HEADER IMMUNE SYSTEM 24-JAN-11 3QG7 TITLE STRUCTURAL BASIS FOR LIGAND RECOGNITION AND DISCRIMINATION OF A QUORUM TITLE 2 QUENCHING ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP4-24H11 ANTIBODY HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AP4-24H11 ANTIBODY LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA KEYWDS IMMUNOGLOBULIN FOLD, ANTIGEN RECOGNITION, AIP4, SECRETED, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.K.KIRCHDOERFER,G.F.KAUFMANN,J.D.JANDA,I.A.WILSON REVDAT 3 13-SEP-23 3QG7 1 REMARK REVDAT 2 25-MAY-11 3QG7 1 JRNL REVDAT 1 23-MAR-11 3QG7 0 JRNL AUTH R.N.KIRCHDOERFER,A.L.GARNER,C.E.FLACK,J.M.MEE,A.R.HORSWILL, JRNL AUTH 2 K.D.JANDA,G.F.KAUFMANN,I.A.WILSON JRNL TITL STRUCTURAL BASIS FOR LIGAND RECOGNITION AND DISCRIMINATION JRNL TITL 2 OF A QUORUM-QUENCHING ANTIBODY. JRNL REF J.BIOL.CHEM. V. 286 17351 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21454495 JRNL DOI 10.1074/JBC.M111.231258 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 13033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 644 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 792 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3272 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.357 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3382 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2272 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4600 ; 1.207 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5554 ; 1.408 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 421 ; 6.508 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;28.858 ;24.046 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;14.284 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3705 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 667 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2112 ; 0.338 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 852 ; 0.033 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3447 ; 0.634 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1270 ; 0.663 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1153 ; 1.186 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 114 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0552 53.4339 9.6372 REMARK 3 T TENSOR REMARK 3 T11: -0.0444 T22: 0.0376 REMARK 3 T33: 0.0157 T12: 0.0241 REMARK 3 T13: 0.0004 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.5256 L22: 0.8256 REMARK 3 L33: 1.7457 L12: 0.1682 REMARK 3 L13: -0.7385 L23: -0.9125 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0253 S13: -0.0225 REMARK 3 S21: -0.0572 S22: 0.1167 S23: -0.0447 REMARK 3 S31: -0.0726 S32: -0.1547 S33: -0.1454 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 115 H 227 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2218 26.2472 12.2692 REMARK 3 T TENSOR REMARK 3 T11: -0.1379 T22: 0.1220 REMARK 3 T33: 0.0506 T12: -0.1471 REMARK 3 T13: 0.0084 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.3738 L22: 2.3728 REMARK 3 L33: 1.0931 L12: 1.5377 REMARK 3 L13: 1.9182 L23: 0.9384 REMARK 3 S TENSOR REMARK 3 S11: -0.0519 S12: 0.1397 S13: -0.5754 REMARK 3 S21: 0.0183 S22: 0.1870 S23: -0.1845 REMARK 3 S31: -0.0540 S32: 0.2004 S33: -0.1351 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 107 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2297 60.0152 -1.8044 REMARK 3 T TENSOR REMARK 3 T11: -0.0741 T22: 0.1391 REMARK 3 T33: -0.0438 T12: 0.0735 REMARK 3 T13: 0.0244 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 1.8695 L22: 1.2249 REMARK 3 L33: 1.1042 L12: 0.4086 REMARK 3 L13: 0.6843 L23: 1.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: 0.1210 S13: 0.1020 REMARK 3 S21: -0.0397 S22: 0.0166 S23: 0.0648 REMARK 3 S31: -0.0891 S32: -0.1810 S33: 0.0243 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 211 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0281 31.3697 17.1968 REMARK 3 T TENSOR REMARK 3 T11: -0.1540 T22: 0.1822 REMARK 3 T33: -0.0279 T12: -0.2260 REMARK 3 T13: -0.0132 T23: 0.0665 REMARK 3 L TENSOR REMARK 3 L11: 0.8986 L22: 2.4225 REMARK 3 L33: 2.2084 L12: 0.5648 REMARK 3 L13: -0.1018 L23: -1.8040 REMARK 3 S TENSOR REMARK 3 S11: 0.1189 S12: -0.0760 S13: -0.1255 REMARK 3 S21: 0.1290 S22: -0.2164 S23: -0.0907 REMARK 3 S31: -0.1654 S32: -0.1968 S33: 0.0975 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR 300 CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 91.