HEADER LYASE 21-JAN-11 3QFE TITLE CRYSTAL STRUCTURES OF A PUTATIVE DIHYDRODIPICOLINATE SYNTHASE FAMILY TITLE 2 PROTEIN FROM COCCIDIOIDES IMMITIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DIHYDRODIPICOLINATE SYNTHASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COCCIDIOIDES IMMITIS; SOURCE 3 ORGANISM_TAXID: 246410; SOURCE 4 STRAIN: RS; SOURCE 5 GENE: CIMG_00151; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 COCCIDIOIDES, VALLEY FEVER, COCCIDIOIDOMYCOSIS, PATHOGENIC FUNGUS, KEYWDS 3 SOIL-BORN PATHOGEN, PUTATIVE UNCHARACTERIZED PROTEIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-SEP-23 3QFE 1 REMARK LINK REVDAT 1 02-FEB-11 3QFE 0 JRNL AUTH T.E.EDWARDS,A.S.GARDBERG,B.SANKARAN, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURES OF A PUTATIVE DIHYDRODIPICOLINATE JRNL TITL 2 SYNTHASE FAMILY PROTEIN FROM COCCIDIOIDES IMMITIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 38011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1902 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4393 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.34000 REMARK 3 B22 (A**2) : 2.34000 REMARK 3 B33 (A**2) : -3.51000 REMARK 3 B12 (A**2) : 1.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4512 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6168 ; 1.320 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 605 ; 5.972 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;38.195 ;23.397 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 639 ;14.700 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.685 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 736 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3420 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3041 ; 0.748 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4852 ; 1.400 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1471 ; 2.041 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 3.372 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 313 6 REMARK 3 1 B 1 B 313 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2130 ; 0.360 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2130 ; 2.860 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3277 -38.1394 -12.9132 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1028 REMARK 3 T33: 0.0432 T12: -0.0840 REMARK 3 T13: 0.0051 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.9869 L22: 0.8645 REMARK 3 L33: 2.7534 L12: -0.3350 REMARK 3 L13: 0.7382 L23: -0.2882 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0231 S13: 0.1443 REMARK 3 S21: -0.0404 S22: -0.0739 S23: -0.0824 REMARK 3 S31: -0.3357 S32: 0.2833 S33: 0.0716 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4806 -15.6720 -15.0522 REMARK 3 T TENSOR REMARK 3 T11: 0.0197 T22: 0.0268 REMARK 3 T33: 0.0354 T12: -0.0060 REMARK 3 T13: -0.0007 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.1175 L22: 1.6456 REMARK 3 L33: 1.8561 L12: -0.6958 REMARK 3 L13: -0.1347 L23: 0.1480 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: 0.0237 S13: -0.0085 REMARK 3 S21: -0.0271 S22: -0.1222 S23: 0.1165 REMARK 3 S31: -0.0900 S32: -0.0511 S33: 0.1039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38200 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 2V8Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COIMA.00447.A.A1 PW28367 AT 24.64 REMARK 280 MG/ML AGAINST CSHT SCREEN CONDITION B2, 0.2 M CACL2, 0.1 M NA REMARK 280 HEPES PH 7.5, 28% PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 