HEADER HYDROLASE 21-JAN-11 3QF7 TITLE THE MRE11:RAD50 COMPLEX FORMS AN ATP DEPENDENT MOLECULAR CLAMP IN DNA TITLE 2 DOUBLE-STRAND BREAK REPAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAD50; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NUCLEOTIDE BINDING DOMAIN, UNP RESIDUES 1-190 AND 686-852; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MRE11; COMPND 8 CHAIN: D, C; COMPND 9 FRAGMENT: C-TERMINAL HELIX-LOOP-HELIX MOTIF, UNP RESIDUES 337-379; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 8 ORGANISM_TAXID: 2336; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABC-ATPASE, ATPASE, MRE11, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MOECKEL,K.LAMMENS REVDAT 3 21-FEB-24 3QF7 1 REMARK SEQADV LINK REVDAT 2 26-JUL-17 3QF7 1 SOURCE REMARK REVDAT 1 20-APR-11 3QF7 0 JRNL AUTH K.LAMMENS,D.J.BEMELEIT,C.MOECKEL,E.CLAUSING,A.SCHELE, JRNL AUTH 2 S.HARTUNG,C.B.SCHILLER,M.LUCAS,C.ANGERMUELLER,J.SOEDING, JRNL AUTH 3 K.STRAESSER,K.P.HOPFNER JRNL TITL THE MRE11:RAD50 STRUCTURE SHOWS AN ATP-DEPENDENT MOLECULAR JRNL TITL 2 CLAMP IN DNA DOUBLE-STRAND BREAK REPAIR. JRNL REF CELL(CAMBRIDGE,MASS.) V. 145 54 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 21458667 JRNL DOI 10.1016/J.CELL.2011.02.038 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 64738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1766 - 4.5764 0.94 4362 147 0.1735 0.1987 REMARK 3 2 4.5764 - 3.6335 0.98 4544 147 0.1334 0.1440 REMARK 3 3 3.6335 - 3.1745 0.98 4550 143 0.1451 0.1788 REMARK 3 4 3.1745 - 2.8844 0.98 4488 144 0.1578 0.1659 REMARK 3 5 2.8844 - 2.6777 0.97 4549 141 0.1619 0.2137 REMARK 3 6 2.6777 - 2.5199 0.97 4495 146 0.1658 0.2187 REMARK 3 7 2.5199 - 2.3937 0.97 4516 151 0.1655 0.2179 REMARK 3 8 2.3937 - 2.2896 0.97 4477 137 0.1582 0.2449 REMARK 3 9 2.2896 - 2.2014 0.97 4483 144 0.1517 0.1895 REMARK 3 10 2.2014 - 2.1255 0.97 4458 136 0.1424 0.1753 REMARK 3 11 2.1255 - 2.0590 0.96 4484 152 0.1507 0.1800 REMARK 3 12 2.0590 - 2.0002 0.96 4489 136 0.1541 0.1865 REMARK 3 13 2.0002 - 1.9475 0.96 4440 151 0.1593 0.2082 REMARK 3 14 1.9475 - 1.9000 0.96 4397 131 0.1745 0.2259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 59.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.95110 REMARK 3 B22 (A**2) : 1.15340 REMARK 3 B33 (A**2) : -3.10450 REMARK 3 B12 (A**2) : -0.43670 REMARK 3 B13 (A**2) : 1.29250 REMARK 3 B23 (A**2) : -1.27920 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6657 REMARK 3 ANGLE : 1.073 8979 REMARK 3 CHIRALITY : 0.070 1005 REMARK 3 PLANARITY : 0.004 1146 REMARK 3 DIHEDRAL : 15.302 2690 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -3.1384 -40.5207 26.7541 