data_3QF2 # _entry.id 3QF2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3QF2 RCSB RCSB063563 WWPDB D_1000063563 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QF2 _pdbx_database_status.recvd_initial_deposition_date 2011-01-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Park, H.H.' 1 'Bae, J.Y.' 2 # _citation.id primary _citation.title 'Crystal Structure of NALP3 Protein Pyrin Domain (PYD) and Its Implications in Inflammasome Assembly' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 39528 _citation.page_last 39536 _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21880711 _citation.pdbx_database_id_DOI 10.1074/jbc.M111.278812 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bae, J.Y.' 1 primary 'Park, H.H.' 2 # _cell.entry_id 3QF2 _cell.length_a 42.032 _cell.length_b 60.040 _cell.length_c 51.529 _cell.angle_alpha 90.00 _cell.angle_beta 107.62 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QF2 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NACHT, LRR and PYD domains-containing protein 3' 12704.473 2 ? ? 'PYD domain, DAPIN domain, residues 3-112' ? 2 water nat water 18.015 247 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;NALP3, Angiotensin/vasopressin receptor AII/AVP-like, Caterpiller protein 1.1, CLR1.1, Cold autoinflammatory syndrome 1 protein, Cryopyrin, PYRIN-containing APAF1-like protein 1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MASTRCKLARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWAMAVWIFAAINRRD LYEKAKRDEPKWGSDNARVSNPTVICQEDS ; _entity_poly.pdbx_seq_one_letter_code_can ;MASTRCKLARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWAMAVWIFAAINRRD LYEKAKRDEPKWGSDNARVSNPTVICQEDS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 THR n 1 5 ARG n 1 6 CYS n 1 7 LYS n 1 8 LEU n 1 9 ALA n 1 10 ARG n 1 11 TYR n 1 12 LEU n 1 13 GLU n 1 14 ASP n 1 15 LEU n 1 16 GLU n 1 17 ASP n 1 18 VAL n 1 19 ASP n 1 20 LEU n 1 21 LYS n 1 22 LYS n 1 23 PHE n 1 24 LYS n 1 25 MET n 1 26 HIS n 1 27 LEU n 1 28 GLU n 1 29 ASP n 1 30 TYR n 1 31 PRO n 1 32 PRO n 1 33 GLN n 1 34 LYS n 1 35 GLY n 1 36 CYS n 1 37 ILE n 1 38 PRO n 1 39 LEU n 1 40 PRO n 1 41 ARG n 1 42 GLY n 1 43 GLN n 1 44 THR n 1 45 GLU n 1 46 LYS n 1 47 ALA n 1 48 ASP n 1 49 HIS n 1 50 VAL n 1 51 ASP n 1 52 LEU n 1 53 ALA n 1 54 THR n 1 55 LEU n 1 56 MET n 1 57 ILE n 1 58 ASP n 1 59 PHE n 1 60 ASN n 1 61 GLY n 1 62 GLU n 1 63 GLU n 1 64 LYS n 1 65 ALA n 1 66 TRP n 1 67 ALA n 1 68 MET n 1 69 ALA n 1 70 VAL n 1 71 TRP n 1 72 ILE n 1 73 PHE n 1 74 ALA n 1 75 ALA n 1 76 ILE n 1 77 ASN n 1 78 ARG n 1 79 ARG n 1 80 ASP n 1 81 LEU n 1 82 TYR n 1 83 GLU n 1 84 LYS n 1 85 ALA n 1 86 LYS n 1 87 ARG n 1 88 ASP n 1 89 GLU n 1 90 PRO n 1 91 LYS n 1 92 TRP n 1 93 GLY n 1 94 SER n 1 95 ASP n 1 96 ASN n 1 97 ALA n 1 98 ARG n 1 99 VAL n 1 100 SER n 1 101 ASN n 1 102 PRO n 1 103 THR n 1 104 VAL n 1 105 ILE n 1 106 CYS n 1 107 GLN n 1 108 GLU n 1 109 ASP n 1 110 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NALP3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NALP3_HUMAN _struct_ref.pdbx_db_accession Q96P20 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASTRCKLARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWAMAVWIFAAINRRD LYEKAKRDEPKWGSDNARVSNPTVICQEDS ; _struct_ref.pdbx_align_begin 3 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QF2 A 1 ? 