data_3QIK # _entry.id 3QIK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QIK pdb_00003qik 10.2210/pdb3qik/pdb RCSB RCSB063689 ? ? WWPDB D_1000063689 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.entry_id 3QIK _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-01-27 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shen, L.' 1 'Tong, Y.' 2 'Tempel, W.' 3 'Li, Y.' 4 'Arrowsmith, C.H.' 5 'Edwards, A.M.' 6 'Bountra, C.' 7 'Weigelt, J.' 8 'Park, H.' 9 'Structural Genomics Consortium (SGC)' 10 # _citation.id primary _citation.title 'Crystal structure of the first PDZ domain of PREX1' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shen, L.' 1 ? primary 'Tong, Y.' 2 ? primary 'Tempel, W.' 3 ? primary 'Li, Y.' 4 ? primary 'Arrowsmith, C.H.' 5 ? primary 'Edwards, A.M.' 6 ? primary 'Bountra, C.' 7 ? primary 'Weigelt, J.' 8 ? primary 'Park, H.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein' 11519.360 1 ? ? 'UNP Residues 607-706' ? 2 non-polymer syn 'UNKNOWN ATOM OR ION' ? 8 ? ? ? ? 3 water nat water 18.015 16 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'P-Rex1, PtdIns(3,4,5)-dependent Rac exchanger 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GKNKQLRNDFKLVENILAKRLLILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVE SILNQSFCSRRPLRLLVATKA ; _entity_poly.pdbx_seq_one_letter_code_can ;GKNKQLRNDFKLVENILAKRLLILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVE SILNQSFCSRRPLRLLVATKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN ATOM OR ION' UNX 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 ASN n 1 4 LYS n 1 5 GLN n 1 6 LEU n 1 7 ARG n 1 8 ASN n 1 9 ASP n 1 10 PHE n 1 11 LYS n 1 12 LEU n 1 13 VAL n 1 14 GLU n 1 15 ASN n 1 16 ILE n 1 17 LEU n 1 18 ALA n 1 19 LYS n 1 20 ARG n 1 21 LEU n 1 22 LEU n 1 23 ILE n 1 24 LEU n 1 25 PRO n 1 26 GLN n 1 27 GLU n 1 28 GLU n 1 29 ASP n 1 30 TYR n 1 31 GLY n 1 32 PHE n 1 33 ASP n 1 34 ILE n 1 35 GLU n 1 36 GLU n 1 37 LYS n 1 38 ASN n 1 39 LYS n 1 40 ALA n 1 41 VAL n 1 42 VAL n 1 43 VAL n 1 44 LYS n 1 45 SER n 1 46 VAL n 1 47 GLN n 1 48 ARG n 1 49 GLY n 1 50 SER n 1 51 LEU n 1 52 ALA n 1 53 GLU n 1 54 VAL n 1 55 ALA n 1 56 GLY n 1 57 LEU n 1 58 GLN n 1 59 VAL n 1 60 GLY n 1 61 ARG n 1 62 LYS n 1 63 ILE n 1 64 TYR n 1 65 SER n 1 66 ILE n 1 67 ASN n 1 68 GLU n 1 69 ASP n 1 70 LEU n 1 71 VAL n 1 72 PHE n 1 73 LEU n 1 74 ARG n 1 75 PRO n 1 76 PHE n 1 77 SER n 1 78 GLU n 1 79 VAL n 1 80 GLU n 1 81 SER n 1 82 ILE n 1 83 LEU n 1 84 ASN n 1 85 GLN n 1 86 SER n 1 87 PHE n 1 88 CYS n 1 89 SER n 1 90 ARG n 1 91 ARG n 1 92 PRO n 1 93 LEU n 1 94 ARG n 1 95 LEU n 1 96 LEU n 1 97 VAL n 1 98 ALA n 1 99 THR n 1 100 LYS n 1 101 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PREX1, KIAA1415' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-V2R-pRARE2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 606 606 GLY GLY A . n A 1 2 LYS 2 607 607 LYS LYS A . n A 1 3 ASN 3 608 608 ASN ASN A . n A 1 4 LYS 4 609 609 LYS LYS A . n A 1 5 GLN 5 610 610 GLN GLN A . n A 1 6 LEU 6 611 611 LEU LEU A . n A 1 7 ARG 7 612 612 ARG ARG A . n A 1 8 ASN 8 613 613 ASN ASN A . n A 1 9 ASP 9 614 614 ASP ASP A . n A 1 10 PHE 10 615 615 PHE PHE A . n