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.0835 REMARK 3 T33: 0.0897 T12: -0.0011 REMARK 3 T13: -0.0026 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.1871 L22: 0.1589 REMARK 3 L33: 0.1818 L12: -0.0015 REMARK 3 L13: -0.0364 L23: -0.0413 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.0041 S13: 0.0117 REMARK 3 S21: 0.0028 S22: 0.0210 S23: -0.0122 REMARK 3 S31: -0.0050 S32: -0.0239 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : DIAMOND SAGITALLY FOCUSING GE REMARK 200 (220) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 2000MME, 0.2 M TRIMETHYLAMINE REMARK 280 N-OXIDE, 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 678 REMARK 465 GLY A 679 REMARK 465 ALA A 680 REMARK 465 GLY A 681 REMARK 465 GLY A 682 REMARK 465 ALA A 683 REMARK 465 ASN A 851 REMARK 465 GLU A 852 REMARK 465 GLY B 678 REMARK 465 GLY B 679 REMARK 465 ALA B 680 REMARK 465 GLY B 681 REMARK 465 GLY B 682 REMARK 465 ALA B 683 REMARK 465 GLY B 684 REMARK 465 GLY B 685 REMARK 465 SER B 686 REMARK 465 GLU B 852 REMARK 465 LYS D 343 REMARK 465 GLU D 344 REMARK 465 GLU D 345 REMARK 465 LEU D 346 REMARK 465 ASP D 347 REMARK 465 LYS D 348 REMARK 465 GLU D 384 REMARK 465 ALA D 385 REMARK 465 GLY D 386 REMARK 465 HIS D 387 REMARK 465 HIS D 388 REMARK 465 HIS D 389 REMARK 465 HIS D 390 REMARK 465 HIS D 391 REMARK 465 HIS D 392 REMARK 465 LYS C 343 REMARK 465 GLU C 344 REMARK 465 GLU C 345 REMARK 465 LEU C 346 REMARK 465 ASP C 347 REMARK 465 LYS C 348 REMARK 465 GLU C 384 REMARK 465 ALA C 385 REMARK 465 GLY C 386 REMARK 465 HIS C 387 REMARK 465 HIS C 388 REMARK 465 HIS C 389 REMARK 465 HIS C 390 REMARK 465 HIS C 391 REMARK 465 HIS C 392 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 15 CD NZ REMARK 480 ASN A 16 CG OD1 ND2 REMARK 480 GLU A 20 OE1 OE2 REMARK 480 ASN A 50 CB CG OD1 ND2 REMARK 480 LYS A 95 CD CE NZ REMARK 480 GLU A 105 CG CD OE1 OE2 REMARK 480 ASN A 106 CG OD1 ND2 REMARK 480 LYS A 108 CG CD CE NZ REMARK 480 LYS A 125 CE NZ REMARK 480 LYS A 147 CE NZ REMARK 480 GLU A 171 CD OE1 OE2 REMARK 480 LYS A 172 CE NZ REMARK 480 LYS A 175 CG CD CE NZ REMARK 480 LYS A 183 CD CE NZ REMARK 480 LYS A 689 CE NZ REMARK 480 LYS A 711 CG CD CE NZ REMARK 480 LYS A 728 NZ REMARK 480 ASP A 748 OD1 OD2 REMARK 480 GLU A 749 CD OE1 OE2 REMARK 480 GLU A 806 CD OE1 OE2 REMARK 480 LYS A 816 CE NZ REMARK 480 ARG A 832 CD NE CZ NH1 NH2 REMARK 480 GLU A 833 CG CD OE1 OE2 REMARK 480 ARG B 9 CD NE CZ NH1 NH2 REMARK 480 LYS B 15 CD CE NZ REMARK 480 GLU B 20 CG CD OE1 OE2 REMARK 480 LYS B 95 CD CE NZ REMARK 480 LYS B 99 CE NZ REMARK 480 GLU B 105 CG CD OE1 OE2 REMARK 480 LYS B 108 CE NZ REMARK 480 LYS B 125 CE NZ REMARK 480 LYS B 167 