ? GLY A 160 . ? 9_555 ? 11 AC2 7 SER A 141 ? SER A 161 . ? 9_555 ? 12 AC2 7 GLN A 142 ? GLN A 162 . ? 1_555 ? 13 AC2 7 GLN A 142 ? GLN A 162 . ? 9_555 ? 14 AC2 7 SO4 B . ? SO4 A 200 . ? 5_555 ? 15 AC2 7 SO4 B . ? SO4 A 200 . ? 9_555 ? 16 AC2 7 SO4 B . ? SO4 A 200 . ? 1_555 ? 17 AC3 6 LEU A 32 ? LEU A 52 . ? 1_555 ? 18 AC3 6 THR A 33 ? THR A 53 . ? 1_555 ? 19 AC3 6 ASP A 67 ? ASP A 87 . ? 1_555 ? 20 AC3 6 GLU A 128 ? GLU A 148 . ? 1_555 ? 21 AC3 6 GLY A 129 ? GLY A 149 . ? 1_555 ? 22 AC3 6 ARG A 150 ? ARG A 170 . ? 1_555 ? 23 AC4 5 GLU A 90 ? GLU A 110 . ? 1_555 ? 24 AC4 5 ALA A 91 ? ALA A 111 . ? 1_555 ? 25 AC4 5 THR A 92 ? THR A 112 . ? 1_555 ? 26 AC4 5 PHE A 99 ? PHE A 119 . ? 1_555 ? 27 AC4 5 ASP A 100 ? ASP A 120 . ? 1_555 ? 28 AC5 4 THR A 45 ? THR A 65 . ? 1_555 ? 29 AC5 4 GLU A 114 ? GLU A 134 . ? 1_555 ? 30 AC5 4 LEU A 115 ? LEU A 135 . ? 1_555 ? 31 AC5 4 THR A 116 ? THR A 136 . ? 1_555 ? 32 AC6 2 ALA A 52 ? ALA A 72 . ? 1_555 ? 33 AC6 2 TYR A 110 ? TYR A 130 . ? 1_555 ? # _atom_sites.entry_id 3QEC _atom_sites.fract_transf_matrix[1][1] 0.007531 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007531 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007531 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 SER 2 22 ? ? ? A . n A 1 3 ASN 3 23 ? ? ? A . n A 1 4 PRO 4 24 ? ? ? A . n A 1 5 ASN 5 25 ? ? ? A . n A 1 6 ASP 6 26 26 ASP ASP A . n A 1 7 LEU 7 27 27 LEU LEU A . n A 1 8 PRO 8 28 28 PRO PRO A . n A 1 9 ASP 9 29 29 ASP ASP A . n A 1 10 PHE 10 30 30 PHE PHE A . n A 1 11 PRO 11 31 31 PRO PRO A . n A 1 12 GLU 12 32 32 GLU GLU A . n A 1 13 HIS 13 33 33 HIS HIS A . n A 1 14 GLU 14 34 34 GLU GLU A . n A 1 15 TYR 15 35 35 TYR TYR A . n A 1 16 ALA 16 36 36 ALA ALA A . n A 1 17 ALA 17 37 37 ALA ALA A . n A 1 18 THR 18 38 38 THR THR A . n A 1 19 GLN 19 39 39 GLN GLN A . n A 1 20 GLN 20 40 40 GLN GLN A . n A 1 21 VAL 21 41 41 VAL VAL A . n A 1 22 GLY 22 42 42 GLY GLY A . n A 1 23 GLU 23 43 43 GLU GLU A . n A 1 24 GLY 24 44 44 GLY GLY A . n A 1 25 VAL 25 45 45 VAL VAL A . n A 1 26 ILE 26 46 46 ILE ILE A . n A 1 27 ASN 27 47 47 ASN ASN A . n A 1 28 GLY 28 48 48 GLY GLY A . n A 1 29 ASP 29 49 49 ASP ASP A . n A 1 30 LEU 30 50 50 LEU LEU A . n A 1 31 TYR 31 51 51 TYR TYR A . n A 1 32 LEU 32 52 52 LEU LEU A . n A 1 33 THR 33 53 53 THR THR A . n A 1 34 SER 34 54 54 SER SER A . n A 1 35 ALA 35 55 55 ALA ALA A . n A 1 36 SER 36 56 56 SER SER A . n A 1 37 GLY 37 57 57 GLY GLY A . n A 1 38 ALA 38 58 58 ALA ALA A . n A 1 39 ILE 39 59 59 ILE ILE A . n A 1 40 GLN 40 60 60 GLN GLN A . n A 1 41 LYS 41 61 61 LYS LYS A . n A 1 42 GLY 42 62 62 GLY GLY A . n A 1 43 THR 43 63 63 