A 1 11 LYS 11 616 616 LYS LYS A . n A 1 12 LEU 12 617 617 LEU LEU A . n A 1 13 VAL 13 618 618 VAL VAL A . n A 1 14 GLU 14 619 619 GLU GLU A . n A 1 15 ASN 15 620 620 ASN ASN A . n A 1 16 ILE 16 621 621 ILE ILE A . n A 1 17 LEU 17 622 622 LEU LEU A . n A 1 18 ALA 18 623 623 ALA ALA A . n A 1 19 LYS 19 624 624 LYS LYS A . n A 1 20 ARG 20 625 625 ARG ARG A . n A 1 21 LEU 21 626 626 LEU LEU A . n A 1 22 LEU 22 627 627 LEU LEU A . n A 1 23 ILE 23 628 628 ILE ILE A . n A 1 24 LEU 24 629 629 LEU LEU A . n A 1 25 PRO 25 630 630 PRO PRO A . n A 1 26 GLN 26 631 631 GLN GLN A . n A 1 27 GLU 27 632 632 GLU GLU A . n A 1 28 GLU 28 633 633 GLU GLU A . n A 1 29 ASP 29 634 634 ASP ASP A . n A 1 30 TYR 30 635 635 TYR TYR A . n A 1 31 GLY 31 636 636 GLY GLY A . n A 1 32 PHE 32 637 637 PHE PHE A . n A 1 33 ASP 33 638 638 ASP ASP A . n A 1 34 ILE 34 639 639 ILE ILE A . n A 1 35 GLU 35 640 640 GLU GLU A . n A 1 36 GLU 36 641 641 GLU GLU A . n A 1 37 LYS 37 642 642 LYS LYS A . n A 1 38 ASN 38 643 643 ASN ASN A . n A 1 39 LYS 39 644 644 LYS LYS A . n A 1 40 ALA 40 645 645 ALA ALA A . n A 1 41 VAL 41 646 646 VAL VAL A . n A 1 42 VAL 42 647 647 VAL VAL A . n A 1 43 VAL 43 648 648 VAL VAL A . n A 1 44 LYS 44 649 649 LYS LYS A . n A 1 45 SER 45 650 650 SER SER A . n A 1 46 VAL 46 651 651 VAL VAL A . n A 1 47 GLN 47 652 652 GLN GLN A . n A 1 48 ARG 48 653 653 ARG ARG A . n A 1 49 GLY 49 654 654 GLY GLY A . n A 1 50 SER 50 655 655 SER SER A . n A 1 51 LEU 51 656 656 LEU LEU A . n A 1 52 ALA 52 657 657 ALA ALA A . n A 1 53 GLU 53 658 658 GLU GLU A . n A 1 54 VAL 54 659 659 VAL VAL A . n A 1 55 ALA 55 660 660 ALA ALA A . n A 1 56 GLY 56 661 661 GLY GLY A . n A 1 57 LEU 57 662 662 LEU LEU A . n A 1 58 GLN 58 663 663 GLN GLN A . n A 1 59 VAL 59 664 664 VAL VAL A . n A 1 60 GLY 60 665 665 GLY GLY A . n A 1 61 ARG 61 666 666 ARG ARG A . n A 1 62 LYS 62 667 667 LYS LYS A . n A 1 63 ILE 63 668 668 ILE ILE A . n A 1 64 TYR 64 669 669 TYR TYR A . n A 1 65 SER 65 670 670 SER SER A . n A 1 66 ILE 66 671 671 ILE ILE A . n A 1 67 ASN 67 672 672 ASN ASN A . n A 1 68 GLU 68 673 673 GLU GLU A . n A 1 69 ASP 69 674 674 ASP ASP A . n A 1 70 LEU 70 675 675 LEU LEU A . n A 1 71 VAL 71 676 676 VAL VAL A . n A 1 72 PHE 72 677 677 PHE PHE A . n A 1 73 LEU 73 678 678 LEU LEU A . n A 1 74 ARG 74 679 679 ARG ARG A . n A 1 75 PRO 75 680 680 PRO PRO A . n A 1 76 PHE 76 681 681 PHE PHE A . n A 1 77 SER 77 682 682 SER SER A . n A 1 78 GLU 78 683 683 GLU GLU A . n A 1 79 VAL 79 684 684 VAL VAL A . n A 1 80 GLU 80 685 685 GLU GLU A . n A 1 81 SER 81 686 686 SER SER A . n A 1 82 ILE 82 687 687 ILE ILE A . n A 1 83 LEU 83 688 688 LEU LEU A . n A 1 84 ASN 84 689 689 ASN ASN A . n A 1 85 GLN 85 690 690 GLN GLN A . n A 1 86 SER 86 691 691 SER SER A . n A 1 87 PHE 87 692 692 PHE PHE A . n A 1 88 CYS 88 693 693 CYS CYS A . n A 1 89 SER 89 694 694 SER SER A . n A 1 90 ARG 90 695 695 ARG ARG A . n A 1 91 ARG 91 696 696 ARG ARG A . n A 1 92 PRO 92 697 697 PRO PRO A . n A 1 93 LEU 93 698 698 LEU LEU A . n A 1 94 ARG 94 699 699 ARG ARG A . n A 1 95 LEU 95 700 700 LEU LEU A . n A 1 96 LEU 96 701 701 LEU LEU A . n A 1 97 VAL 97 702 702 VAL VAL A . n A 1 98 ALA 98 703 703 ALA ALA A . n A 1 99 THR 99 704 704 THR THR A . n A 1 100 LYS 100 705 705 LYS LYS A . n A 1 101 ALA 101 706 706 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX 1 1 1 UNX UNX A . C 2 UNX 1 2 2 UNX UNX A . D 2 UNX 1 3 3 UNX UNX A . E 2 UNX 1 4 4 UNX UNX A . F 2 UNX 1 5 5 UNX UNX A . G 2 UNX 1 6 6 UNX UNX A . H 2 UNX 1 7 7 UNX UNX A . I 2 UNX 1 8 8 UNX UNX A . J 3 HOH 1 9 9 HOH HOH A . J 3 HOH 2 10 10 HOH HOH A . J 3 HOH 3 11 11 HOH HOH A . J 3 HOH 4 12 12 HOH HOH A . J 3 HOH 5 13 13 HOH HOH A . J 3 HOH 6 14 14 HOH HOH A . J 3 HOH 7 15 15 HOH HOH A . J 3 HOH 8 16 16 HOH HOH A . J 3 HOH 9 17 17 HOH HOH A . J 3 HOH 10 707 2 HOH HOH A . J 3 HOH 11 708 3 HOH HOH A . J 3 HOH 12 709 4 HOH HOH A . J 3 HOH 13 710 5 HOH HOH A . J 3 HOH 14 711 6 HOH HOH A . J 3 HOH 15 712 7 HOH HOH A . J 3 HOH 16 713 8 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 633 ? CD ? A GLU 28 CD 2 1 Y 1 A GLU 633 ? OE1 ? A GLU 28 OE1 3 1 Y 1 A GLU 633 ? OE2 ? A GLU 28 OE2 4 1 Y 1 A LYS 642 ? CG ? A LYS 37 CG 5 1 Y 1 A LYS 642 ? CD ? A LYS 37 CD 6 1 Y 1 A LYS 642 ? CE ? A LYS 37 CE 7 1 Y 1 A LYS 642 ? NZ ? A LYS 37 NZ 8 1 Y 1 A ASN 643 ? CG ? A ASN 38 CG 9 1 Y 1 A ASN 643 ? OD1 ? A ASN 38 OD1 10 1 Y 1 A ASN 643 ? ND2 ? A ASN 38 ND2 11 1 Y 1 A LYS 644 ? CG ? A LYS 39 CG 12 1 Y 1 A LYS 644 ? CD ? A LYS 39 CD 13 1 Y 1 A LYS 644 ? CE ? A LYS 39 CE 14 1 Y 1 A LYS 644 ? NZ ? A LYS 39 NZ 15 1 Y 1 A GLN 652 ? CD ? A GLN 47 CD 16 1 Y 1 A GLN 652 ? OE1 ? A GLN 47 OE1 17 1 Y 1 A GLN 652 ? NE2 ? A GLN 47 NE2 18 1 Y 1 A ARG 653 ? CD ? A ARG 48 CD 19 1 Y 1 A ARG 653 ? NE ? A ARG 48 NE 20 1 Y 1 A ARG 653 ? CZ ? A ARG 48 CZ 21 1 Y 1 A ARG 653 ? NH1 ? A ARG 48 NH1 22 1 Y 1 A ARG 653 ? NH2 ? A ARG 48 NH2 23 1 Y 1 A ARG 696 ? NE ? A ARG 91 NE 24 1 Y 1 A ARG 696 ? CZ ? A ARG 91 CZ 25 1 Y 1 A ARG 696 ? NH1 ? A ARG 91 NH1 26 1 Y 1 A ARG 696 ? NH2 ? A ARG 91 NH2 27 1 Y 1 A LYS 705 ? CD ? A LYS 100 CD 28 1 Y 1 A LYS 705 ? CE ? A LYS 100 CE 29 1 Y 1 A LYS 705 ? NZ ? A LYS 100 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 StructureStudio . ? ? ? ? 'data collection' ? ? ? 8 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _cell.entry_id 3QIK _cell.length_a 78.135 _cell.length_b 78.135 _cell.length_c 54.691 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QIK _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3QIK _exptl.method 'X-RAY DIFFRACTION' # loop_ _exptl_crystal.id _exptl_crystal.density_percent_sol _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 70.4 4.2 ? ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, SITTING DROP' 6.2 293 '1.2M lithium sulfate, 0.5M ammonium sulfate, 0.1M sodium citrate, pH 6.2, vapor diffusion, sitting drop, temperature 293K' ? ? 2 'VAPOR DIFFUSION, SITTING DROP' 5.6 293 ;1.2M lithium sulfate, 0.5M ammonium sulfate, 0.1M sodium citrate. Soaked for 6 hours in 0.01 M potassium hexaiodoplatin-(IV)-ate and mother liquor, pH 5.6, vapor diffusion, sitting drop, temperature 293K ; ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' 'RIGAKU RAXIS' 2011-01-11 ? 2 CCD 'RIGAKU SATURN A200' 2011-01-17 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' ? 1 M x-ray 2 'SINGLE WAVELENGTH' ? 