110 ? Q96P20 3 ? 112 ? 3 112 2 1 3QF2 B 1 ? 110 ? Q96P20 3 ? 112 ? 3 112 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QF2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '0.2M ammonium citrate, 0.1M sodium acetate pH4.6, 30% PEG MME 2000, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-09-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3QF2 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.7 _reflns.number_obs 26472 _reflns.number_all ? _reflns.pdbx_number_measured_all 100286 _reflns.percent_possible_obs 75 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.745 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3QF2 _refine.ls_number_reflns_obs 23650 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.61 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.18592 _refine.ls_R_factor_all 0.2123 _refine.ls_R_factor_R_work 0.18329 _refine.ls_R_factor_R_free 0.23500 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1266 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 20.947 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.01 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.114 _refine.overall_SU_ML 0.067 _refine.overall_SU_B 4.443 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1606 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 247 _refine_hist.number_atoms_total 1853 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 25.61 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.022 ? 1645 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.142 1.967 ? 2220 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.618 5.000 ? 194 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.010 24.146 ? 82 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.080 15.000 ? 306 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.010 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.164 0.200 ? 231 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.021 ? 1255 'X-RAY DIFFRACTION' ? r_mcbond_it 1.318 1.500 ? 984 'X-RAY DIFFRACTION' ? r_mcangle_it 2.368 2.000 ? 1583 'X-RAY DIFFRACTION' ? r_scbond_it 3.935 3.000 ? 661 'X-RAY DIFFRACTION' ? r_scangle_it 5.907 4.500 ? 637 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 745 0.49 0.50 'medium positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 1 A 745 1.48 2.00 'medium thermal' 1 2 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.701 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.number_reflns_R_work 1527 _refine_ls_shell.R_factor_R_work 0.222 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 5 A 94 1 4 ? ? ? ? ? ? ? ? 1 ? 2 B 5 B 110 1 4 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3QF2 _struct.title 'Crystal structure of NALP3 PYD' _struct.pdbx_descriptor 'NACHT, LRR and PYD domains-containing protein 3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QF2 _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'Six helix bundle, Apoptosis' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? ASP A 14 ? SER A 5 ASP A 16 1 ? 