THR THR A . n A 1 44 ASN 44 64 64 ASN ASN A . n A 1 45 THR 45 65 65 THR THR A . n A 1 46 LYS 46 66 66 LYS LYS A . n A 1 47 VAL 47 67 67 VAL VAL A . n A 1 48 ALA 48 68 68 ALA ALA A . n A 1 49 LEU 49 69 69 LEU LEU A . n A 1 50 GLU 50 70 70 GLU GLU A . n A 1 51 PRO 51 71 71 PRO PRO A . n A 1 52 ALA 52 72 72 ALA ALA A . n A 1 53 THR 53 73 73 THR THR A . n A 1 54 SER 54 74 74 SER SER A . n A 1 55 TYR 55 75 75 TYR TYR A . n A 1 56 MSE 56 76 76 MSE MSE A . n A 1 57 LYS 57 77 77 LYS LYS A . n A 1 58 ALA 58 78 78 ALA ALA A . n A 1 59 TYR 59 79 79 TYR TYR A . n A 1 60 TYR 60 80 80 TYR TYR A . n A 1 61 ALA 61 81 81 ALA ALA A . n A 1 62 LYS 62 82 82 LYS LYS A . n A 1 63 PHE 63 83 83 PHE PHE A . n A 1 64 GLY 64 84 84 GLY GLY A . n A 1 65 ASN 65 85 85 ASN ASN A . n A 1 66 LEU 66 86 86 LEU LEU A . n A 1 67 ASP 67 87 87 ASP ASP A . n A 1 68 ALA 68 88 88 ALA ALA A . n A 1 69 ALA 69 89 89 ALA ALA A . n A 1 70 LYS 70 90 90 LYS LYS A . n A 1 71 ARG 71 91 91 ARG ARG A . n A 1 72 ASP 72 92 92 ASP ASP A . n A 1 73 PRO 73 93 93 PRO PRO A . n A 1 74 ASP 74 94 94 ASP ASP A . n A 1 75 VAL 75 95 95 VAL VAL A . n A 1 76 GLN 76 96 96 GLN GLN A . n A 1 77 PRO 77 97 97 PRO PRO A . n A 1 78 PRO 78 98 98 PRO PRO A . n A 1 79 VAL 79 99 99 VAL VAL A . n A 1 80 LEU 80 100 100 LEU LEU A . n A 1 81 ASP 81 101 101 ASP ASP A . n A 1 82 PRO 82 102 102 PRO PRO A . n A 1 83 ARG 83 103 103 ARG ARG A . n A 1 84 ARG 84 104 104 ARG ARG A . n A 1 85 ALA 85 105 105 ALA ALA A . n A 1 86 THR 86 106 106 THR THR A . n A 1 87 TYR 87 107 107 TYR TYR A . n A 1 88 VAL 88 108 108 VAL VAL A . n A 1 89 ARG 89 109 109 ARG ARG A . n A 1 90 GLU 90 110 110 GLU GLU A . n A 1 91 ALA 91 111 111 ALA ALA A . n A 1 92 THR 92 112 112 THR THR A . n A 1 93 THR 93 113 113 THR THR A . n A 1 94 ASP 94 114 114 ASP ASP A . n A 1 95 GLN 95 115 115 GLN GLN A . n A 1 96 ASN 96 116 116 ASN ASN A . n A 1 97 GLY 97 117 117 GLY GLY A . n A 1 98 ARG 98 118 118 ARG ARG A . n A 1 99 PHE 99 119 119 PHE PHE A . n A 1 100 ASP 100 120 120 ASP ASP A . n A 1 101 PHE 101 121 121 PHE PHE A . n A 1 102 ASP 102 122 122 ASP ASP A . n A 1 103 HIS 103 123 123 HIS HIS A . n A 1 104 ILE 104 124 124 ILE ILE A . n A 1 105 PRO 105 125 125 PRO PRO A . n A 1 106 ASN 106 126 126 ASN ASN A . n A 1 107 GLY 107 127 127 GLY GLY A . n A 1 108 THR 108 128 128 THR THR A . n A 1 109 TYR 109 129 129 TYR TYR A . n A 1 110 TYR 110 130 130 TYR TYR A . n A 1 111 ILE 111 131 131 ILE ILE A . n A 1 112 SER 112 132 132 SER SER A . n A 1 113 SER 113 133 133 SER SER A . n A 1 114 GLU 114 134 134 GLU GLU A . n A 1 115 LEU 115 135 135 LEU LEU A . n A 1 116 THR 116 136 136 THR THR A . n A 1 117 TRP 