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 15C8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 4000, 0.2 M DI-AMMONIUM REMARK 280 HYDROGEN PHOSPHATE, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 91.59100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.88009 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.19800 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 91.59100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 52.88009 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.19800 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 91.59100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 52.88009 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.19800 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 105.76018 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.39600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 105.76018 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.39600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 105.76018 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 28.39600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS H 130 REMARK 465 GLY H 131 REMARK 465 ASP H 132 REMARK 465 THR H 133 REMARK 465 THR H 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -0.15 85.18 REMARK 500 SER H 31 -70.75 -55.69 REMARK 500 TYR H 33 171.11 81.82 REMARK 500 SER H 82B 78.16 -161.50 REMARK 500 GLU H 95 -95.57 60.97 REMARK 500 PHE H 148 136.30 -175.23 REMARK 500 PRO H 149 -153.61 -86.68 REMARK 500 PRO H 200 42.04 -103.68 REMARK 500 LEU L 11 94.73 -168.54 REMARK 500 LEU L 47 -60.51 -106.60 REMARK 500 LEU L 51 -46.29 91.15 REMARK 500 SER L 52 -0.99 -144.97 REMARK 500 GLU L 81 -8.04 -57.38 REMARK 500 ASP L 110 141.07 -35.76 REMARK 500 GLN L 156 20.44 -151.91 REMARK 500 ASP L 170 4.43 -155.57 REMARK 500 ASP L 184 -72.87 -63.89 REMARK 500 GLU L 185 -19.97 -43.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G H 229 REMARK 610 P6G H 230 REMARK 610 P6G H 231 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G H 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G H 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G H 231 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QG6 RELATED DB: PDB DBREF 3QG7 H 1 228 PDB 3QG7 3QG7 1 228 DBREF 3QG7 L 1 211 PDB 3QG7 3QG7 1 211 SEQRES 1 H 213 ASP VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 213 PRO SER GLN SER LEU SER LEU THR CYS THR VAL THR GLY SEQRES 3 H 213 TYR SER ILE THR SER ASN TYR ALA TRP ASN TRP ILE ARG SEQRES 4 H 213 GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY PHE ILE SEQRES 5 H 213 SER SER TYR GLY THR THR THR TYR ASN PRO SER LEU LYS SEQRES 6 H 213 SER ARG PHE SER ILE THR ARG ASP THR SER LYS ASN GLN SEQRES 7 H 213 PHE PHE LEU GLN LEU HIS SER VAL THR ILE GLU ASP THR SEQRES 8 H 213 GLY THR TYR PHE CYS THR ARG GLU GLY ASP TYR TRP GLY SEQRES 9 H 213 GLN GLY THR THR LEU THR VAL SER SER ALA LYS THR THR SEQRES 10 H 213 ALA PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP SEQRES 11 H 213 THR THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS SEQRES 12 H 213 GLY TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER SEQRES 13 H 213 GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 14 H 213 LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR SEQRES 15 H 213 VAL THR SER SER THR TRP PRO SER GLN SER ILE THR CYS SEQRES 16 H 213 ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS SEQRES 17 H 213 LYS ILE GLU PRO SER SEQRES 1 L 216 ASP VAL VAL LEU THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 216 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 216 GLN ARG LEU VAL HIS SER ASN GLY ASN ILE TYR LEU HIS SEQRES 4 L 216 TRP PHE LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 216 ILE TYR LYS LEU SER SER ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 216 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 