data_3QF8
# 
_entry.id   3QF8 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.388 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   3QF8         pdb_00003qf8 10.2210/pdb3qf8/pdb 
NDB   NA0938       ?            ?                   
RCSB  RCSB063569   ?            ?                   
WWPDB D_1000063569 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2011-10-19 
2 'Structure model' 1 1 2013-06-26 
3 'Structure model' 1 2 2017-11-08 
4 'Structure model' 1 3 2024-03-20 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Refinement description' 
3 4 'Structure model' 'Data collection'        
4 4 'Structure model' 'Database references'    
5 4 'Structure model' 'Derived calculations'   
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' software               
2 4 'Structure model' chem_comp_atom         
3 4 'Structure model' chem_comp_bond         
4 4 'Structure model' database_2             
5 4 'Structure model' pdbx_struct_conn_angle 
6 4 'Structure model' struct_conn            
7 4 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  3 'Structure model' '_software.classification'                    
2  3 'Structure model' '_software.name'                              
3  3 'Structure model' '_software.version'                           
4  4 'Structure model' '_database_2.pdbx_DOI'                        
5  4 'Structure model' '_database_2.pdbx_database_accession'         
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
9  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
18 4 'Structure model' '_pdbx_struct_conn_angle.value'               
19 4 'Structure model' '_struct_conn.pdbx_dist_value'                
20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
31 4 'Structure model' '_struct_site.pdbx_auth_asym_id'              
32 4 'Structure model' '_struct_site.pdbx_auth_comp_id'              
33 4 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        3QF8 
_pdbx_database_status.recvd_initial_deposition_date   2011-01-21 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    PDBJ 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Cardin, C.J.' 1 
'Hall, J.P.'   2 
# 
_citation.id                        primary 
_citation.title                     
;Structure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligand.
;
_citation.journal_abbrev            Proc.Natl.Acad.Sci.USA 
_citation.journal_volume            108 
_citation.page_first                17610 
_citation.page_last                 17614 
_citation.year                      2011 
_citation.journal_id_ASTM           PNASA6 
_citation.country                   US 
_citation.journal_id_ISSN           0027-8424 
_citation.journal_id_CSD            0040 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   21969542 
_citation.pdbx_database_id_DOI      10.1073/pnas.1108685108 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Hall, J.P.'     1 ? 
primary 
;O'Sullivan, K.
;
2 ? 
primary 'Naseer, A.'     3 ? 
primary 'Smith, J.A.'    4 ? 
primary 'Kelly, J.M.'    5 ? 
primary 'Cardin, C.J.'   6 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'" 3045.992 1  ? ? ? ? 
2 non-polymer syn 'Ru(tap)2(dppz) complex'                 747.732  1  ? ? ? ? 
3 non-polymer syn 'BARIUM ION'                             137.327  1  ? ? ? ? 
4 water       nat water                                    18.015   87 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' 
_entity_poly.pdbx_seq_one_letter_code_can   TCGGCGCCGA 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'Ru(tap)2(dppz) complex' RKL 
3 'BARIUM ION'             BA  
4 water                    HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DT n 
1 2  DC n 
1 3  DG n 
1 4  DG n 
1 5  DC n 
1 6  DG n 
1 7  DC n 
1 8  DC n 
1 9  DG n 
1 10 DA n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
BA  non-polymer   . 'BARIUM ION'                         ? 'Ba 2'             137.327 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P'  331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'   307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P'  347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P'  322.208 
HOH non-polymer   . WATER                                ? 'H2 O'             18.015  
RKL non-polymer   . 'Ru(tap)2(dppz) complex'             ? 'C38 H22 N12 Ru 2' 747.732 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DT 1  1  1  DT T A . n 
A 1 2  DC 2  2  2  DC C A . n 
A 1 3  DG 3  3  3  DG G A . n 
A 1 4  DG 4  4  4  DG G A . n 
A 1 5  DC 5  5  5  DC C A . n 
A 1 6  DG 6  6  6  DG G A . n 
A 1 7  DC 7  7  7  DC C A . n 
A 1 8  DC 8  8  8  DC C A . n 
A 1 9  DG 9  9  9  DG G A . n 
A 1 10 DA 10 10 10 DA A A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 RKL 1  11  1   RKL RKL A . 
C 3 BA  1  12  1   BA  HA  A . 
D 4 HOH 1  13  13  HOH HOH A . 
D 4 HOH 2  14  14  HOH HOH A . 
D 4 HOH 3  15  15  HOH HOH A . 
D 4 HOH 4  16  16  HOH HOH A . 
D 4 HOH 5  17  1   HOH HOH A . 
D 4 HOH 6  18  2   HOH HOH A . 
D 4 HOH 7  19  19  HOH HOH A . 
D 4 HOH 8  20  20  HOH HOH A . 
D 4 HOH 9  21  21  HOH HOH A . 
D 4 HOH 10 22  22  HOH HOH A . 
D 4 HOH 11 23  23  HOH HOH A . 
D 4 HOH 12 24  24  HOH HOH A . 
D 4 HOH 13 25  25  HOH HOH A . 
D 4 HOH 14 26  26  HOH HOH A . 
D 4 HOH 15 27  3   HOH HOH A . 
D 4 HOH 16 28  28  HOH HOH A . 
D 4 HOH 17 29  29  HOH HOH A . 
D 4 HOH 18 30  30  HOH HOH A . 
D 4 HOH 19 31  31  HOH HOH A . 
D 4 HOH 20 32  32  HOH HOH A . 
D 4 HOH 21 33  33  HOH HOH A . 
D 4 HOH 22 34  34  HOH HOH A . 
D 4 HOH 23 35  4   HOH HOH A . 