117 137 137 TRP TRP A . n A 1 118 SER 118 138 138 SER SER A . n A 1 119 ALA 119 139 139 ALA ALA A . n A 1 120 GLN 120 140 140 GLN GLN A . n A 1 121 SER 121 141 141 SER SER A . n A 1 122 ASP 122 142 142 ASP ASP A . n A 1 123 GLY 123 143 143 GLY GLY A . n A 1 124 LYS 124 144 144 LYS LYS A . n A 1 125 THR 125 145 145 THR THR A . n A 1 126 ILE 126 146 146 ILE ILE A . n A 1 127 THR 127 147 147 THR THR A . n A 1 128 GLU 128 148 148 GLU GLU A . n A 1 129 GLY 129 149 149 GLY GLY A . n A 1 130 GLY 130 150 150 GLY GLY A . n A 1 131 THR 131 151 151 THR THR A . n A 1 132 VAL 132 152 152 VAL VAL A . n A 1 133 THR 133 153 153 THR THR A . n A 1 134 LYS 134 154 154 LYS LYS A . n A 1 135 LEU 135 155 155 LEU LEU A . n A 1 136 VAL 136 156 156 VAL VAL A . n A 1 137 THR 137 157 157 THR THR A . n A 1 138 VAL 138 158 158 VAL VAL A . n A 1 139 SER 139 159 159 SER SER A . n A 1 140 GLY 140 160 160 GLY GLY A . n A 1 141 SER 141 161 161 SER SER A . n A 1 142 GLN 142 162 162 GLN GLN A . n A 1 143 PRO 143 163 163 PRO PRO A . n A 1 144 GLN 144 164 164 GLN GLN A . n A 1 145 LYS 145 165 165 LYS LYS A . n A 1 146 VAL 146 166 166 VAL VAL A . n A 1 147 LEU 147 167 167 LEU LEU A . n A 1 148 LEU 148 168 168 LEU LEU A . n A 1 149 THR 149 169 169 THR THR A . n A 1 150 ARG 150 170 170 ARG ARG A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 200 200 SO4 SO4 A . C 3 GOL 1 201 201 GOL GOL A . D 3 GOL 1 202 202 GOL GOL A . E 4 PEG 1 203 203 PEG PEG A . F 4 PEG 1 204 204 PEG PEG A . G 5 PGE 1 205 205 PGE PGE A . H 6 HOH 1 206 206 HOH HOH A . H 6 HOH 2 207 207 HOH HOH A . H 6 HOH 3 208 208 HOH HOH A . H 6 HOH 4 209 209 HOH HOH A . H 6 HOH 5 210 210 HOH HOH A . H 6 HOH 6 211 211 HOH HOH A . H 6 HOH 7 212 212 HOH HOH A . H 6 HOH 8 213 213 HOH HOH A . H 6 HOH 9 214 214 HOH HOH A . H 6 HOH 10 215 215 HOH HOH A . H 6 HOH 11 216 216 HOH HOH A . H 6 HOH 12 217 217 HOH HOH A . H 6 HOH 13 218 218 HOH HOH A . H 6 HOH 14 219 219 HOH HOH A . H 6 HOH 15 220 220 HOH HOH A . H 6 HOH 16 221 221 HOH HOH A . H 6 HOH 17 222 222 HOH HOH A . H 6 HOH 18 223 223 HOH HOH A . H 6 HOH 19 224 224 HOH HOH A . H 6 HOH 20 225 225 HOH HOH A . H 6 HOH 21 226 226 HOH HOH A . H 6 HOH 22 227 227 HOH HOH A . H 6 HOH 23 228 228 HOH HOH A . H 6 HOH 24 229 229 HOH HOH A . H 6 HOH 25 230 230 HOH HOH A . H 6 HOH 26 231 231 HOH HOH A . H 6 HOH 27 232 232 HOH HOH A . H 6 HOH 28 233 233 HOH HOH A . H 6 HOH 29 234 234 HOH HOH A . H 6 HOH 30 235 235 HOH HOH A . H 6 HOH 31 236 236 HOH HOH A . H 6 HOH 32 237 237 HOH HOH A . H 6 HOH 33 238 238 HOH HOH A . H 6 HOH 34 239 239 HOH HOH A . H 6 HOH 35 240 240 HOH HOH A . H 6 HOH 36 241 241 HOH HOH A . H 6 HOH 37 242 242 HOH HOH A . H 6 HOH 38 243 243 HOH HOH A . H 6 HOH 39 244 244 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 56 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 76 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2,3 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 9110 ? 