HEADER HYDROLASE 22-JAN-11 3QFO TITLE CRYSTAL STRUCTURE OF STREPTOCOCCAL ASYMMETRIC AP4A HYDROLASE AND TITLE 2 PHOSPHODIESTERASE SPR1479/SAPH IM COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-262; COMPND 5 SYNONYM: SAPH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 171101; SOURCE 4 STRAIN: R6; SOURCE 5 GENE: SPR1479; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28 KEYWDS SANDWICH FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.JIANG,J.W.ZHANG,W.L.YU,W.CHENG,C.C.ZHANG,C.Z.ZHOU,Y.CHEN REVDAT 2 01-NOV-23 3QFO 1 REMARK SEQADV LINK REVDAT 1 24-AUG-11 3QFO 0 JRNL AUTH Y.L.JIANG,J.W.ZHANG,W.L.YU,W.CHENG,C.C.ZHANG,C.FROLET, JRNL AUTH 2 A.-M.DI-GUILMI,T.VERNET,C.Z.ZHOU,Y.CHEN JRNL TITL STRUCTURAL AND ENZYMATIC CHARACTERIZATION OF A STREPTOCOCCAL JRNL TITL 2 ATP/DIADENOSINE POLYPHOSPHATE AND PHOSPHODIESTER HYDROLASE JRNL TITL 3 SPR1479/SAPH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 31503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2198 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4066 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.94000 REMARK 3 B22 (A**2) : -1.96000 REMARK 3 B33 (A**2) : -1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4206 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5714 ; 1.235 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 5.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;35.906 ;23.761 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;13.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.009 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3216 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2480 ; 0.604 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3998 ; 1.186 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1726 ; 1.874 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1716 ; 3.117 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28400 REMARK 200 R SYM FOR SHELL (I) : 0.28400 REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% ISO-PROPANOL, 0.1M HEPES, PH 7.5, REMARK 280 0.2M NH4AC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.82700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.82700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 253 REMARK 465 THR A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 GLN A 257 REMARK 465 GLU A 258 REMARK 465 PHE A 259 REMARK 465 LEU A 260 REMARK 465 ARG A 261 REMARK 465 GLU A 262 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 253 REMARK 465 THR B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 GLN B 257 REMARK 465 GLU B 258 REMARK 465 PHE B 259 REMARK 465 LEU B 260 REMARK 465 ARG B 261 REMARK 465 GLU B 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 67.73 60.06 REMARK 500 MET A 42 142.23 81.42 REMARK 500 ARG A 47 -101.00 -130.76 REMARK 500 HIS A 129 -117.28 -132.65 REMARK 500 HIS A 154 70.47 44.65 REMARK 500 HIS A 164 -39.78 73.97 REMARK 500 GLN A 187 57.45 -147.33 REMARK 500 ASP B 39 64.31 60.65 REMARK 500 MET B 42 139.83 76.20 REMARK 500 ARG B 47 -97.69 -126.97 REMARK 500 HIS B 129 -112.36 -126.45 REMARK 500 HIS B 164 -38.20 70.79 REMARK 500 ASP B 209 -165.40 -129.