247.64000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.82000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 185.73000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.91000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 309.55000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 247.64000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 123.82000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.91000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 185.73000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 309.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 317 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 PHE A 114 REMARK 465 GLY A 115 REMARK 465 LYS A 116 REMARK 465 GLY A 145 REMARK 465 VAL A 146 REMARK 465 CYS A 147 REMARK 465 ASN A 148 REMARK 465 LYS A 255 REMARK 465 SER A 256 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 PHE B 114 REMARK 465 GLY B 115 REMARK 465 LYS B 116 REMARK 465 ALA B 117 REMARK 465 GLY B 145 REMARK 465 VAL B 146 REMARK 465 CYS B 147 REMARK 465 ASN B 148 REMARK 465 GLY B 149 REMARK 465 CYS B 254 REMARK 465 LYS B 255 REMARK 465 SER B 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 THR A 118 OG1 CG2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ILE A 150 CG1 CG2 CD1 REMARK 470 MET A 156 CG SD CE REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 174 SG REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLN A 198 CG CD OE1 NE2 REMARK 470 ASP A 200 CG OD1 OD2 REMARK 470 PHE A 201 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 203 CG1 CG2 CD1 REMARK 470 LEU A 206 CG CD1 CD2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 VAL A 237 CG1 CG2 REMARK 470 MET A 241 CG SD CE REMARK 470 CYS A 254 SG REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 CYS B 174 SG REMARK 470 GLN B 198 CG CD OE1 NE2 REMARK 470 ASP B 200 CG OD1 OD2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 ASP B 238 CG OD1 OD2 REMARK 470 MET B 241 CG SD CE REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 ARG B 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 GLN B 297 CG CD OE1 NE2 REMARK 470 LYS B 301 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 213 CB CYS B 213 SG -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 203 -73.12 -45.34 REMARK 500 SER A 252 -70.97 -18.77 REMARK 500 PRO A 253 105.99 -50.77 REMARK 500 PHE A 268 -83.26 -111.81 REMARK 500 ALA B 85 -168.19 -162.35 REMARK 500 CYS B 174 74.96 -101.59 REMARK 500 PHE B 268 -86.61 -112.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 212 CYS A 213 -149.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 315 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 311 O REMARK 620 2 SER A 314 OXT 75.9 REMARK 620 3 HOH A 353 O 74.2 149.2 REMARK 620 4 HOH A 354 O 90.6 87.6 99.8 REMARK 620 5 HOH A 355 O 147.9 72.0 137.1 90.4 REMARK 620 6 HOH A 356 O 138.2 145.3 65.4 86.2 73.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 315 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 39 O REMARK 620 2 HOH B 368 O 89.5 REMARK 620 3 HOH B 369 O 77.7 101.4 REMARK 620 4 HOH B 370 O 91.2 174.8 83.8 REMARK 620 5 HOH B 372 O 79.1 89.0 154.5 86.