12 HELX_P HELX_P2 2 GLU A 16 ? ASP A 29 ? GLU A 18 ASP A 31 1 ? 14 HELX_P HELX_P3 3 PRO A 40 ? ALA A 47 ? PRO A 42 ALA A 49 1 ? 8 HELX_P HELX_P4 4 ASP A 48 ? GLY A 61 ? ASP A 50 GLY A 63 1 ? 14 HELX_P HELX_P5 5 GLY A 61 ? ILE A 76 ? GLY A 63 ILE A 78 1 ? 16 HELX_P HELX_P6 6 ARG A 78 ? ASP A 88 ? ARG A 80 ASP A 90 1 ? 11 HELX_P HELX_P7 7 SER B 3 ? ASP B 14 ? SER B 5 ASP B 16 1 ? 12 HELX_P HELX_P8 8 GLU B 16 ? ASP B 29 ? GLU B 18 ASP B 31 1 ? 14 HELX_P HELX_P9 9 PRO B 40 ? ALA B 47 ? PRO B 42 ALA B 49 1 ? 8 HELX_P HELX_P10 10 ASP B 48 ? GLY B 61 ? ASP B 50 GLY B 63 1 ? 14 HELX_P HELX_P11 11 GLY B 61 ? ILE B 76 ? GLY B 63 ILE B 78 1 ? 16 HELX_P HELX_P12 12 ARG B 78 ? ASP B 88 ? ARG B 80 ASP B 90 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 6 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 106 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 8 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 108 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.174 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3QF2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QF2 _atom_sites.fract_transf_matrix[1][1] 0.023791 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007556 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016656 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020362 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 3 ? ? ? A . n A 1 2 ALA 2 4 ? ? ? A . n A 1 3 SER 3 5 5 SER SER A . n A 1 4 THR 4 6 6 THR THR A . n A 1 5 ARG 5 7 7 ARG ARG A . n A 1 6 CYS 6 8 8 CYS CYS A . n A 1 7 LYS 7 9 9 LYS LYS A . n A 1 8 LEU 8 10 10 LEU LEU A . n A 1 9 ALA 9 11 11 ALA ALA A . n A 1 10 ARG 10 12 12 ARG ARG A . n A 1 11 TYR 11 13 13 TYR TYR A . n A 1 12 LEU 12 14 14 LEU LEU A . n A 1 13 GLU 13 15 15 GLU GLU A . n A 1 14 ASP 14 16 16 ASP ASP A . n A 1 15 LEU 15 17 17 LEU LEU A . n A 1 16 GLU 16 18 18 GLU GLU A . n A 1 17 ASP 17 19 19 ASP ASP A . n A 1 18 VAL 18 20 20 VAL VAL A . n A 1 19 ASP 19 21 21 ASP ASP A . n A 1 20 LEU 20 22 22 LEU LEU A . n A 1 21 LYS 21 23 23 LYS LYS A . n A 1 22 LYS 22 24 24 LYS LYS A . n A 1 23 PHE 23 25 25 PHE PHE A . n A 1 24 LYS 24 26 26 LYS LYS A . n A 1 25 MET 25 27 27 MET MET A . n A 1 26 HIS 26 28 28 HIS HIS A . n A 1 27 LEU 27 29 29 LEU LEU A . n A 1 28 GLU 28 30 30 GLU GLU A . n A 1 29 ASP 29 31 31 ASP ASP A . n A 1 30 TYR 30 32 32 TYR TYR A . n A 1 31 PRO 31 33 33 PRO PRO A . n A 1 32 PRO 32 34 34 PRO PRO A . n A 1 33 GLN 33 35 35 GLN GLN A . n A 1 34 LYS 34 36 36 LYS LYS A . n A 1 35 GLY 35 37 37 GLY GLY A . n A 1 36 CYS 36 38 38 CYS CYS A . n A 1 37 ILE 37 39 39 ILE ILE A . n A 1 38 PRO 38 40 40 PRO PRO A . n A 1 39 LEU 39 41 41 LEU LEU A . n A 1 40 PRO 40 42 42 PRO PRO A . n A 1 41 ARG 41 43 43 ARG ARG A . n A 1 42 GLY 42 44 44 GLY GLY A . n A 1 43 GLN 43 45 45 GLN GLN A . n A 1 44 THR 44 46 46 THR THR A . n A 1 45 GLU 45 47 47 GLU GLU A . n A 1 46 LYS 46 48 48 LYS LYS A . n A 1 47 ALA 47 