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 264 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 HIS A 13 NE2 108.4 REMARK 620 3 ASP A 39 OD2 84.7 99.8 REMARK 620 4 HIS A 166 NE2 90.0 88.4 171.3 REMARK 620 5 AMP A 263 O2P 161.3 90.3 92.8 90.0 REMARK 620 6 HOH A 266 O 92.6 158.0 75.1 98.3 68.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 265 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 39 OD2 REMARK 620 2 ASN A 66 OD1 90.9 REMARK 620 3 HIS A 128 NE2 87.6 87.2 REMARK 620 4 HIS A 164 ND1 169.0 100.0 91.7 REMARK 620 5 AMP A 263 O1P 97.9 90.5 174.1 83.3 REMARK 620 6 HOH A 266 O 81.5 156.8 114.2 88.8 69.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 264 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD2 REMARK 620 2 HIS B 13 NE2 109.6 REMARK 620 3 ASP B 39 OD2 89.5 99.1 REMARK 620 4 HIS B 166 NE2 85.0 91.5 169.2 REMARK 620 5 AMP B 263 O2P 159.8 89.8 93.0 89.0 REMARK 620 6 HOH B 267 O 86.8 162.7 74.7 95.6 74.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 265 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 39 OD2 REMARK 620 2 ASN B 66 OD1 96.7 REMARK 620 3 HIS B 128 NE2 90.7 92.2 REMARK 620 4 HIS B 164 ND1 165.8 97.1 92.3 REMARK 620 5 AMP B 263 O1P 93.8 86.8 175.5 83.5 REMARK 620 6 HOH B 267 O 73.4 156.6 108.7 92.4 73.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QFM RELATED DB: PDB REMARK 900 RELATED ID: 3QFN RELATED DB: PDB DBREF 3QFO A 1 262 UNP Q8DNX4 Q8DNX4_STRR6 1 262 DBREF 3QFO B 1 262 UNP Q8DNX4 Q8DNX4_STRR6 1 262 SEQADV 3QFO MET A -7 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO GLY A -6 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS A -5 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS A -4 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS A -3 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS A -2 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS A -1 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS A 0 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO MET B -7 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO GLY B -6 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS B -5 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS B -4 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS B -3 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS B -2 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS B -1 UNP Q8DNX4 EXPRESSION TAG SEQADV 3QFO HIS B 0 UNP Q8DNX4 EXPRESSION TAG SEQRES 1 A 270 MET GLY HIS HIS HIS HIS HIS HIS MET ASP MET THR LYS SEQRES 2 A 270 ILE ALA LEU LEU SER ASP ILE HIS GLY ASN THR THR ALA SEQRES 3 A 270 LEU GLU ALA VAL LEU ALA ASP ALA ARG GLN LEU GLY VAL SEQRES 4 A 270 ASP GLU TYR TRP LEU LEU GLY ASP ILE LEU MET PRO GLY SEQRES 5 A 270 THR GLY ARG ARG ARG ILE LEU ASP LEU LEU ASP GLN LEU SEQRES 6 A 270 PRO ILE THR ALA ARG VAL LEU GLY ASN TRP GLU ASP SER SEQRES 7 A 270 LEU TRP HIS GLY VAL ARG LYS GLU LEU ASP SER THR ARG SEQRES 8 A 270 PRO SER GLN ARG TYR LEU LEU ARG GLN CYS GLN TYR VAL SEQRES 9 A 270 LEU GLU GLU ILE SER LEU GLU GLU ILE GLU VAL LEU HIS SEQRES 10 A 270 ASN GLN PRO LEU GLN ILE HIS ARG GLN PHE GLY ASP LEU SEQRES 