216 LYS ILE SER ARG VAL GLU SER GLU ASP LEU GLY ILE TYR SEQRES 8 L 216 TYR CYS SER GLN THR THR HIS VAL PRO TYR THR PHE GLY SEQRES 9 L 216 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 216 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 216 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 216 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 216 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 216 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 216 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 216 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 216 PRO ILE VAL LYS SER PHE ASN ARG HET P6G H 229 7 HET P6G H 230 10 HET P6G H 231 10 HET NA L 212 1 HETNAM P6G HEXAETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 P6G 3(C12 H26 O7) FORMUL 6 NA NA 1+ FORMUL 7 HOH *51(H2 O) HELIX 1 1 THR H 83 THR H 87 5 5 HELIX 2 2 SER H 163 SER H 165 5 3 HELIX 3 3 PRO H 213 SER H 216 5 4 HELIX 4 4 GLU L 79 LEU L 83 5 5 HELIX 5 5 SER L 121 SER L 127 1 7 HELIX 6 6 LYS L 183 ARG L 188 1 6 SHEET 1 A 4 GLN H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 THR H 25 -1 O THR H 21 N SER H 7 SHEET 3 A 4 GLN H 77 LEU H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 A 4 PHE H 67 ASP H 72 -1 N THR H 70 O PHE H 79 SHEET 1 B 6 LEU H 11 VAL H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 B 6 GLY H 88 ARG H 94 -1 N GLY H 88 O LEU H 109 SHEET 4 B 6 TRP H 35 GLN H 39 -1 N ILE H 37 O PHE H 91 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 57 TYR H 59 -1 O THR H 58 N PHE H 50 SHEET 1 C 4 LEU H 11 VAL H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 C 4 GLY H 88 ARG H 94 -1 N GLY H 88 O LEU H 109 SHEET 4 C 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 SER H 137 TYR H 147 -1 O LEU H 143 N TYR H 122 SHEET 3 D 4 TYR H 185 THR H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 D 4 VAL H 171 THR H 173 -1 N HIS H 172 O SER H 190 SHEET 1 E 4 SER H 120 LEU H 124 0 SHEET 2 E 4 SER H 137 TYR H 147 -1 O LEU H 143 N TYR H 122 SHEET 3 E 4 TYR H 185 THR H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 E 4 VAL H 177 LEU H 178 -1 N VAL H 177 O THR H 186 SHEET 1 F 3 THR H 153 TRP H 157 0 SHEET 2 F 3 THR H 206 HIS H 212 -1 O ASN H 209 N THR H 156 SHEET 3 F 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SHEET 1 G 4 LEU L 4 THR L 7 0 SHEET 2 G 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 G 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 G 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 H 6 SER L 10 SER L 14 0 SHEET 2 H 6 THR L 102 LYS L 107 1 O LYS L 107 N VAL L 13 SHEET 3 H 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 H 6 LEU L 33 GLN L 38 -1 N PHE L 36 O TYR L 87 SHEET 5 H 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 H 6 SER L 53 ARG L 54 -1 O SER L 53 N TYR L 49 SHEET 1 I 4 SER L 10 SER L 14 0 SHEET 2 I 4 THR L 102 LYS L 107 1 O LYS L 107 N VAL L 13 SHEET 3 I 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 I 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 J 4 THR L 114 PHE L 118 0 SHEET 2 J 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 J 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 J 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 K 4 SER L 153 ARG L 155 0 SHEET 2 K 4 ASN L 145 ILE L 150 -1 N TRP L 148 O ARG L 155 SHEET 3 K 4 SER L 191 HIS L 198 -1 O THR L 197 N ASN L 145 SHEET 4 K 4 SER L 201 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 142 CYS H 208 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 148 PRO H 149 0 -11.92 CISPEP 2 GLU H 150 PRO H 151 0 8.16 CISPEP 3 TRP H 199 PRO H 200 0 -3.64 CISPEP 4 THR L 7 PRO L 8 0 -5.23 CISPEP 5 VAL L 94 PRO L 95 0 2.02 CISPEP 6 TYR L 140 PRO L 141 0 10.65 SITE 1 AC1 5 GLN H 16 THR H 57 TYR H 59 PHE H 67 SITE 2 AC1 5 SER H 68 SITE 1 AC2 8 ASP H 1 VAL H 2 SER H 15 TYR H 27 SITE 2 AC2 8 ASN H 32 TYR H 33 ARG H 66 ARG H 94 SITE 1 AC3 5 GLU H 95 GLY H 96 ASP H 101 PHE L 36 SITE 2 AC3 5 THR L 91 CRYST1 183.182 183.182 42.594 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005459 0.003152 0.000000 0.00000 SCALE2 0.000000 0.006304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023477 0.00000