CD CE NZ REMARK 480 GLU B 168 CD OE1 OE2 REMARK 480 LYS B 172 CD CE NZ REMARK 480 LYS B 175 CD CE NZ REMARK 480 LYS B 690 CG CD CE NZ REMARK 480 LYS B 706 CD CE NZ REMARK 480 LYS B 711 CG CD CE NZ REMARK 480 LYS B 728 CE NZ REMARK 480 ARG B 729 CZ NH1 NH2 REMARK 480 GLU B 809 CD OE1 OE2 REMARK 480 ARG B 832 CD NE CZ NH1 NH2 REMARK 480 GLU B 836 CG CD OE1 OE2 REMARK 480 LYS D 356 CD CE NZ REMARK 480 LYS D 360 CE NZ REMARK 480 LYS D 368 CG CD CE NZ REMARK 480 LYS D 381 C CG CD CE NZ REMARK 480 LYS D 382 CD CE NZ REMARK 480 GLU C 357 CB CG CD OE1 OE2 REMARK 480 LYS C 360 CG CD CE NZ REMARK 480 LYS C 361 CB CG CD CE NZ REMARK 480 GLU C 364 N CA CB CG CD OE1 OE2 REMARK 480 GLU C 367 CB CG CD OE1 OE2 REMARK 480 LYS C 368 CB CG CD CE NZ REMARK 480 LYS C 371 CB CG CD CE NZ REMARK 480 LYS C 381 CG CD CE NZ REMARK 480 LYS C 382 CG CD CE NZ REMARK 480 SER C 383 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 -124.06 49.98 REMARK 500 LYS A 15 -64.09 -92.82 REMARK 500 LYS A 115 145.21 86.97 REMARK 500 THR A 137 -68.78 -109.84 REMARK 500 ASN A 713 -116.28 -99.39 REMARK 500 LEU B 12 -122.96 49.57 REMARK 500 ALA B 114 17.41 -144.80 REMARK 500 THR B 137 -65.89 -108.23 REMARK 500 LYS B 711 19.65 52.86 REMARK 500 GLU B 817 -9.37 -57.21 REMARK 500 ASN D 365 35.74 -95.14 REMARK 500 ASN D 365 33.70 -93.60 REMARK 500 ASN C 365 59.73 -93.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 854 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 37 OG REMARK 620 2 GLN A 142 OE1 85.9 REMARK 620 3 ANP A 853 O1G 177.1 92.5 REMARK 620 4 ANP A 853 O2B 87.8 173.1 93.9 REMARK 620 5 HOH A 863 O 90.2 84.7 92.1 92.3 REMARK 620 6 HOH A 876 O 83.4 88.9 94.1 93.3 171.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 854 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 37 OG REMARK 620 2 GLN B 142 OE1 84.6 REMARK 620 3 ANP B 853 O3G 177.6 94.6 REMARK 620 4 ANP B 853 O2B 85.9 168.4 94.5 REMARK 620 5 HOH B 855 O 86.6 84.3 91.1 88.4 REMARK 620 6 HOH B 856 O 86.8 92.0 95.5 94.3 172.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 853 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 854 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 853 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 854 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QG5 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAINS A AND B HAVE RESIDUES 191-685 DELETED FROM THE SEQUENCE DBREF 3QF7 A 1 190 UNP Q9X1X1 RAD50_THEMA 1 190 DBREF 3QF7 A 686 852 UNP Q9X1X1 RAD50_THEMA 686 852 DBREF 3QF7 B 1 190 UNP Q9X1X1 RAD50_THEMA 1 190 DBREF 3QF7 B 686 852 UNP Q9X1X1 RAD50_THEMA 686 852 DBREF 3QF7 D 343 385 UNP Q9X1X0 Q9X1X0_THEMA 337 379 