D 4 HOH 24 36  36  HOH HOH A . 
D 4 HOH 25 37  5   HOH HOH A . 
D 4 HOH 26 38  38  HOH HOH A . 
D 4 HOH 27 39  39  HOH HOH A . 
D 4 HOH 28 40  40  HOH HOH A . 
D 4 HOH 29 41  6   HOH HOH A . 
D 4 HOH 30 42  42  HOH HOH A . 
D 4 HOH 31 43  43  HOH HOH A . 
D 4 HOH 32 44  44  HOH HOH A . 
D 4 HOH 33 45  45  HOH HOH A . 
D 4 HOH 34 46  8   HOH HOH A . 
D 4 HOH 35 47  47  HOH HOH A . 
D 4 HOH 36 48  9   HOH HOH A . 
D 4 HOH 37 49  49  HOH HOH A . 
D 4 HOH 38 50  50  HOH HOH A . 
D 4 HOH 39 51  51  HOH HOH A . 
D 4 HOH 40 52  52  HOH HOH A . 
D 4 HOH 41 53  53  HOH HOH A . 
D 4 HOH 42 54  54  HOH HOH A . 
D 4 HOH 43 55  55  HOH HOH A . 
D 4 HOH 44 56  56  HOH HOH A . 
D 4 HOH 45 57  57  HOH HOH A . 
D 4 HOH 46 58  58  HOH HOH A . 
D 4 HOH 47 59  10  HOH HOH A . 
D 4 HOH 48 60  60  HOH HOH A . 
D 4 HOH 49 61  61  HOH HOH A . 
D 4 HOH 50 62  62  HOH HOH A . 
D 4 HOH 51 63  12  HOH HOH A . 
D 4 HOH 52 64  64  HOH HOH A . 
D 4 HOH 53 66  66  HOH HOH A . 
D 4 HOH 54 67  67  HOH HOH A . 
D 4 HOH 55 68  68  HOH HOH A . 
D 4 HOH 56 69  69  HOH HOH A . 
D 4 HOH 57 70  70  HOH HOH A . 
D 4 HOH 58 72  72  HOH HOH A . 
D 4 HOH 59 73  73  HOH HOH A . 
D 4 HOH 60 74  74  HOH HOH A . 
D 4 HOH 61 75  75  HOH HOH A . 
D 4 HOH 62 76  76  HOH HOH A . 
D 4 HOH 63 77  77  HOH HOH A . 
D 4 HOH 64 78  78  HOH HOH A . 
D 4 HOH 65 79  79  HOH HOH A . 
D 4 HOH 66 80  80  HOH HOH A . 
D 4 HOH 67 81  81  HOH HOH A . 
D 4 HOH 68 82  82  HOH HOH A . 
D 4 HOH 69 83  83  HOH HOH A . 
D 4 HOH 70 84  84  HOH HOH A . 
D 4 HOH 71 85  85  HOH HOH A . 
D 4 HOH 72 86  86  HOH HOH A . 
D 4 HOH 73 88  88  HOH HOH A . 
D 4 HOH 74 89  89  HOH HOH A . 
D 4 HOH 75 95  95  HOH HOH A . 
D 4 HOH 76 108 108 HOH HOH A . 
D 4 HOH 77 114 114 HOH HOH A . 
D 4 HOH 78 115 115 HOH HOH A . 
D 4 HOH 79 122 122 HOH HOH A . 
D 4 HOH 80 123 123 HOH HOH A . 
D 4 HOH 81 124 124 HOH HOH A . 
D 4 HOH 82 125 125 HOH HOH A . 
D 4 HOH 83 133 133 HOH HOH A . 
D 4 HOH 84 134 134 HOH HOH A . 
D 4 HOH 85 136 136 HOH HOH A . 
D 4 HOH 86 137 137 HOH HOH A . 
D 4 HOH 87 138 138 HOH HOH A . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
CrysalisPro 'data collection' .        ? 1 
SHELXCD     phasing           .        ? 2 
SHELXE      'model building'  .        ? 3 
REFMAC      refinement        5.5.0109 ? 4 
CrysalisPro 'data reduction'  .        ? 5 
CrysalisPro 'data scaling'    .        ? 6 
# 
_cell.entry_id           3QF8 
_cell.length_a           42.239 
_cell.length_b           42.239 
_cell.length_c           39.379 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         3QF8 
_symmetry.space_group_name_H-M             'P 43 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                96 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          3QF8 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.88 
_exptl_crystal.density_percent_sol   57.34 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            277 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6 
_exptl_crystal_grow.pdbx_details    
;10% MPD, 40mM Sodium cacodylate, 12mM Spermine hydrochloride, 80mM Sodium chloride, 20mM Barium chloride, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
;
_exptl_crystal_grow.pdbx_pH_range   . 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           180 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   'OXFORD SAPPHIRE CCD' 
_diffrn_detector.pdbx_collection_date   2011-01-13 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'SEALED TUBE' 
_diffrn_source.type                        'OXFORD DIFFRACTION ENHANCE ULTRA' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.5418 
# 
_reflns.entry_id                     3QF8 
_reflns.observed_criterion_sigma_I   3 
_reflns.observed_criterion_sigma_F   3 
_reflns.d_resolution_low             29.87 
_reflns.d_resolution_high            1.723 
_reflns.number_obs                   3309 
_reflns.number_all                   5674 
_reflns.percent_possible_obs         44.02 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
_reflns_shell.d_res_high                  1.72 
_reflns_shell.d_res_low                   1.88 
_reflns_shell.percent_possible_all        38.6 
_reflns_shell.Rmerge_I_obs                ? 
_reflns_shell.pdbx_Rsym_value             ? 
