HEADER STRUCTURAL PROTEIN 27-JAN-11 3QIJ TITLE PRIMITIVE-MONOCLINIC CRYSTAL STRUCTURE OF THE FERM DOMAIN OF PROTEIN TITLE 2 4.1R COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN 4.1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: P4.1, 4.1R, BAND 4.1, EPB4.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPB41, E41P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CYTOSKELETON, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.NEDYALKOVA,N.ZHONG,Y.TONG,W.TEMPEL,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,H.PARK,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 3QIJ 1 SEQADV REVDAT 2 08-NOV-17 3QIJ 1 REMARK REVDAT 1 09-FEB-11 3QIJ 0 JRNL AUTH L.NEDYALKOVA,N.ZHONG,Y.TONG,W.TEMPEL,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,H.PARK JRNL TITL PRIMITIVE-MONOCLINIC CRYSTAL STRUCTURE OF THE FERM DOMAIN OF JRNL TITL 2 PROTEIN 4.1R JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.927 REMARK 3 FREE R VALUE TEST SET COUNT : 2029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08600 REMARK 3 B22 (A**2) : 1.28300 REMARK 3 B33 (A**2) : -1.16400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4400 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2938 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5976 ; 1.464 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7186 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 543 ; 6.022 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;38.414 ;24.225 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 733 ;13.965 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 672 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4842 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 899 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2716 ; 0.855 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1089 ; 0.222 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4365 ; 1.533 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1684 ; 2.262 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 3.423 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7028 4.0261 79.0759 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0896 REMARK 3 T33: 0.1037 T12: -0.0086 REMARK 3 T13: 0.0483 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.4976 L22: 1.5321 REMARK 3 L33: 3.1928 L12: 0.7997 REMARK 3 L13: 1.2145 L23: 1.4431 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: -0.0570 S13: 0.1497 REMARK 3 S21: 0.0273 S22: -0.1010 S23: 0.0955 REMARK 3 S31: -0.1087 S32: -0.1855 S33: 0.0481 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6911 -12.8480 50.7994 REMARK 3 T TENSOR REMARK 3 T11: 0.0357 T22: 0.0819 REMARK 3 T33: 0.0724 T12: -0.0122 REMARK 3 T13: 0.0281 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.9665 L22: 1.2372 REMARK 3 L33: 2.7027 L12: 0.0972 REMARK 3 L13: 0.4281 L23: 0.8645 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: 0.1956 S13: -0.0214 REMARK 3 S21: -0.0997 S22: 0.0783 S23: -0.0305 REMARK 3 S31: 0.0297 S32: 0.1755 S33: 0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. THE PROGRAMS COOT, BUCCANEER, REMARK 3 ARP/WARP WERE USED DURING REFINEMENT AS WELL AS THE MOLPROBITY REMARK 3 SERVER. REMARK 4 REMARK 4 3QIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51901 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.98900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GG3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M MAGNESIUM CHLORIDE, REMARK 280 1% W/W DISPASE-I, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.73450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL MOLECULE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 SER A 200 REMARK 465 SER A 201 REMARK 465 GLY A 202 REMARK 465 ARG A 203 REMARK 465 GLU A 204 REMARK 465 ASN A 205 REMARK 465 LEU A 206 REMARK 465 TYR A 207 REMARK 465 PHE A 208 REMARK 465 ARG A 276 REMARK 465 GLY A 277 REMARK 465 VAL A 278 REMARK 465 PRO A 453 REMARK 465 GLY A 454 REMARK 465 GLU A 455 REMARK 465 GLN A 456 REMARK 465 GLU A 457 REMARK 465 GLN A 458 REMARK 465 TYR A 459 REMARK 465 MET B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 SER B 200 REMARK 465 SER B 201 REMARK 465 GLY B 202 REMARK 465 ARG B 203 REMARK 465 GLU B 204 REMARK 465 ASN B 205 REMARK 465 LEU B 206 REMARK 465 TYR B 207 REMARK 465 ASN B 258 REMARK 465 ALA B 259 REMARK 465 THR B 260 REMARK 465 SER B 261 REMARK 465 GLY B 454 REMARK 465 GLU B 455 REMARK 465 GLN B 456 REMARK 465 GLU B 457 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 209 CG CD OE1 NE2 REMARK 470 HIS A 211 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 213 CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 HIS A 229 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 231 CE NZ REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LEU A 246 CG CD1 CD2 REMARK 470 ASP A 257 CG OD1 OD2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLN A 295 CG CD OE1 NE2 REMARK 470 GLU A 343 CG CD OE1 OE2 REMARK 470 ASP A 352 CG OD1 OD2 REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 470 SER A 376 OG REMARK 470 LYS A 402 CD CE NZ REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 LYS A 424 CE NZ REMARK 470 LEU A 427 CG CD1 CD2 REMARK 470 LYS A 439 CD CE NZ REMARK 470 LYS A 450 CE NZ REMARK 470 ARG A 471 NE CZ NH1 NH2 REMARK 470 LYS B 213 CE NZ REMARK 470 VAL B 226 CG1 CG2 REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 ASP B 257 CG OD1 OD2 REMARK 470 LYS B 262 NZ REMARK 470 LYS B 273 NZ REMARK 470 ARG B 276 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 317 NE CZ NH1 NH2 REMARK 470 LYS B 361 CG CD CE NZ REMARK 470 GLU B 362 CG CD OE1 OE2 REMARK 470 LYS B 402 CG CD CE NZ REMARK 470 LYS B 404 CE NZ REMARK 470 GLU B 407 CD OE1 OE2 REMARK 470 LYS B 424 CE NZ REMARK 470 LYS B 426 CG CD CE NZ REMARK 470 ARG B 431 CZ NH1 NH2 REMARK 470 LYS B 436 CD CE NZ REMARK 470 ARG B 452 CZ NH1 NH2 REMARK 470 LYS B 466 CD CE NZ REMARK 470 ARG B 471 CD NE CZ NH1 NH2 REMARK 470 LYS B 474 CE NZ REMARK 470 ARG B 488 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 395 CG - SD - CE ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP B 249 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 219 -5.47 72.57 REMARK 500 GLU A 247 61.87 -118.39 REMARK 500 ASP A 348 54.51 -150.73 REMARK 500 SER A 376 58.94 34.93 REMARK 500 ASP A 425 -128.92 72.43 REMARK 500 ARG A 444 -129.41 50.21 REMARK 500 ARG B 444 -119.65 58.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 3QIJ A 211 488 UNP P11171 41_HUMAN 211 488 DBREF 3QIJ B 211 488 UNP P11171 41_HUMAN 211 488 SEQADV 3QIJ MET A 193 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 194 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 195 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 196 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 197 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 198 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 199 UNP P11171 EXPRESSION TAG SEQADV 3QIJ SER A 200 UNP P11171 EXPRESSION TAG SEQADV 3QIJ SER A 201 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLY A 202 UNP P11171 EXPRESSION