11 A 270 THR VAL GLY ILE SER HIS HIS LEU PRO ASP LYS ASN TRP SEQRES 12 A 270 GLY ARG GLU LEU ILE HIS THR GLY LYS GLN GLU GLU PHE SEQRES 13 A 270 ASP ARG LEU VAL THR HIS PRO PRO CYS ASP ILE ALA VAL SEQRES 14 A 270 TYR GLY HIS ILE HIS GLN GLN LEU LEU ARG TYR GLY THR SEQRES 15 A 270 GLY GLY GLN LEU ILE VAL ASN PRO GLY SER ILE GLY GLN SEQRES 16 A 270 PRO PHE PHE LEU ASP ALA GLN LEU ARG LYS ASP LEU ARG SEQRES 17 A 270 ALA GLN TYR MET ILE LEU GLU PHE ASP ASP LYS GLY LEU SEQRES 18 A 270 VAL ASP MET ASP PHE ARG ARG VAL ASP TYR ASP VAL ALA SEQRES 19 A 270 ALA GLU LEU GLN LEU ALA LYS ASP LEU ARG LEU PRO TYR SEQRES 20 A 270 PHE GLU VAL TYR TYR GLU SER LEU VAL ASN GLY ILE HIS SEQRES 21 A 270 HIS THR HIS HIS GLN GLU PHE LEU ARG GLU SEQRES 1 B 270 MET GLY HIS HIS HIS HIS HIS HIS MET ASP MET THR LYS SEQRES 2 B 270 ILE ALA LEU LEU SER ASP ILE HIS GLY ASN THR THR ALA SEQRES 3 B 270 LEU GLU ALA VAL LEU ALA ASP ALA ARG GLN LEU GLY VAL SEQRES 4 B 270 ASP GLU TYR TRP LEU LEU GLY ASP ILE LEU MET PRO GLY SEQRES 5 B 270 THR GLY ARG ARG ARG ILE LEU ASP LEU LEU ASP GLN LEU SEQRES 6 B 270 PRO ILE THR ALA ARG VAL LEU GLY ASN TRP GLU ASP SER SEQRES 7 B 270 LEU TRP HIS GLY VAL ARG LYS GLU LEU ASP SER THR ARG SEQRES 8 B 270 PRO SER GLN ARG TYR LEU LEU ARG GLN CYS GLN TYR VAL SEQRES 9 B 270 LEU GLU GLU ILE SER LEU GLU GLU ILE GLU VAL LEU HIS SEQRES 10 B 270 ASN GLN PRO LEU GLN ILE HIS ARG GLN PHE GLY ASP LEU SEQRES 11 B 270 THR VAL GLY ILE SER HIS HIS LEU PRO ASP LYS ASN TRP SEQRES 12 B 270 GLY ARG GLU LEU ILE HIS THR GLY LYS GLN GLU GLU PHE SEQRES 13 B 270 ASP ARG LEU VAL THR HIS PRO PRO CYS ASP ILE ALA VAL SEQRES 14 B 270 TYR GLY HIS ILE HIS GLN GLN LEU LEU ARG TYR GLY THR SEQRES 15 B 270 GLY GLY GLN LEU ILE VAL ASN PRO GLY SER ILE GLY GLN SEQRES 16 B 270 PRO PHE PHE LEU ASP ALA GLN LEU ARG LYS ASP LEU ARG SEQRES 17 B 270 ALA GLN TYR MET ILE LEU GLU PHE ASP ASP LYS GLY LEU SEQRES 18 B 270 VAL ASP MET ASP PHE ARG ARG VAL ASP TYR ASP VAL ALA SEQRES 19 B 270 ALA GLU LEU GLN LEU ALA LYS ASP LEU ARG LEU PRO TYR SEQRES 20 B 270 PHE GLU VAL TYR TYR GLU SER LEU VAL ASN GLY ILE HIS SEQRES 21 B 270 HIS THR HIS HIS GLN GLU PHE LEU ARG GLU HET AMP A 263 23 HET FE A 264 1 HET MN A 265 1 HET AMP B 263 23 HET FE B 264 1 HET MN B 265 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM FE FE (III) ION HETNAM MN MANGANESE (II) ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 FE 2(FE 3+) FORMUL 5 MN 2(MN 2+) FORMUL 9 HOH *275(H2 O) HELIX 1 1 ASN A 15 LEU A 29 1 15 HELIX 2 2 ARG A 47 GLN A 56 1 10 HELIX 3 3 GLY A 65 ARG A 76 1 12 HELIX 4 4 ARG A 83 GLU A 98 1 16 HELIX 5 5 SER A 101 ASN A 110 1 10 HELIX 6 6 LYS A 144 ARG A 150 1 7 HELIX 7 7 GLN A 194 ASP A 198 5 5 HELIX 8 8 ASP A 224 LEU A 235 1 12 HELIX 9 9 TYR A 239 ASN A 249 1 11 HELIX 10 10 ASN B 15 LEU B 29 1 15 HELIX 11 11 ARG B 47 GLN B 56 1 10 HELIX 12 12 GLY B 65 ARG B 76 1 12 HELIX 13 13 ARG B 83 GLU B 98 1 16 HELIX 14 14 SER B 101 ASN B 110 1 10 HELIX 15 15 LYS B 144 ARG B 150 1 7 HELIX 16 16 GLN B 194 ASP B 198 5 5 HELIX 17 17 ASP B 224 LEU B 235 1 12 HELIX 18 18 TYR B 239 ASN B 249 1 11 SHEET 1 A10 ILE A 59 ARG A 62 0 SHEET 2 A10 GLU A 33 LEU A 36 1 N LEU