_reflns_shell.meanI_over_sigI_obs         ? 
_reflns_shell.pdbx_redundancy             ? 
_reflns_shell.percent_possible_obs        ? 
_reflns_shell.number_unique_all           ? 
_reflns_shell.number_measured_all         ? 
_reflns_shell.number_measured_obs         ? 
_reflns_shell.number_unique_obs           ? 
_reflns_shell.pdbx_chi_squared            ? 
_reflns_shell.pdbx_rejects                ? 
_reflns_shell.pdbx_netI_over_sigmaI_obs   ? 
_reflns_shell.number_possible             ? 
_reflns_shell.Rmerge_F_all                ? 
_reflns_shell.Rmerge_F_obs                ? 
_reflns_shell.Rmerge_I_all                ? 
_reflns_shell.meanI_over_sigI_all         ? 
_reflns_shell.pdbx_Rrim_I_all             ? 
_reflns_shell.pdbx_Rpim_I_all             ? 
_reflns_shell.pdbx_ordinal                1 
_reflns_shell.pdbx_diffrn_id              1 
# 
_refine.entry_id                                 3QF8 
_refine.ls_number_reflns_obs                     2497 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             13.963 
_refine.ls_d_res_high                            1.73 
_refine.ls_percent_reflns_obs                    86.21 
_refine.ls_R_factor_obs                          0.18440 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.18214 
_refine.ls_R_factor_R_free                       0.23313 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 4.3 
_refine.ls_number_reflns_R_free                  147 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.940 
_refine.correlation_coeff_Fo_to_Fc_free          0.933 
_refine.B_iso_mean                               21.682 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.40 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN DADED IN THE RIDING POSITIONS' 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          SAD 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R_Free                  0.141 
_refine.overall_SU_ML                            0.093 
_refine.overall_SU_B                             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_overall_ESU_R                       0.145 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   202 
_refine_hist.pdbx_number_atoms_ligand         52 
_refine_hist.number_atoms_solvent             87 
_refine_hist.number_atoms_total               341 
_refine_hist.d_res_high                       1.73 
_refine_hist.d_res_low                        13.963 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d             0.021 0.021 ? 290 'X-RAY DIFFRACTION' ? 
r_bond_other_d               ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_angle_refined_deg          2.722 3.000 ? 456 'X-RAY DIFFRACTION' ? 
r_angle_other_deg            ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_1_deg       ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_2_deg       ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_3_deg       ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_4_deg       ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_chiral_restr               0.141 0.200 ? 43  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined         0.022 0.020 ? 155 'X-RAY DIFFRACTION' ? 
r_gen_planes_other           ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_nbd_refined                ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_nbd_other                  ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_nbtor_refined              ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_nbtor_other                ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined        ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_other          ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_metal_ion_refined          ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_metal_ion_other            ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined       ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_other         ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined     ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_other       ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_refined ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_other   ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_mcbond_it                  ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_mcbond_other               ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_mcangle_it                 ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_scbond_it                  2.925 3.000 ? 290 'X-RAY DIFFRACTION' ? 
r_scangle_it                 3.750 4.500 ? 456 'X-RAY DIFFRACTION' ? 
r_rigid_bond_restr           ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_sphericity_free            ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
r_sphericity_bonded          ?     ?     ? ?   'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       1.734 
_refine_ls_shell.d_res_low                        1.778 
_refine_ls_shell.number_reflns_R_work             45 
_refine_ls_shell.R_factor_R_work                  0.294 
_refine_ls_shell.percent_reflns_obs               16.14 
_refine_ls_shell.R_factor_R_free                  0.024 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             1 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
# 
_database_PDB_matrix.entry_id          3QF8 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  3QF8 
_struct.title                     
'X-ray crystal structure of the ruthenium complex [Ru(tap)2(dppz)]2+ bound to d(TCGGCGCCGA) at medium resolution' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        3QF8 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, Intercalation, Kink, Flipped out base, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    3QF8 
_struct_ref.pdbx_db_accession          3QF8 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              3QF8 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 10 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             3QF8 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  10 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       10 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 760  ? 
1 MORE         -4   ? 
1 'SSA (A^2)'  4260 ? 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z        1.0000000000 0.0000000000  0.0000000000 0.0000000000 0.0000000000  1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000  
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 19.6895000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DG 3 N7 ? ? ? 1_555 C BA  . BA ? ? A DG 3  A BA  12  1_555 ? ? ? ? ? ? ?            3.044 ? ? 
metalc2  metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA  . BA ? ? A DG 4  A BA  12  1_555 ? ? ? ? ? ? ?            2.984 ? ? 
metalc3  metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 12 A HOH 14  1_555 ? ? ? ? ? ? ?            2.980 ? ? 
metalc4  metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 12 A HOH 35  1_555 ? ? ? ? ? ? ?            2.442 ? ? 
metalc5  metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 12 A HOH 42  1_555 ? ? ? ? ? ? ?            2.929 ? ? 
metalc6  metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 12 A HOH 55  1_555 ? ? ? ? ? ? ?            2.870 ? ? 
metalc7  metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 12 A HOH 59  1_555 ? ? ? ? ? ? ?            2.616 ? ? 
metalc8  metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 12 A HOH 138 1_555 ? ? ? ? ? ? ?            3.014 ? ? 