49 49 ALA ALA A . n A 1 48 ASP 48 50 50 ASP ASP A . n A 1 49 HIS 49 51 51 HIS HIS A . n A 1 50 VAL 50 52 52 VAL VAL A . n A 1 51 ASP 51 53 53 ASP ASP A . n A 1 52 LEU 52 54 54 LEU LEU A . n A 1 53 ALA 53 55 55 ALA ALA A . n A 1 54 THR 54 56 56 THR THR A . n A 1 55 LEU 55 57 57 LEU LEU A . n A 1 56 MET 56 58 58 MET MET A . n A 1 57 ILE 57 59 59 ILE ILE A . n A 1 58 ASP 58 60 60 ASP ASP A . n A 1 59 PHE 59 61 61 PHE PHE A . n A 1 60 ASN 60 62 62 ASN ASN A . n A 1 61 GLY 61 63 63 GLY GLY A . n A 1 62 GLU 62 64 64 GLU GLU A . n A 1 63 GLU 63 65 65 GLU GLU A . n A 1 64 LYS 64 66 66 LYS LYS A . n A 1 65 ALA 65 67 67 ALA ALA A . n A 1 66 TRP 66 68 68 TRP TRP A . n A 1 67 ALA 67 69 69 ALA ALA A . n A 1 68 MET 68 70 70 MET MET A . n A 1 69 ALA 69 71 71 ALA ALA A . n A 1 70 VAL 70 72 72 VAL VAL A . n A 1 71 TRP 71 73 73 TRP TRP A . n A 1 72 ILE 72 74 74 ILE ILE A . n A 1 73 PHE 73 75 75 PHE PHE A . n A 1 74 ALA 74 76 76 ALA ALA A . n A 1 75 ALA 75 77 77 ALA ALA A . n A 1 76 ILE 76 78 78 ILE ILE A . n A 1 77 ASN 77 79 79 ASN ASN A . n A 1 78 ARG 78 80 80 ARG ARG A . n A 1 79 ARG 79 81 81 ARG ARG A . n A 1 80 ASP 80 82 82 ASP ASP A . n A 1 81 LEU 81 83 83 LEU LEU A . n A 1 82 TYR 82 84 84 TYR TYR A . n A 1 83 GLU 83 85 85 GLU GLU A . n A 1 84 LYS 84 86 86 LYS LYS A . n A 1 85 ALA 85 87 87 ALA ALA A . n A 1 86 LYS 86 88 88 LYS LYS A . n A 1 87 ARG 87 89 89 ARG ARG A . n A 1 88 ASP 88 90 90 ASP ASP A . n A 1 89 GLU 89 91 91 GLU GLU A . n A 1 90 PRO 90 92 92 PRO PRO A . n A 1 91 LYS 91 93 93 LYS LYS A . n A 1 92 TRP 92 94 94 TRP TRP A . n A 1 93 GLY 93 95 ? ? ? A . n A 1 94 SER 94 96 ? ? ? A . n A 1 95 ASP 95 97 ? ? ? A . n A 1 96 ASN 96 98 ? ? ? A . n A 1 97 ALA 97 99 ? ? ? A . n A 1 98 ARG 98 100 ? ? ? A . n A 1 99 VAL 99 101 ? ? ? A . n A 1 100 SER 100 102 ? ? ? A . n A 1 101 ASN 101 103 ? ? ? A . n A 1 102 PRO 102 104 ? ? ? A . n A 1 103 THR 103 105 ? ? ? A . n A 1 104 VAL 104 106 ? ? ? A . n A 1 105 ILE 105 107 ? ? ? A . n A 1 106 CYS 106 108 ? ? ? A . n A 1 107 GLN 107 109 ? ? ? A . n A 1 108 GLU 108 110 ? ? ? A . n A 1 109 ASP 109 111 ? ? ? A . n A 1 110 SER 110 112 ? ? ? A . n B 1 1 MET 1 3 ? ? ? B . n B 1 2 ALA 2 4 ? ? ? B . n B 1 3 SER 3 5 5 SER SER B . n B 1 4 THR 4 6 6 THR THR B . n B 1 5 ARG 5 7 7 ARG ARG B . n B 1 6 CYS 6 8 8 CYS CYS B . n B 1 7 LYS 7 9 9 LYS LYS B . n B 1 8 LEU 8 10 10 LEU LEU B . n B 1 9 ALA 9 11 11 ALA ALA B . n B 1 10 ARG 10 12 12 ARG ARG B . n B 1 11 TYR 11 13 13 TYR TYR B . n B 1 12 LEU 12 14 14 LEU LEU B . n B 1 13 GLU 13 15 15 GLU GLU B . n B 1 14 ASP 14 16 16 ASP ASP B . n B 1 15 LEU 15 17 17 LEU LEU B . n B 1 16 GLU 16 18 18 GLU GLU B . n B 1 17 ASP 17 19 19 ASP ASP B . n B 1 18 VAL 18 20 20 VAL VAL B . n B 1 19 ASP 19 21 21 ASP ASP B . n B 1 20 LEU 20 22 22 LEU LEU B . n B 1 21 LYS 21 23 23 LYS LYS B . n B 1 22 LYS 22 24 24 LYS LYS B . n B 1 23 PHE 23 25 25 PHE PHE B . n B 1 24 LYS 24 26 26 LYS LYS B . n B 1 25 MET 25 27 27 MET MET B . n B 1 26 HIS 26 28 28 HIS HIS B . n B 1 27 LEU 27 29 29 LEU LEU B . n B 1 28 GLU 28 30 30 GLU GLU B . n B 1 29 ASP 29 31 31 ASP ASP B . n B 1 30 TYR 30 32 32 TYR TYR B . n