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 320 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: COIMA.00447.A RELATED DB: TARGETDB DBREF 3QFE A -3 314 PDB 3QFE 3QFE -3 314 DBREF 3QFE B -3 314 PDB 3QFE 3QFE -3 314 SEQRES 1 A 318 GLY PRO GLY SER MET VAL PRO ARG VAL PRO GLN PRO GLY SEQRES 2 A 318 ILE TRP CYS PRO ALA VAL THR PHE PHE ASP SER LYS THR SEQRES 3 A 318 ASP THR LEU ASP LEU ALA SER GLN GLU ARG TYR TYR ALA SEQRES 4 A 318 TYR LEU ALA ARG SER GLY LEU THR GLY LEU VAL ILE LEU SEQRES 5 A 318 GLY THR ASN ALA GLU ALA PHE LEU LEU THR ARG GLU GLU SEQRES 6 A 318 ARG ALA GLN LEU ILE ALA THR ALA ARG LYS ALA VAL GLY SEQRES 7 A 318 PRO ASP PHE PRO ILE MET ALA GLY VAL GLY ALA HIS SER SEQRES 8 A 318 THR ARG GLN VAL LEU GLU HIS ILE ASN ASP ALA SER VAL SEQRES 9 A 318 ALA GLY ALA ASN TYR VAL LEU VAL LEU PRO PRO ALA TYR SEQRES 10 A 318 PHE GLY LYS ALA THR THR PRO PRO VAL ILE LYS SER PHE SEQRES 11 A 318 PHE ASP ASP VAL SER CYS GLN SER PRO LEU PRO VAL VAL SEQRES 12 A 318 ILE TYR ASN PHE PRO GLY VAL CYS ASN GLY ILE ASP LEU SEQRES 13 A 318 ASP SER ASP MET ILE THR THR ILE ALA ARG LYS ASN PRO SEQRES 14 A 318 ASN VAL VAL GLY VAL LYS LEU THR CYS ALA SER VAL GLY SEQRES 15 A 318 LYS ILE THR ARG LEU ALA ALA THR LEU PRO PRO ALA ALA SEQRES 16 A 318 PHE SER VAL PHE GLY GLY GLN SER ASP PHE LEU ILE GLY SEQRES 17 A 318 GLY LEU SER VAL GLY SER ALA GLY CYS ILE ALA ALA PHE SEQRES 18 A 318 ALA ASN VAL PHE PRO LYS THR VAL SER LYS ILE TYR GLU SEQRES 19 A 318 LEU TYR LYS ALA GLY LYS VAL ASP GLN ALA MET GLU LEU SEQRES 20 A 318 HIS ARG LYS ALA ALA LEU ALA GLU SER PRO CYS LYS SER SEQRES 21 A 318 GLY ILE ALA THR THR LYS TYR ALA ALA ALA ILE PHE SER SEQRES 22 A 318 ALA LYS ALA ALA GLY ILE GLU ASP ALA GLU GLU LYS LEU SEQRES 23 A 318 ARG PRO ARG LYS PRO TYR ASP PRO PRO SER GLU ALA ALA SEQRES 24 A 318 LYS GLN GLU VAL ARG LYS VAL MET ALA GLU VAL ALA ALA SEQRES 25 A 318 ILE GLU ALA GLY LEU SER SEQRES 1 B 318 GLY PRO GLY SER MET VAL PRO ARG VAL PRO GLN PRO GLY SEQRES 2 B 318 ILE TRP CYS PRO ALA VAL THR PHE PHE ASP SER LYS THR SEQRES 3 B 318 ASP THR LEU ASP LEU ALA SER GLN GLU ARG TYR TYR ALA SEQRES 4 B 318 TYR LEU ALA ARG SER GLY LEU THR GLY LEU VAL ILE LEU SEQRES 5 B 318 GLY THR ASN ALA GLU ALA PHE LEU LEU THR ARG GLU GLU SEQRES 6 B 318 ARG ALA GLN LEU ILE ALA THR ALA ARG LYS ALA VAL GLY SEQRES 7 B 318 PRO ASP PHE PRO ILE MET ALA GLY VAL GLY ALA HIS SER SEQRES 8 B 318 THR ARG GLN VAL LEU GLU HIS ILE ASN ASP ALA SER VAL SEQRES 9 B 318 ALA GLY ALA ASN TYR VAL LEU VAL LEU PRO PRO ALA TYR SEQRES 10 B 318 PHE GLY LYS ALA THR THR PRO PRO VAL ILE LYS SER PHE SEQRES 11 B 318 PHE ASP ASP VAL SER CYS GLN SER PRO LEU PRO VAL VAL SEQRES 12 B 318 ILE TYR ASN PHE PRO GLY VAL CYS ASN GLY ILE ASP LEU SEQRES 13 B 318 ASP SER ASP MET ILE THR THR ILE ALA ARG LYS ASN PRO SEQRES 14 B 318 ASN VAL VAL GLY VAL LYS LEU THR CYS ALA SER VAL GLY SEQRES 15 B 318 LYS ILE THR ARG LEU ALA ALA THR LEU PRO PRO ALA ALA SEQRES 16 B 318 PHE SER VAL PHE GLY GLY GLN SER ASP PHE LEU ILE GLY SEQRES 17 B 318 GLY LEU SER VAL GLY SER ALA GLY CYS ILE ALA ALA PHE SEQRES 18 B 318 ALA ASN VAL PHE PRO LYS THR VAL SER LYS ILE TYR GLU SEQRES 19 B 318 LEU TYR LYS ALA GLY LYS VAL ASP GLN ALA MET GLU LEU SEQRES 20 B 318 HIS ARG LYS ALA ALA LEU ALA GLU SER PRO CYS LYS SER SEQRES 21 B 318 GLY ILE ALA THR THR LYS TYR ALA ALA ALA ILE PHE SER SEQRES 22 B 318 ALA LYS ALA ALA GLY ILE GLU ASP ALA GLU GLU LYS LEU SEQRES 23 B 318 ARG PRO ARG LYS PRO TYR ASP PRO PRO SER GLU ALA ALA SEQRES 24 B 318 LYS GLN GLU VAL ARG LYS VAL MET ALA GLU VAL ALA ALA SEQRES 25 B 318 ILE GLU ALA GLY LEU SER HET CA A 315 1 HET CL A 316 1 HET CL A 317 1 HET CL A 318 1 HET CA B 315 1 HET CL B 316 1 HET CL B 317 1 HET CL B 318 1 HET EDO B 319 4 HET EDO B 320 4 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 2(CA 2+) FORMUL 4 CL 6(CL 1-) FORMUL 11 EDO 2(C2 H6 O2) FORMUL 13 HOH *187(H2 O) HELIX 1 1 ASP A 26 