hydrog1  hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG  9 N1 ? ? A DC 2  A DG  9   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG  9 O6 ? ? A DC 2  A DG  9   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG  9 N2 ? ? A DC 2  A DG  9   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC  8 N3 ? ? A DG 3  A DC  8   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC  8 O2 ? ? A DG 3  A DC  8   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC  8 N4 ? ? A DG 3  A DC  8   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC  7 N3 ? ? A DG 4  A DC  7   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC  7 O2 ? ? A DG 4  A DC  7   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC  7 N4 ? ? A DG 4  A DC  7   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG  6 N1 ? ? A DC 5  A DG  6   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG  6 O6 ? ? A DC 5  A DG  6   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG  6 N2 ? ? A DC 5  A DG  6   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC  5 N3 ? ? A DG 6  A DC  5   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC  5 O2 ? ? A DG 6  A DC  5   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC  5 N4 ? ? A DG 6  A DC  5   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG  4 N1 ? ? A DC 7  A DG  4   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG  4 O6 ? ? A DC 7  A DG  4   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG  4 N2 ? ? A DC 7  A DG  4   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG  3 N1 ? ? A DC 8  A DG  3   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG  3 O6 ? ? A DC 8  A DG  3   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG  3 N2 ? ? A DC 8  A DG  3   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC  2 N3 ? ? A DG 9  A DC  2   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC  2 O2 ? ? A DG 9  A DC  2   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC  2 N4 ? ? A DG 9  A DC  2   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  N7 ? A DG  3 ? A DG  3  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O6 ? A DG  4 ? A DG  4   ? 1_555 74.7  ? 
2  N7 ? A DG  3 ? A DG  3  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 14  ? 1_555 76.9  ? 
3  O6 ? A DG  4 ? A DG  4  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 14  ? 1_555 128.3 ? 
4  N7 ? A DG  3 ? A DG  3  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 35  ? 1_555 131.2 ? 
5  O6 ? A DG  4 ? A DG  4  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 35  ? 1_555 104.8 ? 
6  O  ? D HOH . ? A HOH 14 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 35  ? 1_555 65.6  ? 
7  N7 ? A DG  3 ? A DG  3  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 42  ? 1_555 68.6  ? 
8  O6 ? A DG  4 ? A DG  4  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 42  ? 1_555 132.4 ? 
9  O  ? D HOH . ? A HOH 14 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 42  ? 1_555 71.1  ? 
10 O  ? D HOH . ? A HOH 35 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 42  ? 1_555 122.1 ? 
11 N7 ? A DG  3 ? A DG  3  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 55  ? 1_555 135.3 ? 
12 O6 ? A DG  4 ? A DG  4  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 55  ? 1_555 63.6  ? 
13 O  ? D HOH . ? A HOH 14 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 55  ? 1_555 142.5 ? 
14 O  ? D HOH . ? A HOH 35 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 55  ? 1_555 77.0  ? 
15 O  ? D HOH . ? A HOH 42 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 55  ? 1_555 131.5 ? 
16 N7 ? A DG  3 ? A DG  3  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 59  ? 1_555 76.4  ? 
17 O6 ? A DG  4 ? A DG  4  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 59  ? 1_555 72.8  ? 
18 O  ? D HOH . ? A HOH 14 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 59  ? 1_555 138.6 ? 
19 O  ? D HOH . ? A HOH 35 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 59  ? 1_555 151.6 ? 
20 O  ? D HOH . ? A HOH 42 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 59  ? 1_555 69.9  ? 
21 O  ? D HOH . ? A HOH 55 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 59  ? 1_555 76.7  ? 
22 N7 ? A DG  3 ? A DG  3  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 138 ? 1_555 131.0 ? 
23 O6 ? A DG  4 ? A DG  4  ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 138 ? 1_555 127.6 ? 
24 O  ? D HOH . ? A HOH 14 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 138 ? 1_555 103.7 ? 
25 O  ? D HOH . ? A HOH 35 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 138 ? 1_555 89.0  ? 
26 O  ? D HOH . ? A HOH 42 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 138 ? 1_555 65.7  ? 
27 O  ? D HOH . ? A HOH 55 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 138 ? 1_555 71.2  ? 
28 O  ? D HOH . ? A HOH 59 ? 1_555 BA ? C BA . ? A BA 12 ? 1_555 O  ? D HOH . ? A HOH 138 ? 1_555 72.3  ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A RKL 11 ? 11 'BINDING SITE FOR RESIDUE RKL A 11' 
AC2 Software A BA  12 ? 8  'BINDING SITE FOR RESIDUE BA A 12'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 11 DT  A 1  ? DT  A 1   . ? 8_555 ? 