B 1 31 PRO 31 33 33 PRO PRO B . n B 1 32 PRO 32 34 34 PRO PRO B . n B 1 33 GLN 33 35 35 GLN GLN B . n B 1 34 LYS 34 36 36 LYS LYS B . n B 1 35 GLY 35 37 37 GLY GLY B . n B 1 36 CYS 36 38 38 CYS CYS B . n B 1 37 ILE 37 39 39 ILE ILE B . n B 1 38 PRO 38 40 40 PRO PRO B . n B 1 39 LEU 39 41 41 LEU LEU B . n B 1 40 PRO 40 42 42 PRO PRO B . n B 1 41 ARG 41 43 43 ARG ARG B . n B 1 42 GLY 42 44 44 GLY GLY B . n B 1 43 GLN 43 45 45 GLN GLN B . n B 1 44 THR 44 46 46 THR THR B . n B 1 45 GLU 45 47 47 GLU GLU B . n B 1 46 LYS 46 48 48 LYS LYS B . n B 1 47 ALA 47 49 49 ALA ALA B . n B 1 48 ASP 48 50 50 ASP ASP B . n B 1 49 HIS 49 51 51 HIS HIS B . n B 1 50 VAL 50 52 52 VAL VAL B . n B 1 51 ASP 51 53 53 ASP ASP B . n B 1 52 LEU 52 54 54 LEU LEU B . n B 1 53 ALA 53 55 55 ALA ALA B . n B 1 54 THR 54 56 56 THR THR B . n B 1 55 LEU 55 57 57 LEU LEU B . n B 1 56 MET 56 58 58 MET MET B . n B 1 57 ILE 57 59 59 ILE ILE B . n B 1 58 ASP 58 60 60 ASP ASP B . n B 1 59 PHE 59 61 61 PHE PHE B . n B 1 60 ASN 60 62 62 ASN ASN B . n B 1 61 GLY 61 63 63 GLY GLY B . n B 1 62 GLU 62 64 64 GLU GLU B . n B 1 63 GLU 63 65 65 GLU GLU B . n B 1 64 LYS 64 66 66 LYS LYS B . n B 1 65 ALA 65 67 67 ALA ALA B . n B 1 66 TRP 66 68 68 TRP TRP B . n B 1 67 ALA 67 69 69 ALA ALA B . n B 1 68 MET 68 70 70 MET MET B . n B 1 69 ALA 69 71 71 ALA ALA B . n B 1 70 VAL 70 72 72 VAL VAL B . n B 1 71 TRP 71 73 73 TRP TRP B . n B 1 72 ILE 72 74 74 ILE ILE B . n B 1 73 PHE 73 75 75 PHE PHE B . n B 1 74 ALA 74 76 76 ALA ALA B . n B 1 75 ALA 75 77 77 ALA ALA B . n B 1 76 ILE 76 78 78 ILE ILE B . n B 1 77 ASN 77 79 79 ASN ASN B . n B 1 78 ARG 78 80 80 ARG ARG B . n B 1 79 ARG 79 81 81 ARG ARG B . n B 1 80 ASP 80 82 82 ASP ASP B . n B 1 81 LEU 81 83 83 LEU LEU B . n B 1 82 TYR 82 84 84 TYR TYR B . n B 1 83 GLU 83 85 85 GLU GLU B . n B 1 84 LYS 84 86 86 LYS LYS B . n B 1 85 ALA 85 87 87 ALA ALA B . n B 1 86 LYS 86 88 88 LYS LYS B . n B 1 87 ARG 87 89 89 ARG ARG B . n B 1 88 ASP 88 90 90 ASP ASP B . n B 1 89 GLU 89 91 91 GLU GLU B . n B 1 90 PRO 90 92 92 PRO PRO B . n B 1 91 LYS 91 93 93 LYS LYS B . n B 1 92 TRP 92 94 94 TRP TRP B . n B 1 93 GLY 93 95 95 GLY GLY B . n B 1 94 SER 94 96 96 SER SER B . n B 1 95 ASP 95 97 97 ASP ASP B . n B 1 96 ASN 96 98 98 ASN ASN B . n B 1 97 ALA 97 99 99 ALA ALA B . n B 1 98 ARG 98 100 100 ARG ARG B . n B 1 99 VAL 99 101 101 VAL VAL B . n B 1 100 SER 100 102 102 SER SER B . n B 1 101 ASN 101 103 103 ASN ASN B . n B 1 102 PRO 102 104 104 PRO PRO B . n B 1 103 THR 103 105 105 THR THR B . n B 1 104 VAL 104 106 106 VAL VAL B . n B 1 105 ILE 105 107 107 ILE ILE B . n B 1 106 CYS 106 108 108 CYS CYS B . n B 1 107 GLN 107 109 109 GLN GLN B . n B 1 108 GLU 108 110 110 GLU GLU B . n B 1 109 ASP 109 111 ? ? ? B . n B 1 110 SER 110 112 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-31 2 'Structure model' 1 1 2011-11-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -22.1236 29.8613 27.1542 0.0257 0.0216 0.0312 -0.0068 0.0028 -0.0064 1.9971 0.6282 3.7420 -0.2259 0.6922 -0.3566 0.0088 0.1340 0.0108 -0.0612 -0.0380 -0.0444 0.0173 0.0005 0.0292 'X-RAY DIFFRACTION' 