2 MORE -34 ? 2 'SSA (A^2)' 21580 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 200 ? B SO4 . 2 1 A SO4 200 ? B SO4 . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-20 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 108.9690 _pdbx_refine_tls.origin_y 133.4140 _pdbx_refine_tls.origin_z 125.0850 _pdbx_refine_tls.T[1][1] -0.0445 _pdbx_refine_tls.T[2][2] 0.0098 _pdbx_refine_tls.T[3][3] -0.1579 _pdbx_refine_tls.T[1][2] 0.1061 _pdbx_refine_tls.T[1][3] 0.0076 _pdbx_refine_tls.T[2][3] -0.0235 _pdbx_refine_tls.L[1][1] 1.4696 _pdbx_refine_tls.L[2][2] 2.3162 _pdbx_refine_tls.L[3][3] 1.8271 _pdbx_refine_tls.L[1][2] -0.2151 _pdbx_refine_tls.L[1][3] 0.1295 _pdbx_refine_tls.L[2][3] -1.1362 _pdbx_refine_tls.S[1][1] -0.0240 _pdbx_refine_tls.S[2][2] 0.1259 _pdbx_refine_tls.S[3][3] -0.1019 _pdbx_refine_tls.S[1][2] -0.0886 _pdbx_refine_tls.S[1][3] 0.0767 _pdbx_refine_tls.S[2][3] 0.1480 _pdbx_refine_tls.S[2][1] 0.0269 _pdbx_refine_tls.S[3][1] -0.3733 _pdbx_refine_tls.S[3][2] -0.4312 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 26 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 170 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 2 BUSTER-TNT 'BUSTER 2.8.0' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 3 XSCALE . ? package 'Wolfgang Kabsch' ? 'data processing' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 XSCALE . ? ? ? ? 'data scaling' ? ? ? 7 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 3QEC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 22-170) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 141 ? ? -138.01 -86.75 2 1 ASP A 142 ? ? -106.88 52.99 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 82 ? CG ? A LYS 62 CG 2 1 Y 1 A LYS 82 ? CD ? A LYS 62 CD 3 1 Y 1 A LYS 82 ? CE ? A LYS 62 CE 4 1 Y 1 A LYS 82 ? NZ ? A LYS 62 NZ 5 1 Y 1 A ASP 94 ? CG ? A ASP 74 CG 6 1 Y 1 A ASP 94 ? OD1 ? A ASP 74 OD1 7 1 Y 1 A ASP 94 ? OD2 ? A ASP 74 OD2 8 1 Y 1 A LYS 144 ? CG ? A LYS 124 CG 9 1 Y 1 A LYS 144 ? CD ? A LYS 124 CD 10 1 Y 1 A LYS 144 ? CE ? A LYS 124 CE 11 1 Y 1 A LYS 144 ? NZ ? A LYS 124 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A SER 22 ? A SER 2 3 1 Y 1 A ASN 23 ? A ASN 3 4 1 Y 1 A PRO 24 ? A PRO 4 5 1 Y 1 A ASN 25 ? A ASN 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'TRIETHYLENE GLYCOL' PGE 6 water HOH #