2  AC1 11 DC  A 2  ? DC  A 2   . ? 8_555 ? 
3  AC1 11 DG  A 3  ? DG  A 3   . ? 8_555 ? 
4  AC1 11 DG  A 3  ? DG  A 3   . ? 6_545 ? 
5  AC1 11 DG  A 4  ? DG  A 4   . ? 6_545 ? 
6  AC1 11 DC  A 7  ? DC  A 7   . ? 3_544 ? 
7  AC1 11 DC  A 8  ? DC  A 8   . ? 3_544 ? 
8  AC1 11 DG  A 9  ? DG  A 9   . ? 1_555 ? 
9  AC1 11 DA  A 10 ? DA  A 10  . ? 3_544 ? 
10 AC1 11 HOH D .  ? HOH A 77  . ? 4_555 ? 
11 AC1 11 HOH D .  ? HOH A 82  . ? 3_544 ? 
12 AC2 8  DG  A 3  ? DG  A 3   . ? 1_555 ? 
13 AC2 8  DG  A 4  ? DG  A 4   . ? 1_555 ? 
14 AC2 8  HOH D .  ? HOH A 14  . ? 1_555 ? 
15 AC2 8  HOH D .  ? HOH A 35  . ? 1_555 ? 
16 AC2 8  HOH D .  ? HOH A 42  . ? 1_555 ? 
17 AC2 8  HOH D .  ? HOH A 55  . ? 1_555 ? 
18 AC2 8  HOH D .  ? HOH A 59  . ? 1_555 ? 
19 AC2 8  HOH D .  ? HOH A 138 . ? 1_555 ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 "O3'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.381 1.419 -0.038 0.006 N 
2 1 N3    A DG 3 ? ? C4    A DG 3 ? ? 1.398 1.350 0.048  0.007 N 
3 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.359 1.419 -0.060 0.006 N 
4 1 C6    A DG 4 ? ? N1    A DG 4 ? ? 1.435 1.391 0.044  0.007 N 
5 1 "O3'" A DC 5 ? ? "C3'" A DC 5 ? ? 1.376 1.419 -0.043 0.006 N 
6 1 N3    A DG 9 ? ? C4    A DG 9 ? ? 1.395 1.350 0.045  0.007 N 
7 1 C2    A DG 9 ? ? N2    A DG 9 ? ? 1.273 1.341 -0.068 0.010 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DT 1  ? ? "C4'" A DT 1  ? ? "C3'" A DT 1  ? ? 100.51 104.50 -3.99  0.40 N 
2  1 "O4'" A DT 1  ? ? "C1'" A DT 1  ? ? N1    A DT 1  ? ? 103.61 108.00 -4.39  0.70 N 
3  1 C5    A DT 1  ? ? C4    A DT 1  ? ? O4    A DT 1  ? ? 120.58 124.90 -4.32  0.70 N 
4  1 C4    A DT 1  ? ? C5    A DT 1  ? ? C7    A DT 1  ? ? 122.80 119.00 3.80   0.60 N 
5  1 C4    A DG 4  ? ? C5    A DG 4  ? ? N7    A DG 4  ? ? 105.95 110.80 -4.85  0.40 N 
6  1 C5    A DG 4  ? ? N7    A DG 4  ? ? C8    A DG 4  ? ? 107.55 104.30 3.25   0.50 N 
7  1 C6    A DG 4  ? ? C5    A DG 4  ? ? N7    A DG 4  ? ? 136.01 130.40 5.61   0.60 N 
8  1 N1    A DG 4  ? ? C6    A DG 4  ? ? O6    A DG 4  ? ? 113.85 119.90 -6.05  0.60 N 
9  1 C5    A DG 4  ? ? C6    A DG 4  ? ? O6    A DG 4  ? ? 133.28 128.60 4.68   0.60 N 
10 1 "O5'" A DC 5  ? ? P     A DC 5  ? ? OP2   A DC 5  ? ? 100.03 105.70 -5.67  0.90 N 
11 1 "O4'" A DC 5  ? ? "C1'" A DC 5  ? ? "C2'" A DC 5  ? ? 109.91 106.80 3.11   0.50 N 
12 1 C4    A DC 5  ? ? C5    A DC 5  ? ? C6    A DC 5  ? ? 121.05 117.40 3.65   0.50 N 
13 1 "O4'" A DG 6  ? ? "C1'" A DG 6  ? ? N9    A DG 6  ? ? 110.36 108.30 2.06   0.30 N 
14 1 N1    A DG 6  ? ? C6    A DG 6  ? ? O6    A DG 6  ? ? 114.38 119.90 -5.52  0.60 N 
15 1 "O4'" A DC 7  ? ? "C1'" A DC 7  ? ? "C2'" A DC 7  ? ? 109.97 106.80 3.17   0.50 N 
16 1 C6    A DG 9  ? ? N1    A DG 9  ? ? C2    A DG 9  ? ? 120.26 125.10 -4.84  0.60 N 
17 1 C5    A DG 9  ? ? C6    A DG 9  ? ? N1    A DG 9  ? ? 117.43 111.50 5.93   0.50 N 
18 1 N1    A DG 9  ? ? C6    A DG 9  ? ? O6    A DG 9  ? ? 115.97 119.90 -3.93  0.60 N 
19 1 "O5'" A DA 10 ? ? "C5'" A DA 10 ? ? "C4'" A DA 10 ? ? 98.87  109.40 -10.53 0.80 N 
20 1 "C4'" A DA 10 ? ? "C3'" A DA 10 ? ? "C2'" A DA 10 ? ? 97.45  102.20 -4.75  0.70 N 
21 1 "C3'" A DA 10 ? ? "C2'" A DA 10 ? ? "C1'" A DA 10 ? ? 96.64  102.40 -5.76  0.80 N 
22 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.01 105.90 -5.89  0.80 N 
# 
_pdbx_struct_special_symmetry.id              1 
_pdbx_struct_special_symmetry.PDB_model_num   1 
_pdbx_struct_special_symmetry.auth_asym_id    A 
_pdbx_struct_special_symmetry.auth_comp_id    HOH 
_pdbx_struct_special_symmetry.auth_seq_id     134 
_pdbx_struct_special_symmetry.PDB_ins_code    ? 
_pdbx_struct_special_symmetry.label_asym_id   D 
_pdbx_struct_special_symmetry.label_comp_id   HOH 
_pdbx_struct_special_symmetry.label_seq_id    . 
# 
_pdbx_refine_tls.pdbx_refine_id   'X-RAY DIFFRACTION' 
_pdbx_refine_tls.id               1 
_pdbx_refine_tls.details          ? 