1 M x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 'ROTATING ANODE' 'RIGAKU FR-E SUPERBRIGHT' 1.5418 ? ? ? 2 'ROTATING ANODE' 'RIGAKU FR-E SUPERBRIGHT' 1.5418 ? ? ? # _reflns.entry_id 3QIK _reflns.d_resolution_high 2.270 _reflns.d_resolution_low 25.000 _reflns.number_obs 8971 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_netI_over_sigmaI 15.100 _reflns.pdbx_chi_squared 1.919 _reflns.pdbx_redundancy 10.400 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.270 2.350 ? ? ? 0.674 ? ? 0.965 10.400 ? 870 100.000 ? 1 2.350 2.450 ? ? ? 0.568 ? ? 0.940 10.500 ? 870 100.000 ? 2 2.450 2.560 ? ? ? 0.429 ? ? 1.020 10.500 ? 899 100.000 ? 3 2.560 2.690 ? ? ? 0.300 ? ? 1.091 10.600 ? 889 100.000 ? 4 2.690 2.860 ? ? ? 0.212 ? ? 1.309 10.600 ? 882 100.000 ? 5 2.860 3.080 ? ? ? 0.149 ? ? 1.650 10.600 ? 891 100.000 ? 6 3.080 3.390 ? ? ? 0.093 ? ? 2.462 10.600 ? 888 100.000 ? 7 3.390 3.880 ? ? ? 0.071 ? ? 3.173 10.400 ? 899 100.000 ? 8 3.880 4.880 ? ? ? 0.054 ? ? 3.446 10.300 ? 917 100.000 ? 9 4.880 25.000 ? ? ? 0.040 ? ? 3.064 9.900 ? 966 100.000 ? 10 # _refine.entry_id 3QIK _refine.ls_d_res_high 2.2850 _refine.ls_d_res_low 20.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.9440 _refine.ls_number_reflns_obs 8903 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY. Programs phaser, dm, arp/warp were also used during density improvement and model refinement. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2440 _refine.ls_R_factor_R_work 0.2424 _refine.ls_wR_factor_R_work 0.2310 _refine.ls_R_factor_R_free 0.2691 _refine.ls_wR_factor_R_free 0.2640 _refine.ls_percent_reflns_R_free 4.7400 _refine.ls_number_reflns_R_free 422 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 33.4650 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.2790 _refine.aniso_B[2][2] 1.2790 _refine.aniso_B[3][3] -1.9190 _refine.aniso_B[1][2] 0.6400 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9350 _refine.correlation_coeff_Fo_to_Fc_free 0.9230 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1930 _refine.overall_SU_ML 0.1460 _refine.overall_SU_B 5.7960 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 59.780 _refine.B_iso_min 26.080 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.221 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 781 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 805 _refine_hist.d_res_high 2.2850 _refine_hist.d_res_low 20.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 801 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 552 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1084 1.190 1.992 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1355 0.810 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 104 5.716 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35 37.247 24.571 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 149 14.422 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 11.913 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 130 0.072 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 886 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 156 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 508 0.661 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 205 0.099 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 820 1.307 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 293 1.793 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 262 3.177 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 2.344 2.285 629 91.892 542 0.378 36 0.417 . . . . . 