HEADER HYDROLASE 24-JAN-11 3QGN TITLE THE ALLOSTERIC E*-E EQUILIBRIUM IS A KEY PROPERTY OF THE TRYPSIN FOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 333-363; COMPND 5 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 6 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 7 CHAIN; COMPND 8 EC: 3.4.21.5; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 364-622; COMPND 14 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 15 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 16 CHAIN; COMPND 17 EC: 3.4.21.5; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BHK CELLS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: F2; SOURCE 14 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: BHK CELLS KEYWDS SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.NIU,D.GOHARA,Z.CHEN,E.DI CERA REVDAT 5 13-SEP-23 3QGN 1 HETSYN REVDAT 4 29-JUL-20 3QGN 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 08-NOV-17 3QGN 1 SOURCE REVDAT 2 16-NOV-11 3QGN 1 JRNL VERSN REVDAT 1 06-JUL-11 3QGN 0 JRNL AUTH W.NIU,Z.CHEN,P.S.GANDHI,A.D.VOGT,N.POZZI,L.A.PELC,F.ZAPATA, JRNL AUTH 2 E.DI CERA JRNL TITL CRYSTALLOGRAPHIC AND KINETIC EVIDENCE OF ALLOSTERY IN A JRNL TITL 2 TRYPSIN-LIKE PROTEASE. JRNL REF BIOCHEMISTRY V. 50 6301 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21707111 JRNL DOI 10.1021/BI200878C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.NIU,Z.CHEN,L.A.BUSH-PELC,A.BAH,P.S.GANDHI,E.DI CERA REMARK 1 TITL MUTANT N143P REVEALS HOW NA+ ACTIVATES THROMBIN. REMARK 1 REF J.BIOL.CHEM. V. 284 36175 2009 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 19846563 REMARK 1 DOI 10.1074/JBC.M109.069500 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -0.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 16480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.430 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2313 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3125 ; 1.321 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 6.183 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;34.004 ;23.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;18.774 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.239 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1754 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1373 ; 0.581 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2215 ; 1.117 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 940 ; 1.891 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 910 ; 3.034 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4490 -34.4280 21.4960 REMARK 3 T TENSOR REMARK 3 T11: 0.3549 T22: 0.2149 REMARK 3 T33: 0.1027 T12: 0.0640 REMARK 3 T13: 0.0354 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 11.2603 L22: 14.8923 REMARK 3 L33: 2.4972 L12: 1.1827 REMARK 3 L13: 1.4861 L23: -3.6168 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -1.0393 S13: -0.7224 REMARK 3 S21: 0.6472 S22: 0.2080 S23: 0.4512 REMARK 3 S31: 0.5524 S32: -0.0197 S33: -0.2251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7050 -33.4610 16.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.1911 REMARK 3 T33: 0.0958 T12: 0.0399 REMARK 3 T13: 0.0267 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 10.2163 L22: 10.0294 REMARK 3 L33: 12.7578 L12: -3.6705 REMARK 3 L13: 4.1539 L23: 3.5760 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.1676 S13: -0.1827 REMARK 3 S21: -0.1027 S22: -0.1106 S23: -0.4737 REMARK 3 S31: 0.2925 S32: 0.6804 S33: 0.1334 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1250 -18.0600 17.2520 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.2864 REMARK 3 T33: 0.1678 T12: -0.0633 REMARK 3 T13: 0.0156 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 8.5442 L22: 27.6504 REMARK 3 L33: 10.7377 L12: -5.5372 REMARK 3 L13: -2.7141 L23: 9.8374 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: -0.0559 S13: 0.4536 REMARK 3 S21: 0.5252 S22: 0.3583 S23: -1.5471 REMARK 3 S31: -0.1896 S32: 0.6399 S33: -0.2785 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9530 -28.3950 7.