2 ? refined 3.6951 27.2340 46.0876 0.0461 0.0009 0.0464 0.0011 -0.0002 0.0048 1.6495 0.9057 1.6630 -0.0667 0.1012 -0.0212 -0.0293 0.0040 -0.0557 0.0413 -0.0019 0.0138 0.0800 0.0280 0.0311 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 5 ? ? A 94 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 5 ? ? B 110 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SOLVE phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 27 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 27 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 27 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 81.09 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation -19.11 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 80 ? ? -103.58 72.08 2 1 LYS B 36 ? ? 10.71 41.30 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 3 ? A MET 1 2 1 Y 1 A ALA 4 ? A ALA 2 3 1 Y 1 A GLY 95 ? A GLY 93 4 1 Y 1 A SER 96 ? A SER 94 5 1 Y 1 A ASP 97 ? A ASP 95 6 1 Y 1 A ASN 98 ? A ASN 96 7 1 Y 1 A ALA 99 ? A ALA 97 8 1 Y 1 A ARG 100 ? A ARG 98 9 1 Y 1 A VAL 101 ? A VAL 99 10 1 Y 1 A SER 102 ? A SER 100 11 1 Y 1 A ASN 103 ? A ASN 101 12 1 Y 1 A PRO 104 ? A PRO 102 13 1 Y 1 A THR 105 ? A THR 103 14 1 Y 1 A VAL 106 ? A VAL 104 15 1 Y 1 A ILE 107 ? A ILE 105 16 1 Y 1 A CYS 108 ? A CYS 106 17 1 Y 1 A GLN 109 ? A GLN 107 18 1 Y 1 A GLU 110 ? A GLU 108 19 1 Y 1 A ASP 111 ? A ASP 109 20 1 Y 1 A SER 112 ? A SER 110 21 1 Y 1 B MET 3 ? B MET 1 22 1 Y 1 B ALA 4 ? B ALA 2 23 1 Y 1 B ASP 111 ? B ASP 109 24 1 Y 1 B SER 112 ? B SER 110 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2 2 HOH HOH A . C 2 HOH 2 113 113 HOH HOH A . C 2 HOH 3 114 114 HOH HOH A . C 2 HOH 4 115 115 HOH HOH A . C 2 HOH 5 116 116 HOH HOH A . C 2 HOH 6 117 117 HOH HOH A . C 2 HOH 7 118 118 HOH HOH A . C 2 HOH 8 119 119 HOH HOH A . C 2 HOH 9 120 120 HOH HOH A . C 2 HOH 10 121 121 HOH HOH A . C 2 HOH 11 122 122 HOH HOH A . C 2 HOH 12 123 123 HOH HOH A . C 2 HOH 13 124 124 HOH HOH A . C 2 HOH 14 125 125 HOH HOH A . C 2 HOH 15 126 126 HOH HOH A . C 2 HOH 16 127 127 HOH HOH A . C 2 HOH 17 128 128 HOH HOH A . C 2 HOH 18 129 129 HOH HOH A . C 2 HOH 19 130 130 HOH HOH A . C 2 HOH 20 131 131 HOH HOH A . C 2 HOH 21 132 132 HOH HOH A . C 2 HOH 22 133 133 HOH HOH A . C 2 HOH 23 134 134 HOH HOH A . C 2 HOH 24 135 135 HOH HOH A . C 2 HOH 25 136 136 HOH HOH A . C 2 HOH 26 137 137 HOH HOH A . C 2 HOH 27 138 138 HOH HOH A . C 2 HOH 28 139 139 HOH HOH A . C 2 HOH 29 140 140 HOH HOH A . C 2 HOH 30 141 141 HOH HOH A . C 2 HOH 31 142 142 HOH HOH A . C 2 HOH 32 143 143 HOH HOH A . C 2 HOH 33 144 144 HOH HOH A . C 2 HOH 34 145 145 HOH HOH A . C 2 HOH 35 146 146 HOH HOH A . C 2 HOH 36 147 147 HOH HOH A . C 2 HOH 37 148 148 HOH HOH A . C 2 HOH 38 149 149 HOH HOH A . C 2 HOH 39 150 150 HOH HOH A . C 2 HOH 40 151 151 HOH HOH A . C 2 HOH 41 152 152 HOH HOH A . C 2 HOH 42 153 153 HOH HOH A . C 2 HOH 43 154 154 HOH HOH A . C 2 HOH 44 155 155 HOH HOH A . C 2 HOH 45 156 156 HOH HOH A . C 2 HOH 46 157 157 HOH HOH A . C 2 HOH 47 158 158 HOH HOH A . C 2 HOH 48 159 159 HOH HOH A . C 2 HOH 49 160 160 HOH HOH A . C 2 