DBREF 3QF7 C 343 385 UNP Q9X1X0 Q9X1X0_THEMA 337 379 SEQADV 3QF7 GLY A 678 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY A 679 UNP Q9X1X1 LINKER SEQADV 3QF7 ALA A 680 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY A 681 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY A 682 UNP Q9X1X1 LINKER SEQADV 3QF7 ALA A 683 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY A 684 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY A 685 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY B 678 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY B 679 UNP Q9X1X1 LINKER SEQADV 3QF7 ALA B 680 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY B 681 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY B 682 UNP Q9X1X1 LINKER SEQADV 3QF7 ALA B 683 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY B 684 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY B 685 UNP Q9X1X1 LINKER SEQADV 3QF7 GLY D 386 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS D 387 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS D 388 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS D 389 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS D 390 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS D 391 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS D 392 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 GLY C 386 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS C 387 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS C 388 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS C 389 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS C 390 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS C 391 UNP Q9X1X0 EXPRESSION TAG SEQADV 3QF7 HIS C 392 UNP Q9X1X0 EXPRESSION TAG SEQRES 1 A 365 MET ARG PRO GLU ARG LEU THR VAL ARG ASN PHE LEU GLY SEQRES 2 A 365 LEU LYS ASN VAL ASP ILE GLU PHE GLN SER GLY ILE THR SEQRES 3 A 365 VAL VAL GLU GLY PRO ASN GLY ALA GLY LYS SER SER LEU SEQRES 4 A 365 PHE GLU ALA ILE SER PHE ALA LEU PHE GLY ASN GLY ILE SEQRES 5 A 365 ARG TYR PRO ASN SER TYR ASP TYR VAL ASN ARG ASN ALA SEQRES 6 A 365 VAL ASP GLY THR ALA ARG LEU VAL PHE GLN PHE GLU ARG SEQRES 7 A 365 GLY GLY LYS ARG TYR GLU ILE ILE ARG GLU ILE ASN ALA SEQRES 8 A 365 LEU GLN ARG LYS HIS ASN ALA LYS LEU SER GLU ILE LEU SEQRES 9 A 365 GLU ASN GLY LYS LYS ALA ALA ILE ALA ALA LYS PRO THR SEQRES 10 A 365 SER VAL LYS GLN GLU VAL GLU LYS ILE LEU GLY ILE GLU SEQRES 11 A 365 HIS ARG THR PHE ILE ARG THR VAL PHE LEU PRO GLN GLY SEQRES 12 A 365 GLU ILE ASP LYS LEU LEU ILE SER PRO PRO SER GLU ILE SEQRES 13 A 365 THR GLU ILE ILE SER ASP VAL PHE GLN SER LYS GLU THR SEQRES 14 A 365 