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.1832 T22: 0.1700 REMARK 3 T33: 0.0796 T12: -0.0274 REMARK 3 T13: 0.0152 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.4298 L22: 2.8696 REMARK 3 L33: 2.1127 L12: 0.0685 REMARK 3 L13: 0.0577 L23: 0.2112 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: 0.4279 S13: 0.0668 REMARK 3 S21: -0.4677 S22: 0.0327 S23: 0.2746 REMARK 3 S31: 0.1132 S32: -0.0476 S33: -0.1049 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -30.6960 -30.8210 4.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.2833 REMARK 3 T33: 0.2023 T12: -0.0717 REMARK 3 T13: -0.1052 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 7.8666 L22: 7.3035 REMARK 3 L33: 3.2615 L12: -4.6821 REMARK 3 L13: 1.2057 L23: 1.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.2236 S12: 0.5706 S13: -0.8065 REMARK 3 S21: -1.0224 S22: -0.2139 S23: 1.0353 REMARK 3 S31: -0.1664 S32: 0.0361 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 80 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8550 -38.7970 0.1570 REMARK 3 T TENSOR REMARK 3 T11: 0.7352 T22: 0.6447 REMARK 3 T33: 0.3785 T12: 0.0581 REMARK 3 T13: -0.0772 T23: -0.1197 REMARK 3 L TENSOR REMARK 3 L11: 5.4413 L22: 29.3136 REMARK 3 L33: 21.4012 L12: 11.9804 REMARK 3 L13: -5.8461 L23: -2.8795 REMARK 3 S TENSOR REMARK 3 S11: -0.7296 S12: 0.9470 S13: 0.0633 REMARK 3 S21: -2.6885 S22: 1.5686 S23: 0.2951 REMARK 3 S31: 1.0807 S32: 0.3075 S33: -0.8390 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 81 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): -25.5870 -27.9080 16.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.1176 T22: 0.1825 REMARK 3 T33: 0.1059 T12: -0.0351 REMARK 3 T13: 0.0550 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 2.8970 L22: 3.3092 REMARK 3 L33: 1.6160 L12: -0.2505 REMARK 3 L13: 0.8134 L23: 0.3297 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.1586 S13: -0.1527 REMARK 3 S21: -0.0414 S22: 0.0841 S23: 0.4180 REMARK 3 S31: 0.0666 S32: -0.1816 S33: -0.1082 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 130 B 175 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8510 -13.8660 10.8060 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.1592 REMARK 3 T33: 0.0941 T12: -0.0335 REMARK 3 T13: 0.0394 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 3.3862 L22: 6.5139 REMARK 3 L33: 1.5971 L12: -0.8631 REMARK 3 L13: 0.5461 L23: 0.2879 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: 0.1905 S13: 0.2039 REMARK 3 S21: -0.4071 S22: -0.0485 S23: 0.3647 REMARK 3 S31: -0.1826 S32: 0.1448 S33: 0.1179 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 176 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2910 -9.1870 14.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.2288 T22: 0.1289 REMARK 3 T33: 0.2676 T12: -0.0005 REMARK 3 T13: 0.0324 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 15.6478 L22: 4.0730 REMARK 3 L33: 8.7319 L12: 0.8217 REMARK 3 L13: -5.8809 L23: -1.3627 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.0424 S13: 1.0604 REMARK 3 S21: -0.2561 S22: -0.0142 S23: 0.1448 REMARK 3 S31: -0.4934 S32: 0.1857 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 194 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6790 -21.0670 16.6890 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1152 REMARK 3 T33: 0.0518 T12: -0.0187 REMARK 3 T13: 0.0657 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 8.1908 L22: 1.9629 REMARK 3 L33: 5.0550 L12: -1.3130 REMARK 3 L13: 4.6925 L23: -0.9747 REMARK 3 S TENSOR REMARK 3 S11: -0.0671 S12: 0.1331 S13: 0.1811 REMARK 3 S21: -0.0563 S22: 0.0413 S23: -0.0356 REMARK 3 S31: -0.1156 S32: 0.0730 S33: 0.0258 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 219 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7070 -17.3510 16.9850 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.1279 REMARK 3 T33: 0.0875 T12: 0.0194 REMARK 3 T13: 0.0674 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 6.1482 L22: 9.3361 REMARK 3 L33: 5.6961 L12: 3.9826 REMARK 3 L13: -1.5375 L23: -4.6190 REMARK 3 S TENSOR REMARK 3 S11: -0.1073 S12: -0.1516 S13: 0.2017 REMARK 3 S21: -0.1937 S22: 0.0321 S23: 0.0473 REMARK 3 S31: -0.0326 S32: -0.0764 S33: 0.0752 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 243 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): -32.8990 -36.3640 25.