_pdbx_refine_tls.method           refined 
_pdbx_refine_tls.origin_x         10.9142 
_pdbx_refine_tls.origin_y         -9.1098 
_pdbx_refine_tls.origin_z         6.8128 
_pdbx_refine_tls.T[1][1]          0.0147 
_pdbx_refine_tls.T[2][2]          0.0402 
_pdbx_refine_tls.T[3][3]          0.0141 
_pdbx_refine_tls.T[1][2]          -0.0105 
_pdbx_refine_tls.T[1][3]          0.0004 
_pdbx_refine_tls.T[2][3]          -0.0058 
_pdbx_refine_tls.L[1][1]          1.1842 
_pdbx_refine_tls.L[2][2]          3.3631 
_pdbx_refine_tls.L[3][3]          1.9843 
_pdbx_refine_tls.L[1][2]          1.0165 
_pdbx_refine_tls.L[1][3]          -0.7409 
_pdbx_refine_tls.L[2][3]          -1.5239 
_pdbx_refine_tls.S[1][1]          0.0082 
_pdbx_refine_tls.S[1][2]          0.1169 
_pdbx_refine_tls.S[1][3]          0.0279 
_pdbx_refine_tls.S[2][1]          -0.0693 
_pdbx_refine_tls.S[2][2]          0.0821 
_pdbx_refine_tls.S[2][3]          -0.0184 
_pdbx_refine_tls.S[3][1]          0.0025 
_pdbx_refine_tls.S[3][2]          -0.0483 
_pdbx_refine_tls.S[3][3]          -0.0903 
# 
_pdbx_refine_tls_group.pdbx_refine_id      'X-RAY DIFFRACTION' 
_pdbx_refine_tls_group.id                  1 
_pdbx_refine_tls_group.refine_tls_id       1 
_pdbx_refine_tls_group.beg_auth_asym_id    A 
_pdbx_refine_tls_group.beg_auth_seq_id     1 
_pdbx_refine_tls_group.beg_label_asym_id   ? 
_pdbx_refine_tls_group.beg_label_seq_id    ? 
_pdbx_refine_tls_group.end_auth_asym_id    A 
_pdbx_refine_tls_group.end_auth_seq_id     10 
_pdbx_refine_tls_group.end_label_asym_id   ? 
_pdbx_refine_tls_group.end_label_seq_id    ? 
_pdbx_refine_tls_group.selection           ? 
_pdbx_refine_tls_group.selection_details   ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
BA  BA     BA N N 1   
DA  OP3    O  N N 2   
DA  P      P  N N 3   
DA  OP1    O  N N 4   
DA  OP2    O  N N 5   
DA  "O5'"  O  N N 6   
DA  "C5'"  C  N N 7   
DA  "C4'"  C  N R 8   
DA  "O4'"  O  N N 9   
DA  "C3'"  C  N S 10  
DA  "O3'"  O  N N 11  
DA  "C2'"  C  N N 12  
DA  "C1'"  C  N R 13  
DA  N9     N  Y N 14  
DA  C8     C  Y N 15  
DA  N7     N  Y N 16  
DA  C5     C  Y N 17  
DA  C6     C  Y N 18  
DA  N6     N  N N 19  
DA  N1     N  Y N 20  
DA  C2     C  Y N 21  
DA  N3     N  Y N 22  
DA  C4     C  Y N 23  
DA  HOP3   H  N N 24  
DA  HOP2   H  N N 25  
DA  "H5'"  H  N N 26  
DA  "H5''" H  N N 27  
DA  "H4'"  H  N N 28  
DA  "H3'"  H  N N 29  
DA  "HO3'" H  N N 30  
DA  "H2'"  H  N N 31  
DA  "H2''" H  N N 32  
DA  "H1'"  H  N N 33  
DA  H8     H  N N 34  
DA  H61    H  N N 35  
DA  H62    H  N N 36  
DA  H2     H  N N 37  
DC  OP3    O  N N 38  
DC  P      P  N N 39  
DC  OP1    O  N N 40  
DC  OP2    O  N N 41  
DC  "O5'"  O  N N 42  
DC  "C5'"  C  N N 43  
DC  "C4'"  C  N R 44  
DC  "O4'"  O  N N 45  
DC  "C3'"  C  N S 46  
DC  "O3'"  O  N N 47  
DC  "C2'"  C  N N 48  
DC  "C1'"  C  N R 49  
DC  N1     N  N N 50  
DC  C2     C  N N 51  
DC  O2     O  N N 52  
DC  N3     N  N N 53  
DC  C4     C  N N 54  
DC  N4     N  N N 55  
DC  C5     C  N N 56  
DC  C6     C  N N 57  
DC  HOP3   H  N N 58  
DC  HOP2   H  N N 59  
DC  "H5'"  H  N N 60  
DC  "H5''" H  N N 61  
DC  "H4'"  H  N N 62  
DC  "H3'"  H  N N 63  
DC  "HO3'" H  N N 64  
DC  "H2'"  H  N N 65  
DC  "H2''" H  N N 66  
DC  "H1'"  H  N N 67  
DC  H41    H  N N 68  
DC  H42    H  N N 69  
DC  H5     H  N N 70  
DC  H6     H  N N 71  
DG  OP3    O  N N 72  
DG  P      P  N N 73  
DG  OP1    O  N N 74  
DG  OP2    O  N N 75  
DG  "O5'"  O  N N 76  
DG  "C5'"  C  N N 77  
DG  "C4'"  C  N R 78  
DG  "O4'"  O  N N 79  
DG  "C3'"  C  N S 80  
DG  "O3'"  O  N N 81  
DG  "C2'"  C  N N 82  
DG  "C1'"  C  N R 83  
DG  N9     N  Y N 84  
DG  C8     C  Y N 85  
DG  N7     N  Y N 86  
DG  C5     C  Y N 87  
DG  C6     C  N N 88  
DG  O6     O  N N 89  
DG  N1     N  N N 90  
DG  C2     C  N N 91  
DG  N2     N  N N 92  
DG  N3     N  N N 93  
DG  C4     C  Y N 94  
DG  HOP3   H  N N 95  
DG  HOP2   H  N N 96  
DG  "H5'"  H  N N 97  
DG  "H5''" H  N N 98  
DG  "H4'"  H  N N 99  
DG  "H3'"  H  N N 100 
DG  "HO3'" H  N N 101 
DG  "H2'"  H  N N 102 