HOH 50 161 161 HOH HOH A . C 2 HOH 51 162 162 HOH HOH A . C 2 HOH 52 163 163 HOH HOH A . C 2 HOH 53 164 164 HOH HOH A . C 2 HOH 54 165 165 HOH HOH A . C 2 HOH 55 166 166 HOH HOH A . C 2 HOH 56 167 167 HOH HOH A . C 2 HOH 57 168 168 HOH HOH A . C 2 HOH 58 170 170 HOH HOH A . C 2 HOH 59 171 171 HOH HOH A . C 2 HOH 60 172 172 HOH HOH A . C 2 HOH 61 173 173 HOH HOH A . C 2 HOH 62 174 174 HOH HOH A . C 2 HOH 63 175 175 HOH HOH A . C 2 HOH 64 176 176 HOH HOH A . C 2 HOH 65 177 177 HOH HOH A . C 2 HOH 66 178 178 HOH HOH A . C 2 HOH 67 179 179 HOH HOH A . C 2 HOH 68 180 180 HOH HOH A . C 2 HOH 69 181 181 HOH HOH A . C 2 HOH 70 182 182 HOH HOH A . C 2 HOH 71 183 183 HOH HOH A . C 2 HOH 72 185 185 HOH HOH A . C 2 HOH 73 186 186 HOH HOH A . C 2 HOH 74 187 187 HOH HOH A . C 2 HOH 75 188 188 HOH HOH A . C 2 HOH 76 189 189 HOH HOH A . C 2 HOH 77 190 190 HOH HOH A . C 2 HOH 78 191 191 HOH HOH A . C 2 HOH 79 192 192 HOH HOH A . C 2 HOH 80 193 193 HOH HOH A . C 2 HOH 81 194 194 HOH HOH A . C 2 HOH 82 195 195 HOH HOH A . C 2 HOH 83 196 196 HOH HOH A . C 2 HOH 84 197 197 HOH HOH A . C 2 HOH 85 198 198 HOH HOH A . C 2 HOH 86 199 199 HOH HOH A . C 2 HOH 87 200 200 HOH HOH A . C 2 HOH 88 201 201 HOH HOH A . C 2 HOH 89 202 202 HOH HOH A . C 2 HOH 90 203 203 HOH HOH A . C 2 HOH 91 204 204 HOH HOH A . C 2 HOH 92 206 206 HOH HOH A . C 2 HOH 93 207 207 HOH HOH A . C 2 HOH 94 208 208 HOH HOH A . C 2 HOH 95 211 211 HOH HOH A . C 2 HOH 96 215 215 HOH HOH A . C 2 HOH 97 217 217 HOH HOH A . C 2 HOH 98 218 218 HOH HOH A . C 2 HOH 99 219 219 HOH HOH A . C 2 HOH 100 220 220 HOH HOH A . C 2 HOH 101 221 221 HOH HOH A . C 2 HOH 102 222 222 HOH HOH A . C 2 HOH 103 227 227 HOH HOH A . C 2 HOH 104 229 229 HOH HOH A . C 2 HOH 105 231 231 HOH HOH A . C 2 HOH 106 232 232 HOH HOH A . C 2 HOH 107 233 233 HOH HOH A . C 2 HOH 108 234 234 HOH HOH A . C 2 HOH 109 235 235 HOH HOH A . C 2 HOH 110 236 236 HOH HOH A . C 2 HOH 111 238 238 HOH HOH A . C 2 HOH 112 239 239 HOH HOH A . C 2 HOH 113 242 242 HOH HOH A . C 2 HOH 114 243 243 HOH HOH A . C 2 HOH 115 245 245 HOH HOH A . C 2 HOH 116 246 246 HOH HOH A . C 2 HOH 117 249 249 HOH HOH A . C 2 HOH 118 251 251 HOH HOH A . C 2 HOH 119 254 254 HOH HOH A . C 2 HOH 120 255 255 HOH HOH A . C 2 HOH 121 257 257 HOH HOH A . D 2 HOH 1 1 1 HOH HOH B . D 2 HOH 2 113 113 HOH HOH B . D 2 HOH 3 114 114 HOH HOH B . D 2 HOH 4 115 115 HOH HOH B . D 2 HOH 5 116 116 HOH HOH B . D 2 HOH 6 117 117 HOH HOH B . D 2 HOH 7 118 118 HOH HOH B . D 2 HOH 8 119 119 HOH HOH B . D 2 HOH 9 120 120 HOH HOH B . D 2 HOH 10 121 121 HOH HOH B . D 2 HOH 11 122 122 HOH HOH B . D 2 HOH 12 123 123 HOH HOH B . D 2 HOH 13 125 125 HOH HOH B . D 2 HOH 14 126 126 HOH HOH B . D 2 HOH 15 127 127 HOH HOH B . D 2 HOH 16 128 128 HOH HOH B . D 2 HOH 17 129 129 HOH HOH B . D 2 HOH 18 130 130 HOH HOH B . D 2 HOH 19 131 131 HOH HOH B . D 2 HOH 20 132 132 HOH HOH B . D 2 HOH 21 133 133 HOH HOH B . D 2 HOH 22 134 134 HOH HOH B . D 2 HOH 23 135 135 HOH HOH B . D 2 HOH 24 136 136 HOH HOH B . D 2 HOH 25 137 137 HOH HOH B . D 2 HOH 26 138 138 HOH HOH B . D 2 HOH 27 139 139 HOH HOH B . D 2 HOH 28 