TAG SEQADV 3QIJ ARG A 203 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLU A 204 UNP P11171 EXPRESSION TAG SEQADV 3QIJ ASN A 205 UNP P11171 EXPRESSION TAG SEQADV 3QIJ LEU A 206 UNP P11171 EXPRESSION TAG SEQADV 3QIJ TYR A 207 UNP P11171 EXPRESSION TAG SEQADV 3QIJ PHE A 208 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLN A 209 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLY A 210 UNP P11171 EXPRESSION TAG SEQADV 3QIJ MET B 193 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 194 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 195 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 196 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 197 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 198 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 199 UNP P11171 EXPRESSION TAG SEQADV 3QIJ SER B 200 UNP P11171 EXPRESSION TAG SEQADV 3QIJ SER B 201 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLY B 202 UNP P11171 EXPRESSION TAG SEQADV 3QIJ ARG B 203 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLU B 204 UNP P11171 EXPRESSION TAG SEQADV 3QIJ ASN B 205 UNP P11171 EXPRESSION TAG SEQADV 3QIJ LEU B 206 UNP P11171 EXPRESSION TAG SEQADV 3QIJ TYR B 207 UNP P11171 EXPRESSION TAG SEQADV 3QIJ PHE B 208 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLN B 209 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLY B 210 UNP P11171 EXPRESSION TAG SEQRES 1 A 296 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 296 LEU TYR PHE GLN GLY HIS CYS LYS VAL SER LEU LEU ASP SEQRES 3 A 296 ASP THR VAL TYR GLU CYS VAL VAL GLU LYS HIS ALA LYS SEQRES 4 A 296 GLY GLN ASP LEU LEU LYS ARG VAL CYS GLU HIS LEU ASN SEQRES 5 A 296 LEU LEU GLU GLU ASP TYR PHE GLY LEU ALA ILE TRP ASP SEQRES 6 A 296 ASN ALA THR SER LYS THR TRP LEU ASP SER ALA LYS GLU SEQRES 7 A 296 ILE LYS LYS GLN VAL ARG GLY VAL PRO TRP ASN PHE THR SEQRES 8 A 296 PHE ASN VAL LYS PHE TYR PRO PRO ASP PRO ALA GLN LEU SEQRES 9 A 296 THR GLU ASP ILE THR ARG TYR TYR LEU CYS LEU GLN LEU SEQRES 10 A 296 ARG GLN ASP ILE VAL ALA GLY ARG LEU PRO CYS SER PHE SEQRES 11 A 296 ALA THR LEU ALA LEU LEU GLY SER TYR THR ILE GLN SER SEQRES 12 A 296 GLU LEU GLY ASP TYR ASP PRO GLU LEU HIS GLY VAL ASP SEQRES 13 A 296 TYR VAL SER ASP PHE LYS LEU ALA PRO ASN GLN THR LYS SEQRES 14 A 296 GLU LEU GLU GLU LYS VAL MET GLU LEU HIS LYS SER TYR SEQRES 15 A 296 ARG SER MET THR PRO ALA GLN ALA ASP LEU GLU PHE LEU SEQRES 16 A 296 GLU ASN ALA LYS LYS LEU SER MET TYR GLY VAL ASP LEU SEQRES 17 A 296 HIS LYS ALA LYS ASP LEU GLU GLY VAL ASP ILE ILE LEU SEQRES 18 A 296 GLY VAL CYS SER SER GLY LEU LEU VAL TYR LYS ASP LYS SEQRES 19 A 296 LEU ARG ILE ASN ARG PHE PRO TRP PRO LYS VAL LEU LYS SEQRES 20 A 296 ILE SER TYR LYS ARG SER SER PHE PHE ILE LYS ILE ARG SEQRES 21 A 296 PRO GLY GLU GLN GLU GLN TYR GLU SER THR ILE GLY PHE SEQRES 22 A 296 LYS LEU PRO SER TYR ARG ALA ALA LYS LYS LEU TRP LYS SEQRES 23 A 296 VAL CYS VAL GLU HIS HIS THR PHE PHE ARG SEQRES 1 B 296 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 296 LEU TYR PHE GLN GLY HIS CYS LYS VAL SER LEU LEU ASP SEQRES 3 B 296 ASP THR VAL TYR GLU CYS VAL VAL GLU LYS HIS ALA LYS SEQRES 4 B 296 GLY GLN ASP LEU LEU LYS ARG VAL CYS GLU HIS LEU ASN SEQRES 5 B 296 LEU LEU GLU GLU ASP TYR PHE GLY LEU ALA ILE TRP ASP SEQRES 6 B 296 ASN ALA THR SER LYS THR TRP LEU ASP SER ALA LYS GLU SEQRES 7 B 296 ILE LYS LYS GLN VAL ARG GLY VAL PRO TRP ASN PHE THR SEQRES 8 B 296 PHE ASN VAL LYS PHE TYR PRO PRO ASP PRO ALA GLN LEU SEQRES 9 B 296 THR GLU ASP ILE THR ARG TYR TYR LEU CYS LEU GLN