DG  "H2''" H  N N 103 
DG  "H1'"  H  N N 104 
DG  H8     H  N N 105 
DG  H1     H  N N 106 
DG  H21    H  N N 107 
DG  H22    H  N N 108 
DT  OP3    O  N N 109 
DT  P      P  N N 110 
DT  OP1    O  N N 111 
DT  OP2    O  N N 112 
DT  "O5'"  O  N N 113 
DT  "C5'"  C  N N 114 
DT  "C4'"  C  N R 115 
DT  "O4'"  O  N N 116 
DT  "C3'"  C  N S 117 
DT  "O3'"  O  N N 118 
DT  "C2'"  C  N N 119 
DT  "C1'"  C  N R 120 
DT  N1     N  N N 121 
DT  C2     C  N N 122 
DT  O2     O  N N 123 
DT  N3     N  N N 124 
DT  C4     C  N N 125 
DT  O4     O  N N 126 
DT  C5     C  N N 127 
DT  C7     C  N N 128 
DT  C6     C  N N 129 
DT  HOP3   H  N N 130 
DT  HOP2   H  N N 131 
DT  "H5'"  H  N N 132 
DT  "H5''" H  N N 133 
DT  "H4'"  H  N N 134 
DT  "H3'"  H  N N 135 
DT  "HO3'" H  N N 136 
DT  "H2'"  H  N N 137 
DT  "H2''" H  N N 138 
DT  "H1'"  H  N N 139 
DT  H3     H  N N 140 
DT  H71    H  N N 141 
DT  H72    H  N N 142 
DT  H73    H  N N 143 
DT  H6     H  N N 144 
HOH O      O  N N 145 
HOH H1     H  N N 146 
HOH H2     H  N N 147 
RKL RU     RU N N 148 
RKL C1     C  Y N 149 
RKL N1     N  Y N 150 
RKL C2     C  Y N 151 
RKL N2     N  Y N 152 
RKL C3     C  Y N 153 
RKL N3     N  Y N 154 
RKL C4     C  Y N 155 
RKL N4     N  Y N 156 
RKL C5     C  Y N 157 
RKL N5     N  Y N 158 
RKL C6     C  Y N 159 
RKL N6     N  Y N 160 
RKL C7     C  Y N 161 
RKL N7     N  Y N 162 
RKL C8     C  Y N 163 
RKL N8     N  Y N 164 
RKL C9     C  Y N 165 
RKL N9     N  Y N 166 
RKL C10    C  Y N 167 
RKL N10    N  Y N 168 
RKL C11    C  Y N 169 
RKL N11    N  Y N 170 
RKL C12    C  Y N 171 
RKL N12    N  Y N 172 
RKL C13    C  Y N 173 
RKL C14    C  Y N 174 
RKL C15    C  Y N 175 
RKL C16    C  Y N 176 
RKL C17    C  Y N 177 
RKL C18    C  Y N 178 
RKL C19    C  Y N 179 
RKL C20    C  Y N 180 
RKL C21    C  Y N 181 
RKL C22    C  Y N 182 
RKL C23    C  Y N 183 
RKL C24    C  Y N 184 
RKL C25    C  Y N 185 
RKL C26    C  Y N 186 
RKL C27    C  Y N 187 
RKL C28    C  Y N 188 
RKL C29    C  Y N 189 
RKL C30    C  Y N 190 
RKL C31    C  Y N 191 
RKL C32    C  Y N 192 
RKL C33    C  Y N 193 
RKL C34    C  Y N 194 
RKL C35    C  Y N 195 
RKL C36    C  Y N 196 
RKL C37    C  Y N 197 
RKL C38    C  Y N 198 
RKL H2     H  N N 199 
RKL H3     H  N N 200 
RKL H4     H  N N 201 
RKL H9     H  N N 202 
RKL H11    H  N N 203 
RKL H12    H  N N 204 
RKL H14    H  N N 205 
RKL H16    H  N N 206 
RKL H17    H  N N 207 
RKL H18    H  N N 208 
RKL H20    H  N N 209 
RKL H21    H  N N 210 
RKL H23    H  N N 211 
RKL H24    H  N N 212 
RKL H27    H  N N 213 
RKL H28    H  N N 214 
RKL H30    H  N N 215 
RKL H31    H  N N 216 
RKL H33    H  N N 217 
RKL H34    H  N N 218 
RKL H37    H  N N 219 
RKL H38    H  N N 220 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
RKL RU    N1     sing N N 152 
RKL RU    N2     sing N N 153 
RKL RU    N5     sing N N 154 
RKL RU    N8     sing N N 155 
RKL RU    N9     sing N N 156 
RKL RU    N12    sing N N 157 
RKL C1    N2     doub Y N 158 
RKL C1    C5     sing Y N 159 
RKL C1    C10    sing Y N 160 
RKL N1    C10    doub Y N 161 
RKL N1    C12    sing Y N 162 
RKL C2    N2     sing Y N 163 
RKL C2    C3     doub Y N 164 
RKL C2    H2     sing N N 165 
RKL C3    C4     sing Y N 166 
RKL C3    H3     sing N N 167 
RKL N3    C6     doub Y N 168 
RKL N3    C15    sing Y N 169 
RKL C4    C5     doub Y N 170 
RKL C4    H4     sing N N 171 
RKL N4    C7     doub Y N 172 
RKL N4    C13    sing Y N 173 
RKL C5    C6     sing Y N 174 
RKL N5    C19    doub Y N 175 
RKL N5    C20    sing Y N 176 
RKL C6    C7     sing Y N 177 
RKL N6    C21    sing Y N 178 
RKL N6    C22    doub Y N 179 
RKL C7    C8     sing Y N 180 
RKL N7    C25    doub Y N 181 
RKL N7    C27    sing Y N 182 
RKL C8    C9     doub Y N 183 
RKL C8    C10    sing Y N 184 
RKL N8    C26    doub Y N 185 
RKL N8    C28    sing Y N 186 
RKL C9    C11    sing Y N 187 
RKL C9    H9     sing N N 188 
RKL N9    C29    doub Y N 189 
RKL N9    C30    sing Y N 190 
RKL N10   C31    sing Y N 191 
RKL N10   C32    doub Y N 192 
RKL C11   C12    doub Y N 193 
RKL C11   H11    sing N N 194 