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.7719 T22: 1.1666 REMARK 3 T33: 0.7821 T12: -0.5824 REMARK 3 T13: 0.4326 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.7552 L22: 20.6080 REMARK 3 L33: 68.4385 L12: 7.9067 REMARK 3 L13: 14.8803 L23: 44.7584 REMARK 3 S TENSOR REMARK 3 S11: 0.5617 S12: -0.1822 S13: -0.4171 REMARK 3 S21: 1.7258 S22: 0.6486 S23: -1.0511 REMARK 3 S31: 3.7974 S32: -0.5732 S33: -1.2103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QGN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR (VARIMAX HF) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 3JZ1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4I AND 20 % PEG 3350, PH 6.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.08950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.08950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14M REMARK 465 ARG A 15 REMARK 465 LYS B 145 REMARK 465 GLU B 146 REMARK 465 THR B 147 REMARK 465 TRP B 148 REMARK 465 THR B 149 REMARK 465 ALA B 149A REMARK 465 ASN B 149B REMARK 465 VAL B 149C REMARK 465 GLY B 149D REMARK 465 LYS B 149E REMARK 465 GLY B 150 REMARK 465 GLN B 151 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -85.78 -127.27 REMARK 500 GLU B 39 121.35 -176.46 REMARK 500 SER B 48 -169.52 -162.73 REMARK 500 TYR B 60A 82.53 -158.82 REMARK 500 ASN B 60G 68.75 -164.31 REMARK 500 ASN B 78 -12.91 76.46 REMARK 500 GLU B 97A -70.61 -107.38 REMARK 500 PRO B 143 159.99 -49.37 REMARK 500 ARG B 187 -167.78 -125.21 REMARK 500 GLU B 192 -85.57 51.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JZ1 RELATED DB: PDB REMARK 900 MUTANT N143P REVEALS HOW NA+ ACTIVATES THROMBIN REMARK 900 RELATED ID: 3S7K RELATED DB: PDB REMARK 900 RELATED ID: 3S7H RELATED DB: PDB DBREF 3QGN A 1C 15 UNP P00734 THRB_HUMAN 333 363 DBREF 3QGN B 16 247 UNP P00734 THRB_HUMAN 364 622 SEQADV 3QGN PRO B 143 UNP P00734 ASN 506 ENGINEERED MUTATION SEQRES 1 A 31 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 A 31 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 A 31 TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY PRO SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU MODRES 3QGN ASN B 60G ASN GLYCOSYLATION SITE HET IOD A 402 1 HET NAG B 301 14 HET IOD B 401 1 HET IOD B 403 1 HET IOD B 404 1 HET IOD B 405 1 HET IOD B 406 1 HET CL B 407 1 HETNAM IOD IODIDE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 IOD 6(I 1-) FORMUL 4 NAG C8 H15 N O6 FORMUL 10 CL CL 1- FORMUL 11 HOH *150(H2 O) HELIX 1 1 PHE A 7 SER A 11 5 5 HELIX 2 2 THR A 14B ILE A 14K 1 10 HELIX 3 3 ALA B 55 CYS B 58 5 4 HELIX 4 4 PRO B 60B ASP B 60E 5 4 HELIX 5 5 THR B 60I ASN B 62 5 3 HELIX 6 6 ASP B 125 LEU B 130 1 9 HELIX 7 7 GLU B 164 SER B 171 1 8 HELIX 8 8 CYS B 191 SER B 195 5 5 HELIX 9 9 LEU B 234 PHE B 245 1 12 SHEET 1 A 7 SER B 20 ASP B 21 0 SHEET 2 A 7 GLN B 156 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 A 7 LYS B 135 GLY B 140 -1 N GLY B 140 O GLN B 156 SHEET 4 A 7 PRO B 198 LYS B 202 -1 O VAL B 200 N ARG B 137 SHEET 5 A 7 TRP B 207 TRP B 215 -1 O TYR B 208 N MET B 201 SHEET 6 A 7 GLY B 226 HIS B 230 -1 O PHE B 227 N TRP B 215 SHEET 7 A 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 B 7 GLN B 30 ARG B 35 0 SHEET 2 B 7 GLU B 39 LEU B 46 -1 O LEU B 41 N LEU B 33 SHEET 3 B 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 4 B 7 ALA B 104 LEU B 108 -1 O ALA B 104 N THR B 54 SHEET 5 B 7 LYS B 81 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 6 B 7 LEU B 64 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 7 B 7 GLN B 30 ARG B 35 -1 N PHE B 34 O LEU B 65 SHEET 1 C 2 LEU B 60 TYR B 60A 0 SHEET 2 C 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.08 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.04 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.04 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.04 LINK ND2 ASN B 60G C1 NAG B 301 1555 1555 1.44 CISPEP 1 SER B 36A PRO B 37 0 -0.30 CRYST1 122.179 47.980 52.011 90.00 94.31 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008185 0.000000 0.000617 0.00000 SCALE2 0.000000 0.020842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019281 0.00000