A 36 O ALA A 61 SHEET 3 A10 THR A 4 LEU A 9 1 N LEU A 9 O TRP A 35 SHEET 4 A10 ALA A 201 ASP A 209 -1 O LEU A 206 N ILE A 6 SHEET 5 A10 GLY A 212 VAL A 221 -1 O GLY A 212 N ASP A 209 SHEET 6 A10 GLY B 212 VAL B 221 -1 O MET B 216 N PHE A 218 SHEET 7 A10 ALA B 201 ASP B 209 -1 N ASP B 209 O GLY B 212 SHEET 8 A10 THR B 4 LEU B 9 -1 N ILE B 6 O LEU B 206 SHEET 9 A10 GLU B 33 LEU B 36 1 O TRP B 35 N LEU B 9 SHEET 10 A10 ILE B 59 ARG B 62 1 O ALA B 61 N LEU B 36 SHEET 1 B 5 GLN A 114 PHE A 119 0 SHEET 2 B 5 LEU A 122 SER A 127 -1 O VAL A 124 N ARG A 117 SHEET 3 B 5 ILE A 159 VAL A 161 1 O VAL A 161 N GLY A 125 SHEET 4 B 5 LEU A 178 PRO A 182 1 O LEU A 178 N ALA A 160 SHEET 5 B 5 GLN A 168 TYR A 172 -1 N ARG A 171 O ILE A 179 SHEET 1 C 5 GLN B 114 PHE B 119 0 SHEET 2 C 5 LEU B 122 SER B 127 -1 O VAL B 124 N ARG B 117 SHEET 3 C 5 ILE B 159 VAL B 161 1 O ILE B 159 N GLY B 125 SHEET 4 C 5 LEU B 178 PRO B 182 1 O LEU B 178 N ALA B 160 SHEET 5 C 5 GLN B 168 TYR B 172 -1 N ARG B 171 O ILE B 179 LINK OD2 ASP A 11 FE FE A 264 1555 1555 2.11 LINK NE2 HIS A 13 FE FE A 264 1555 1555 2.21 LINK OD2 ASP A 39 FE FE A 264 1555 1555 2.37 LINK OD2 ASP A 39 MN MN A 265 1555 1555 2.19 LINK OD1 ASN A 66 MN MN A 265 1555 1555 2.19 LINK NE2 HIS A 128 MN MN A 265 1555 1555 2.15 LINK ND1 HIS A 164 MN MN A 265 1555 1555 2.27 LINK NE2 HIS A 166 FE FE A 264 1555 1555 2.22 LINK O2P AMP A 263 FE FE A 264 1555 1555 2.12 LINK O1P AMP A 263 MN MN A 265 1555 1555 2.07 LINK FE FE A 264 O HOH A 266 1555 1555 2.09 LINK MN MN A 265 O HOH A 266 1555 1555 1.98 LINK OD2 ASP B 11 FE FE B 264 1555 1555 2.09 LINK NE2 HIS B 13 FE FE B 264 1555 1555 2.23 LINK OD2 ASP B 39 FE FE B 264 1555 1555 2.29 LINK OD2 ASP B 39 MN MN B 265 1555 1555 2.24 LINK OD1 ASN B 66 MN MN B 265 1555 1555 2.11 LINK NE2 HIS B 128 MN MN B 265 1555 1555 2.12 LINK ND1 HIS B 164 MN MN B 265 1555 1555 2.26 LINK NE2 HIS B 166 FE FE B 264 1555 1555 2.28 LINK O2P AMP B 263 FE FE B 264 1555 1555 2.20 LINK O1P AMP B 263 MN MN B 265 1555 1555 1.96 LINK FE FE B 264 O HOH B 267 1555 1555 1.92 LINK MN MN B 265 O HOH B 267 1555 1555 2.04 CISPEP 1 MET A 42 PRO A 43 0 1.46 CISPEP 2 HIS A 154 PRO A 155 0 -2.53 CISPEP 3 MET B 42 PRO B 43 0 2.43 CISPEP 4 HIS B 154 PRO B 155 0 -1.37 SITE 1 AC1 17 HIS A 13 ASP A 39 ASN A 66 TRP A 67 SITE 2 AC1 17 ARG A 137 ILE A 140 HIS A 141 HIS A 164 SITE 3 AC1 17 ILE A 165 HIS A 166 PHE A 189 HIS A 252 SITE 4 AC1 17 FE A 264 MN A 265 HOH A 266 HOH A 272 SITE 5 AC1 17 HOH A 308 SITE 1 AC2 7 ASP A 11 HIS A 13 ASP A 39 HIS A 166 SITE 2 AC2 7 AMP A 263 MN A 265 HOH A 266 SITE 1 AC3 7 ASP A 39 ASN A 66 HIS A 128 HIS A 164 SITE 2 AC3 7 AMP A 263 FE A 264 HOH A 266 SITE 1 AC4 16 HIS B 13 ASP B 39 ASN B 66 TRP B 67 SITE 2 AC4 16 ARG B 137 ILE B 140 HIS B 141 HIS B 164 SITE 3 AC4 16 ILE B 165 HIS B 166 PHE B 189 HIS B 252 SITE 4 AC4 16 FE B 264 MN B 265 HOH B 267 HOH B 346 SITE 1 AC5 7 ASP B 11 HIS B 13 ASP B 39 HIS B 166 SITE 2 AC5 7 AMP B 263 MN B 265 HOH B 267 SITE 1 AC6 7 ASP B 39 ASN B 66 HIS B 128 HIS B 164 SITE 2 AC6 7 AMP B 263 FE B 264 HOH B 267 CRYST1 57.654 74.940 149.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006706 0.00000