RKL N11   C35    doub Y N 195 
RKL N11   C37    sing Y N 196 
RKL C12   H12    sing N N 197 
RKL N12   C36    doub Y N 198 
RKL N12   C38    sing Y N 199 
RKL C13   C14    sing Y N 200 
RKL C13   C15    doub Y N 201 
RKL C14   C18    doub Y N 202 
RKL C14   H14    sing N N 203 
RKL C15   C16    sing Y N 204 
RKL C16   C17    doub Y N 205 
RKL C16   H16    sing N N 206 
RKL C17   C18    sing Y N 207 
RKL C17   H17    sing N N 208 
RKL C18   H18    sing N N 209 
RKL C19   C22    sing Y N 210 
RKL C19   C26    sing Y N 211 
RKL C20   C21    doub Y N 212 
RKL C20   H20    sing N N 213 
RKL C21   H21    sing N N 214 
RKL C22   C23    sing Y N 215 
RKL C23   C24    doub Y N 216 
RKL C23   H23    sing N N 217 
RKL C24   C25    sing Y N 218 
RKL C24   H24    sing N N 219 
RKL C25   C26    sing Y N 220 
RKL C27   C28    doub Y N 221 
RKL C27   H27    sing N N 222 
RKL C28   H28    sing N N 223 
RKL C29   C32    sing Y N 224 
RKL C29   C36    sing Y N 225 
RKL C30   C31    doub Y N 226 
RKL C30   H30    sing N N 227 
RKL C31   H31    sing N N 228 
RKL C32   C33    sing Y N 229 
RKL C33   C34    doub Y N 230 
RKL C33   H33    sing N N 231 
RKL C34   C35    sing Y N 232 
RKL C34   H34    sing N N 233 
RKL C35   C36    sing Y N 234 
RKL C37   C38    doub Y N 235 
RKL C37   H37    sing N N 236 
RKL C38   H38    sing N N 237 
# 
_ndb_struct_conf_na.entry_id   3QF8 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 2 1_555 A DG 9 8_555 0.045  0.074  0.372  -16.660 11.282 -0.539 1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 
1 A DG 3 1_555 A DC 8 8_555 -0.386 0.022  0.408  24.970  -2.117 -1.517 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 
1 A DG 4 1_555 A DC 7 8_555 -0.275 -0.080 -0.323 -10.492 -0.297 -1.509 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 
1 A DC 5 1_555 A DG 6 8_555 0.221  -0.064 0.116  -5.357  -7.924 -1.749 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1 
1 A DG 6 1_555 A DC 5 8_555 -0.221 -0.064 0.116  5.357   -7.924 -1.749 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1 
1 A DC 7 1_555 A DG 4 8_555 0.275  -0.080 -0.323 10.492  -0.297 -1.509 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 
1 A DC 8 1_555 A DG 3 8_555 0.386  0.022  0.408  -24.970 -2.117 -1.517 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 
1 A DG 9 1_555 A DC 2 8_555 -0.045 0.074  0.372  16.660  11.282 -0.539 8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 2 1_555 A DG 9 8_555 A DG 3 1_555 A DC 8 8_555 -0.510 1.618 2.438 1.038  3.260  20.039 3.435  1.811  2.635 9.281  -2.956 
20.326 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 
1 A DG 3 1_555 A DC 8 8_555 A DG 4 1_555 A DC 7 8_555 -0.252 0.797 5.277 0.644  53.291 15.546 -5.181 0.344  2.296 74.910 -0.905 
55.356 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 
1 A DG 4 1_555 A DC 7 8_555 A DC 5 1_555 A DG 6 8_555 -1.023 0.256 3.212 -5.842 -1.576 37.482 0.596  0.824  3.316 -2.433 9.019  
37.950 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 
1 A DC 5 1_555 A DG 6 8_555 A DG 6 1_555 A DC 5 8_555 0.000  0.895 3.297 0.000  17.608 29.208 -1.535 0.000  3.296 31.561 0.000  
34.006 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 
1 A DG 6 1_555 A DC 5 8_555 A DC 7 1_555 A DG 4 8_555 1.023  0.256 3.212 5.842  -1.576 37.482 0.596  -0.824 3.316 -2.433 -9.019 
37.950 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 
1 A DC 7 1_555 A DG 4 8_555 A DC 8 1_555 A DG 3 8_555 0.252  0.797 5.277 -0.644 53.291 15.546 -5.181 -0.344 2.296 74.910 0.905  
55.356 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 
1 A DC 8 1_555 A DG 3 8_555 A DG 9 1_555 A DC 2 8_555 0.510  1.618 2.438 -1.038 3.260  20.039 3.435  -1.811 2.635 9.281  2.956  
20.326 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? 
# 
_atom_sites.entry_id                    3QF8 
_atom_sites.fract_transf_matrix[1][1]   0.023675 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.023675 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.025394 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BA 
C  
N  
O  
P  
RU 
# 
loop_