ARG A 39 1 14 HELIX 2 2 GLY A 49 LEU A 57 5 9 HELIX 3 3 THR A 58 GLY A 74 1 17 HELIX 4 4 SER A 87 GLY A 102 1 16 HELIX 5 5 THR A 119 SER A 134 1 16 HELIX 6 6 ASP A 153 ASN A 164 1 12 HELIX 7 7 SER A 176 LEU A 187 1 12 HELIX 8 8 PRO A 188 PHE A 192 5 5 HELIX 9 9 GLN A 198 ASP A 200 5 3 HELIX 10 10 PHE A 201 VAL A 208 1 8 HELIX 11 11 ALA A 216 VAL A 220 5 5 HELIX 12 12 PHE A 221 ALA A 234 1 14 HELIX 13 13 LYS A 236 GLU A 251 1 16 HELIX 14 14 GLY A 257 PHE A 268 1 12 HELIX 15 15 PHE A 268 ALA A 273 1 6 HELIX 16 16 ASP A 277 LEU A 282 1 6 HELIX 17 17 SER A 292 SER A 314 1 23 HELIX 18 18 ASP B 26 ARG B 39 1 14 HELIX 19 19 GLY B 49 LEU B 57 5 9 HELIX 20 20 THR B 58 GLY B 74 1 17 HELIX 21 21 SER B 87 GLY B 102 1 16 HELIX 22 22 THR B 119 SER B 134 1 16 HELIX 23 23 ASP B 153 ARG B 162 1 10 HELIX 24 24 SER B 176 LEU B 187 1 12 HELIX 25 25 GLN B 198 ASP B 200 5 3 HELIX 26 26 PHE B 201 VAL B 208 1 8 HELIX 27 27 ALA B 216 VAL B 220 5 5 HELIX 28 28 PHE B 221 GLY B 235 1 15 HELIX 29 29 LYS B 236 GLU B 251 1 16 HELIX 30 30 GLY B 257 PHE B 268 1 12 HELIX 31 31 PHE B 268 ALA B 273 1 6 HELIX 32 32 ASP B 277 LEU B 282 1 6 HELIX 33 33 SER B 292 GLY B 312 1 21 SHEET 1 A 9 GLY A 9 PRO A 13 0 SHEET 2 A 9 GLY A 44 ILE A 47 1 O VAL A 46 N CYS A 12 SHEET 3 A 9 ILE A 79 GLY A 82 1 O MET A 80 N LEU A 45 SHEET 4 A 9 TYR A 105 VAL A 108 1 O LEU A 107 N ALA A 81 SHEET 5 A 9 VAL A 138 ASN A 142 1 O VAL A 139 N VAL A 108 SHEET 6 A 9 VAL A 167 LEU A 172 1 O LYS A 171 N ILE A 140 SHEET 7 A 9 SER A 193 GLY A 196 1 O PHE A 195 N LEU A 172 SHEET 8 A 9 GLY A 212 ILE A 214 1 O GLY A 212 N GLY A 196 SHEET 9 A 9 GLY A 9 PRO A 13 1 N TRP A 11 O CYS A 213 SHEET 1 B 2 PHE A 18 ASP A 19 0 SHEET 2 B 2 THR A 24 LEU A 25 -1 O THR A 24 N ASP A 19 SHEET 1 C 9 GLY B 9 PRO B 13 0 SHEET 2 C 9 GLY B 44 ILE B 47 1 O VAL B 46 N CYS B 12 SHEET 3 C 9 ILE B 79 GLY B 82 1 O MET B 80 N LEU B 45 SHEET 4 C 9 TYR B 105 VAL B 108 1 O LEU B 107 N ALA B 81 SHEET 5 C 9 VAL B 138 ASN B 142 1 O VAL B 139 N VAL B 106 SHEET 6 C 9 VAL B 167 LEU B 172 1 O LYS B 171 N ILE B 140 SHEET 7 C 9 SER B 193 GLY B 196 1 O PHE B 195 N LEU B 172 SHEET 8 C 9 GLY B 212 ILE B 214 1 O GLY B 212 N GLY B 196 SHEET 9 C 9 GLY B 9 PRO B 13 1 N TRP B 11 O CYS B 213 SHEET 1 D 2 PHE B 18 ASP B 19 0 SHEET 2 D 2 THR B 24 LEU B 25 -1 O THR B 24 N ASP B 19 LINK O ALA A 311 CA CA A 315 1555 1555 2.43 LINK OXT SER A 314 CA CA A 315 1555 1555 2.24 LINK CA CA A 315 O HOH A 353 1555 1555 2.37 LINK CA CA A 315 O HOH A 354 1555 1555 2.40 LINK CA CA A 315 O HOH A 355 1555 1555 2.48 LINK CA CA A 315 O HOH A 356 1555 1555 2.56 LINK O ARG B 39 CA CA B 315 1555 1555 2.32 LINK CA CA B 315 O HOH B 368 1555 1555 2.51 LINK CA CA B 315 O HOH B 369 1555 1555 2.62 LINK CA CA B 315 O HOH B 370 1555 1555 2.38 LINK CA CA B 315 O HOH B 372 1555 1555 2.88 CISPEP 1 LYS A 286 PRO A 287 0 2.08 CISPEP 2 LYS B 286 PRO B 287 0 7.17 SITE 1 AC1 7 ALA A 311 SER A 314 HOH A 353 HOH A 354 SITE 2 AC1 7 HOH A 355 HOH A 356 CYS B 132 SITE 1 AC2 5 ARG B 39 HOH B 368 HOH B 369 HOH B 370 SITE 2 AC2 5 HOH B 372 SITE 1 AC3 1 LYS B 223 SITE 1 AC4 2 LYS B 227 SER B 314 SITE 1 AC5 1 SER A 314 SITE 1 AC6 1 GLU A 31 SITE 1 AC7 5 LYS B 21 GLN B 133 LYS B 286 HOH B 331 SITE 2 AC7 5 HOH B 383 SITE 1 AC8 8 LEU B 48 ALA B 54 PHE B 55 ARG B 62 SITE 2 AC8 8 GLY B 82 VAL B 83 GLY B 84 TYR B 141 CRYST1 89.760 89.760 371.460 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011141 0.006432 0.000000 0.00000 SCALE2 0.000000 0.012864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002692 0.00000