140 140 HOH HOH B . D 2 HOH 29 141 141 HOH HOH B . D 2 HOH 30 142 142 HOH HOH B . D 2 HOH 31 143 143 HOH HOH B . D 2 HOH 32 145 145 HOH HOH B . D 2 HOH 33 146 146 HOH HOH B . D 2 HOH 34 147 147 HOH HOH B . D 2 HOH 35 148 148 HOH HOH B . D 2 HOH 36 149 149 HOH HOH B . D 2 HOH 37 150 150 HOH HOH B . D 2 HOH 38 151 151 HOH HOH B . D 2 HOH 39 152 152 HOH HOH B . D 2 HOH 40 153 153 HOH HOH B . D 2 HOH 41 154 154 HOH HOH B . D 2 HOH 42 155 155 HOH HOH B . D 2 HOH 43 156 156 HOH HOH B . D 2 HOH 44 157 157 HOH HOH B . D 2 HOH 45 158 158 HOH HOH B . D 2 HOH 46 159 159 HOH HOH B . D 2 HOH 47 160 160 HOH HOH B . D 2 HOH 48 161 161 HOH HOH B . D 2 HOH 49 162 162 HOH HOH B . D 2 HOH 50 163 163 HOH HOH B . D 2 HOH 51 164 164 HOH HOH B . D 2 HOH 52 165 165 HOH HOH B . D 2 HOH 53 166 166 HOH HOH B . D 2 HOH 54 167 167 HOH HOH B . D 2 HOH 55 168 168 HOH HOH B . D 2 HOH 56 169 169 HOH HOH B . D 2 HOH 57 170 170 HOH HOH B . D 2 HOH 58 172 172 HOH HOH B . D 2 HOH 59 173 173 HOH HOH B . D 2 HOH 60 174 174 HOH HOH B . D 2 HOH 61 175 175 HOH HOH B . D 2 HOH 62 176 176 HOH HOH B . D 2 HOH 63 177 177 HOH HOH B . D 2 HOH 64 178 178 HOH HOH B . D 2 HOH 65 179 179 HOH HOH B . D 2 HOH 66 180 180 HOH HOH B . D 2 HOH 67 181 181 HOH HOH B . D 2 HOH 68 182 182 HOH HOH B . D 2 HOH 69 183 183 HOH HOH B . D 2 HOH 70 184 184 HOH HOH B . D 2 HOH 71 185 185 HOH HOH B . D 2 HOH 72 186 186 HOH HOH B . D 2 HOH 73 187 187 HOH HOH B . D 2 HOH 74 188 188 HOH HOH B . D 2 HOH 75 189 189 HOH HOH B . D 2 HOH 76 190 190 HOH HOH B . D 2 HOH 77 191 191 HOH HOH B . D 2 HOH 78 192 192 HOH HOH B . D 2 HOH 79 193 193 HOH HOH B . D 2 HOH 80 194 194 HOH HOH B . D 2 HOH 81 195 195 HOH HOH B . D 2 HOH 82 196 196 HOH HOH B . D 2 HOH 83 197 197 HOH HOH B . D 2 HOH 84 198 198 HOH HOH B . D 2 HOH 85 199 199 HOH HOH B . D 2 HOH 86 200 200 HOH HOH B . D 2 HOH 87 201 201 HOH HOH B . D 2 HOH 88 202 202 HOH HOH B . D 2 HOH 89 203 203 HOH HOH B . D 2 HOH 90 205 205 HOH HOH B . D 2 HOH 91 206 206 HOH HOH B . D 2 HOH 92 207 207 HOH HOH B . D 2 HOH 93 208 208 HOH HOH B . D 2 HOH 94 209 209 HOH HOH B . D 2 HOH 95 210 210 HOH HOH B . D 2 HOH 96 211 211 HOH HOH B . D 2 HOH 97 212 212 HOH HOH B . D 2 HOH 98 213 213 HOH HOH B . D 2 HOH 99 214 214 HOH HOH B . D 2 HOH 100 215 215 HOH HOH B . D 2 HOH 101 216 216 HOH HOH B . D 2 HOH 102 217 217 HOH HOH B . D 2 HOH 103 218 218 HOH HOH B . D 2 HOH 104 219 219 HOH HOH B . D 2 HOH 105 220 220 HOH HOH B . D 2 HOH 106 221 221 HOH HOH B . D 2 HOH 107 222 222 HOH HOH B . D 2 HOH 108 223 223 HOH HOH B . D 2 HOH 109 224 224 HOH HOH B . D 2 HOH 110 225 225 HOH HOH B . D 2 HOH 111 226 226 HOH HOH B . D 2 HOH 112 227 227 HOH HOH B . D 2 HOH 113 228 228 HOH HOH B . D 2 HOH 114 229 229 HOH HOH B . D 2 HOH 115 230 230 HOH HOH B . D 2 HOH 116 231 231 HOH HOH B . D 2 HOH 117 237 237 HOH HOH B . D 2 HOH 118 240 240 HOH HOH B . D 2 HOH 119 241 241 HOH HOH B . D 2 HOH 120 244 244 HOH HOH B . D 2 HOH 121 247 247 HOH HOH B . D 2 HOH 122 248 248 HOH HOH B . D 2 HOH 123 250 250 HOH HOH B . D 2 HOH 124 252 252 HOH HOH B . D 2 HOH 125 253 253 HOH HOH B . D 2 HOH 126 256 256 HOH HOH B . #