LEU GLU LYS LEU GLU LYS LEU LEU LYS GLU LYS MET LYS SEQRES 15 A 365 LYS LEU GLU ASN GLU ILE SER SER GLY GLY ALA GLY GLY SEQRES 16 A 365 ALA GLY GLY SER LEU GLU LYS LYS LEU LYS GLU MET SER SEQRES 17 A 365 ASP GLU TYR ASN ASN LEU ASP LEU LEU ARG LYS TYR LEU SEQRES 18 A 365 PHE ASP LYS SER ASN PHE SER ARG TYR PHE THR GLY ARG SEQRES 19 A 365 VAL LEU GLU ALA VAL LEU LYS ARG THR LYS ALA TYR LEU SEQRES 20 A 365 ASP ILE LEU THR ASN GLY ARG PHE ASP ILE ASP PHE ASP SEQRES 21 A 365 ASP GLU LYS GLY GLY PHE ILE ILE LYS ASP TRP GLY ILE SEQRES 22 A 365 GLU ARG PRO ALA ARG GLY LEU SER GLY GLY GLU ARG ALA SEQRES 23 A 365 LEU ILE SER ILE SER LEU ALA MET SER LEU ALA GLU VAL SEQRES 24 A 365 ALA SER GLY ARG LEU ASP ALA PHE PHE ILE ASP GLU GLY SEQRES 25 A 365 PHE SER SER LEU ASP THR GLU ASN LYS GLU LYS ILE ALA SEQRES 26 A 365 SER VAL LEU LYS GLU LEU GLU ARG LEU ASN LYS VAL ILE SEQRES 27 A 365 VAL PHE ILE THR HIS ASP ARG GLU PHE SER GLU ALA PHE SEQRES 28 A 365 ASP ARG LYS LEU ARG ILE THR GLY GLY VAL VAL VAL ASN SEQRES 29 A 365 GLU SEQRES 1 B 365 MET ARG PRO GLU ARG LEU THR VAL ARG ASN PHE LEU GLY SEQRES 2 B 365 LEU LYS ASN VAL ASP ILE GLU PHE GLN SER GLY ILE THR SEQRES 3 B 365 VAL VAL GLU GLY PRO ASN GLY ALA GLY LYS SER SER LEU SEQRES 4 B 365 PHE GLU ALA ILE SER PHE ALA LEU PHE GLY ASN GLY ILE SEQRES 5 B 365 ARG TYR PRO ASN SER TYR ASP TYR VAL ASN ARG ASN ALA SEQRES 6 B 365 VAL ASP GLY THR ALA ARG LEU VAL PHE GLN PHE GLU ARG SEQRES 7 B 365 GLY GLY LYS ARG TYR GLU ILE ILE ARG GLU ILE ASN ALA SEQRES 8 B 365 LEU GLN ARG LYS HIS ASN ALA LYS LEU SER GLU ILE LEU SEQRES 9 B 365 GLU ASN GLY LYS LYS ALA ALA ILE ALA ALA LYS PRO THR SEQRES 10 B 365 SER VAL LYS GLN GLU VAL GLU LYS ILE LEU GLY ILE GLU SEQRES 11 B 365 HIS ARG THR PHE ILE ARG THR VAL PHE LEU PRO GLN GLY SEQRES 12 B 365 GLU ILE ASP LYS LEU LEU ILE SER PRO PRO SER GLU ILE SEQRES 13 B 365 THR GLU ILE ILE SER ASP VAL PHE GLN SER LYS GLU THR SEQRES 14 B 365 LEU GLU LYS LEU GLU LYS LEU LEU LYS GLU LYS MET LYS SEQRES 15 B 365 LYS LEU GLU ASN GLU ILE SER SER GLY GLY ALA GLY GLY SEQRES 16 B 365 ALA GLY GLY SER LEU GLU LYS LYS LEU LYS GLU MET SER SEQRES 17 B 365 ASP GLU TYR ASN ASN LEU ASP LEU LEU ARG LYS TYR LEU SEQRES 18 B 365 PHE ASP LYS SER ASN PHE SER ARG TYR PHE THR GLY ARG SEQRES 19 B 365 VAL LEU GLU ALA VAL LEU LYS ARG THR LYS ALA TYR LEU SEQRES 20 B 365 ASP ILE LEU THR ASN GLY ARG PHE ASP ILE ASP PHE ASP SEQRES 21 B 365 ASP GLU LYS GLY GLY PHE ILE ILE LYS ASP TRP GLY ILE SEQRES 22 B 365 GLU ARG PRO ALA ARG GLY LEU SER GLY GLY GLU ARG ALA SEQRES 23 B 365 LEU ILE SER ILE SER LEU ALA MET SER LEU ALA GLU VAL SEQRES 24 B 365 ALA SER GLY ARG LEU ASP ALA PHE PHE ILE ASP GLU GLY