LEU SEQRES 10 B 296 ARG GLN ASP ILE VAL ALA GLY ARG LEU PRO CYS SER PHE SEQRES 11 B 296 ALA THR LEU ALA LEU LEU GLY SER TYR THR ILE GLN SER SEQRES 12 B 296 GLU LEU GLY ASP TYR ASP PRO GLU LEU HIS GLY VAL ASP SEQRES 13 B 296 TYR VAL SER ASP PHE LYS LEU ALA PRO ASN GLN THR LYS SEQRES 14 B 296 GLU LEU GLU GLU LYS VAL MET GLU LEU HIS LYS SER TYR SEQRES 15 B 296 ARG SER MET THR PRO ALA GLN ALA ASP LEU GLU PHE LEU SEQRES 16 B 296 GLU ASN ALA LYS LYS LEU SER MET TYR GLY VAL ASP LEU SEQRES 17 B 296 HIS LYS ALA LYS ASP LEU GLU GLY VAL ASP ILE ILE LEU SEQRES 18 B 296 GLY VAL CYS SER SER GLY LEU LEU VAL TYR LYS ASP LYS SEQRES 19 B 296 LEU ARG ILE ASN ARG PHE PRO TRP PRO LYS VAL LEU LYS SEQRES 20 B 296 ILE SER TYR LYS ARG SER SER PHE PHE ILE LYS ILE ARG SEQRES 21 B 296 PRO GLY GLU GLN GLU GLN TYR GLU SER THR ILE GLY PHE SEQRES 22 B 296 LYS LEU PRO SER TYR ARG ALA ALA LYS LYS LEU TRP LYS SEQRES 23 B 296 VAL CYS VAL GLU HIS HIS THR PHE PHE ARG HET UNX A 1 1 HET UNX A 2 1 HET UNX A 3 1 HET UNX A 4 1 HET UNX A 8 1 HET UNX A 12 1 HET UNX A 13 1 HET UNX A 14 1 HET UNX A 16 1 HET UNX A 18 1 HET UNX B 5 1 HET UNX B 6 1 HET UNX B 7 1 HET UNX B 9 1 HET UNX B 10 1 HET UNX B 11 1 HET UNX B 15 1 HET UNX B 17 1 HET UNX B 19 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 19(X) FORMUL 22 HOH *220(H2 O) HELIX 1 1 LYS A 231 ASN A 244 1 14 HELIX 2 2 GLU A 247 ASP A 249 5 3 HELIX 3 3 GLU A 270 VAL A 275 1 6 HELIX 4 4 ASP A 292 LEU A 296 5 5 HELIX 5 5 GLU A 298 ALA A 315 1 18 HELIX 6 6 SER A 321 GLY A 338 1 18 HELIX 7 7 ASP A 341 GLY A 346 1 6 HELIX 8 8 THR A 360 SER A 373 1 14 HELIX 9 9 THR A 378 LYS A 391 1 14 HELIX 10 10 SER A 469 PHE A 487 1 19 HELIX 11 11 LYS B 231 ASN B 244 1 14 HELIX 12 12 GLU B 247 ASP B 249 5 3 HELIX 13 13 ASP B 292 LEU B 296 5 5 HELIX 14 14 GLU B 298 ALA B 315 1 18 HELIX 15 15 SER B 321 GLY B 338 1 18 HELIX 16 16 ASP B 348 PHE B 353 5 6 HELIX 17 17 THR B 360 LYS B 372 1 13 HELIX 18 18 THR B 378 LYS B 391 1 14 HELIX 19 19 SER B 469 ARG B 488 1 20 SHEET 1 A 5 VAL A 221 VAL A 225 0 SHEET 2 A 5 HIS A 211 SER A 215 -1 N VAL A 214 O TYR A 222 SHEET 3 A 5 ASN A 281 VAL A 286 1 O PHE A 282 N SER A 215 SHEET 4 A 5 PHE A 251 ASN A 258 -1 N GLY A 252 O ASN A 285 SHEET 5 A 5 SER A 261 TRP A 264 -1 O THR A 263 N ILE A 255 SHEET 1 B 4 ASP A 399 LYS A 404 0 SHEET 2 B 4 ASP A 410 VAL A 415 -1 O LEU A 413 N HIS A 401 SHEET 3 B 4 GLY A 419 LYS A 424 -1 O LEU A 421 N GLY A 414 SHEET 4 B 4 LEU A 427 PRO A 433 -1 O ILE A 429 N VAL A 422 SHEET 1 C 3 VAL A 437 LYS A 443 0 SHEET 2 C 3 SER A 446 ILE A 451 -1 O LYS A 450 N LYS A 439 SHEET 3 C 3 SER A 461 LYS A 466 -1 O SER A 461 N ILE A 451 SHEET 1 D 5 VAL B 221 VAL B 225 0 SHEET 2 D 5 HIS B 211 SER B 215 -1 N VAL B 214 O TYR B 222 SHEET 3 D 5 TRP B 280 VAL B 286 1 O PHE B 284 N SER B 215 SHEET 4 D 5 PHE B 251 ILE B 255 -1 N ALA B 254 O THR B 283 SHEET 5 D 5 THR B 263 TRP B 264 -1 O THR B 263 N ILE B 255 SHEET 1 E 4 ASP B 399 LYS B 404 0 SHEET 2 E 4 ASP B 410 VAL B 415 -1 O LEU B 413 N HIS B 401 SHEET 3 E 4 GLY B 419 LYS B 424 -1 O LEU B 421 N GLY B 414 SHEET 4 E 4 LEU B 427 PRO B 433 -1 O ILE B 429 N VAL B 422 SHEET 1 F 3 VAL B 437 LYS B 443 0 SHEET 2 F 3 SER B 446 ILE B 451 -1 O PHE B 448 N SER B 441 SHEET 3 F 3 SER B 461 LYS B 466 -1 O SER B 461 N ILE B 451 CISPEP 1 VAL B 278 PRO B 279 0 5.14 CRYST1 62.001 53.469 88.766 90.00 106.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016129 0.000000 0.004918 0.00000 SCALE2 0.000000 0.018702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011778 0.00000 MASTER 429 0 19 19 24 0 0 6 4516 2 0 46 END