SEQRES 25 B 365 PHE SER SER LEU ASP THR GLU ASN LYS GLU LYS ILE ALA SEQRES 26 B 365 SER VAL LEU LYS GLU LEU GLU ARG LEU ASN LYS VAL ILE SEQRES 27 B 365 VAL PHE ILE THR HIS ASP ARG GLU PHE SER GLU ALA PHE SEQRES 28 B 365 ASP ARG LYS LEU ARG ILE THR GLY GLY VAL VAL VAL ASN SEQRES 29 B 365 GLU SEQRES 1 D 50 LYS GLU GLU LEU ASP LYS LEU ASP TYR PHE GLU LEU PHE SEQRES 2 D 50 LYS GLU TYR LEU LYS LYS ARG GLU GLU ASN HIS GLU LYS SEQRES 3 D 50 LEU LEU LYS ILE LEU ASP GLU LEU LEU ASP GLU VAL LYS SEQRES 4 D 50 LYS SER GLU ALA GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 50 LYS GLU GLU LEU ASP LYS LEU ASP TYR PHE GLU LEU PHE SEQRES 2 C 50 LYS GLU TYR LEU LYS LYS ARG GLU GLU ASN HIS GLU LYS SEQRES 3 C 50 LEU LEU LYS ILE LEU ASP GLU LEU LEU ASP GLU VAL LYS SEQRES 4 C 50 LYS SER GLU ALA GLY HIS HIS HIS HIS HIS HIS HET ANP A 853 31 HET MG A 854 1 HET ANP B 853 31 HET MG B 854 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 6 MG 2(MG 2+) FORMUL 9 HOH *487(H2 O) HELIX 1 1 GLY A 35 GLY A 49 1 15 HELIX 2 2 ASN A 56 VAL A 61 5 6 HELIX 3 3 LYS A 115 GLY A 128 1 14 HELIX 4 4 GLU A 130 VAL A 138 1 9 HELIX 5 5 PRO A 152 PHE A 164 1 13 HELIX 6 6 SER A 166 SER A 190 1 25 HELIX 7 7 GLY A 684 ASP A 710 1 27 HELIX 8 8 ASN A 713 ASN A 739 1 27 HELIX 9 9 ARG A 765 LEU A 767 5 3 HELIX 10 10 SER A 768 ALA A 787 1 20 HELIX 11 11 ASP A 804 GLU A 817 1 14 HELIX 12 12 LEU A 818 LEU A 821 5 4 HELIX 13 13 ASP A 831 GLU A 836 1 6 HELIX 14 14 GLY B 35 GLY B 49 1 15 HELIX 15 15 ASN B 56 VAL B 61 5 6 HELIX 16 16 LYS B 115 GLY B 128 1 14 HELIX 17 17 GLU B 130 VAL B 138 1 9 HELIX 18 18 PRO B 152 GLN B 165 1 14 HELIX 19 19 SER B 166 SER B 190 1 25 HELIX 20 20 LEU B 687 ASP B 710 1 24 HELIX 21 21 SER B 712 ASN B 739 1 28 HELIX 22 22 ARG B 765 LEU B 767 5 3 HELIX 23 23 SER B 768 ALA B 787 1 20 HELIX 24 24 ASP B 804 LYS B 816 1 13 HELIX 25 25 GLU B 817 GLU B 819 5 3 HELIX 26 26 ASP B 831 GLU B 836 1 6 HELIX 27 27 ASP D 350 GLU D 363 1 14 HELIX 28 28 ASN D 365 SER D 383 1 19 HELIX 29 29 ASP C 350 LYS C 361 1 12 HELIX 30 30 ASN C 365 SER C 383 1 19 SHEET 1 A 6 LEU A 14 GLU A 20 0 SHEET 2 A 6 ARG A 2 PHE A 11 -1 N LEU A 6 O ILE A 19 SHEET 3 A 6 THR A 69 ARG A 78 -1 O GLU A 77 N ARG A 2 SHEET 4 A 6 LYS A 81 ASN A 90 -1 O ILE A 85 N PHE A 74 SHEET 5 A 6 LYS A 95 ILE A 103 -1 O LYS A 95 N ASN A 90 SHEET 6 A 6 LYS A 109 ALA A 114 -1 O ILE A 112 N LEU A 100 SHEET 1 B 6 PHE A 139 LEU A 140 0 SHEET 2 B 6 ALA A 793 ASP A 797 1 O ASP A 797 N LEU A 140 SHEET 3 B 6 VAL A 824 THR A 829 1 O ILE A 828 N ILE A 796 SHEET 4 B 6 GLY A 24 GLU A 29 1 N VAL A 28 O PHE A 827 SHEET 5 B 6 LYS A 841 THR A 845 1 O LEU A 842 N VAL A 27 SHEET 6 B 6 VAL A 848 VAL A 850 -1 O VAL A 850 N ARG A 843 SHEET 1 C 3 PHE A 742 ASP A 747 0 SHEET 2 C 3 GLY A 752 ASP A 757 -1 O ILE A 754 N ASP A 745 SHEET 3 C 3 ILE A 760 PRO A 763 -1 O ARG A 762 N ILE A 755 SHEET 1 D 6 LEU B 14 GLU B 20 0 SHEET 2 D 6 ARG B 2 PHE B 11 -1 N LEU B 6 O ILE B 19 SHEET 3 D 6 THR B 69 ARG B 78 -1 O GLN B 75 N GLU B 4 SHEET 4 D 6 LYS B 81 ASN B 90 -1 O TYR B 83 N PHE B 76 SHEET 5 D 6 LYS B 95 ILE B 103 -1 O ILE B 103 N ARG B 82 SHEET 6 D 6 LYS B 109 ALA B 113 -1 O ILE B 112 N LEU B 100 SHEET 1 E 6 PHE B 139 LEU B 140 0 SHEET 2 E 6 ALA B 793 ASP B 797 1 O ASP B 797 N LEU B 140 SHEET 3 E 6 VAL B 824 THR B 829 1 O ILE B 828 N ILE B 796 SHEET 4 E 6 GLY B 24 GLU B 29 1 N VAL B 28 O PHE B 827 SHEET 5 E 6 LYS B 841 THR B 845 1 O LEU B 842 N GLU B 29 SHEET 6 E 6 VAL B 848 VAL B 850 -1 O VAL B 850 N ARG B 843 SHEET 1 F 3 PHE B 742 ASP B 747 0 SHEET 2 F 3 GLY B 752 ASP B 757 -1 O ILE B 754 N ASP B 745 SHEET 3 F 3 ILE B 760 PRO B 763 -1 O ARG B 762 N ILE B 755 LINK OG SER A 37 MG MG A 854 1555 1555 2.18 LINK OE1 GLN A 142 MG MG A 854 1555 1555 2.15 LINK O1G ANP A 853 MG MG A 854 1555 1555 2.06 LINK O2B ANP A 853 MG MG A 854 1555 1555 2.13 LINK MG MG A 854 O HOH A 863 1555 1555 2.16 LINK MG MG A 854 O HOH A 876 1555 1555 2.22 LINK OG SER B 37 MG MG B 854 1555 1555 2.18 LINK OE1 GLN B 142 MG MG B 854 1555 1555 2.13 LINK O3G ANP B 853 MG MG B 854 1555 1555 2.07 LINK O2B ANP B 853 MG MG B 854 1555 1555 2.16 LINK MG MG B 854 O HOH B 855 1555 1555 2.23 LINK MG MG B 854 O HOH B 856 1555 1555 2.19 SITE 1 AC1 30 LEU A 12 GLY A 13 PRO A 31 ASN A 32 SITE 2 AC1 30 GLY A 33 ALA A 34 GLY A 35 LYS A 36 SITE 3 AC1 30 SER A 37 SER A 38 ARG A 53 TYR A 54 SITE 4 AC1 30 ASP A 59 VAL A 61 ASN A 62 ARG A 63 SITE 5 AC1 30 GLN A 142 GLU A 798 MG A 854 HOH A 863 SITE 6 AC1 30 HOH A 864 HOH A 874 HOH A 931 ARG B 741 SITE 7 AC1 30 ARG B 762 GLY B 766 SER B 768 GLY B 769 SITE 8 AC1 30 GLY B 770 GLU B 771 SITE 1 AC2 5 SER A 37 GLN A 142 ANP A 853 HOH A 863 SITE 2 AC2 5 HOH A 876 SITE 1 AC3 29 ARG A 741 ARG A 762 GLY A 766 SER A 768 SITE 2 AC3 29 GLY A 769 GLY A 770 GLU A 771 HOH A 882 SITE 3 AC3 29 LEU B 12 GLY B 13 PRO B 31 ASN B 32 SITE 4 AC3 29 GLY B 33 ALA B 34 GLY B 35 LYS B 36 SITE 5 AC3 29 SER B 37 SER B 38 ARG B 53 TYR B 54 SITE 6 AC3 29 ASP B 59 VAL B 61 ASN B 62 ARG B 63 SITE 7 AC3 29 GLN B 142 GLU B 798 MG B 854 HOH B 855 SITE 8 AC3 29 HOH B 881 SITE 1 AC4 5 SER B 37 GLN B 142 ANP B 853 HOH B 855 SITE 2 AC4 5 HOH B 856 CRYST1 49.149 68.400 71.111 98.64 111.14 92.03 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020346 0.000720 0.008117 0.00000 SCALE2 0.000000 0.014629 0.002598 0.00000 SCALE3 0.000000 0.000000 0.015313 0.00000