'X-RAY DIFFRACTION' 20 2.407 2.344 636 99.686 598 0.334 36 0.441 . . . . . 'X-RAY DIFFRACTION' 20 2.476 2.407 625 99.680 594 0.334 29 0.307 . . . . . 'X-RAY DIFFRACTION' 20 2.551 2.476 584 99.658 550 0.331 32 0.297 . . . . . 'X-RAY DIFFRACTION' 20 2.633 2.551 602 99.169 574 0.303 23 0.304 . . . . . 'X-RAY DIFFRACTION' 20 2.724 2.633 559 99.463 541 0.303 15 0.237 . . . . . 'X-RAY DIFFRACTION' 20 2.825 2.724 526 98.859 493 0.278 27 0.398 . . . . . 'X-RAY DIFFRACTION' 20 2.937 2.825 535 99.065 505 0.264 25 0.220 . . . . . 'X-RAY DIFFRACTION' 20 3.065 2.937 508 99.606 481 0.261 25 0.319 . . . . . 'X-RAY DIFFRACTION' 20 3.211 3.065 479 98.956 456 0.281 18 0.274 . . . . . 'X-RAY DIFFRACTION' 20 3.380 3.211 471 99.363 448 0.233 20 0.276 . . . . . 'X-RAY DIFFRACTION' 20 3.578 3.380 423 100.000 400 0.231 23 0.261 . . . . . 'X-RAY DIFFRACTION' 20 3.817 3.578 427 99.766 401 0.237 25 0.248 . . . . . 'X-RAY DIFFRACTION' 20 4.110 3.817 386 99.741 375 0.212 10 0.380 . . . . . 'X-RAY DIFFRACTION' 20 4.483 4.110 359 99.721 341 0.199 17 0.207 . . . . . 'X-RAY DIFFRACTION' 20 4.981 4.483 339 99.410 323 0.187 14 0.145 . . . . . 'X-RAY DIFFRACTION' 20 5.694 4.981 290 98.966 274 0.209 13 0.248 . . . . . 'X-RAY DIFFRACTION' 20 6.836 5.694 264 99.621 247 0.251 16 0.356 . . . . . 'X-RAY DIFFRACTION' 20 9.148 6.836 210 100.000 199 0.238 11 0.277 . . . . . 'X-RAY DIFFRACTION' 20 20.000 9.148 146 100.000 139 0.203 7 0.188 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3QIK _struct.title 'Crystal structure of the first PDZ domain of PREX1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QIK _struct_keywords.text 'pdz domain, structural genomics consortium, SGC, HYDROLASE REGULATOR' _struct_keywords.pdbx_keywords 'HYDROLASE REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PREX1_HUMAN _struct_ref.pdbx_db_accession Q8TCU6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KNKQLRNDFKLVENILAKRLLILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVES ILNQSFCSRRPLRLLVATKA ; _struct_ref.pdbx_align_begin 607 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QIK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8TCU6 _struct_ref_seq.db_align_beg 607 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 706 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 607 _struct_ref_seq.pdbx_auth_seq_align_end 706 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3QIK _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8TCU6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 606 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2480 ? 1 MORE -14 ? 1 'SSA (A^2)' 10790 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 18.2303333333 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ILE A 16 ? GLY A 606 ILE A 621 1 ? 16 HELX_P HELX_P2 2 SER A 50 ? GLY A 56 ? SER A 655 GLY A 661 1 ? 7 HELX_P HELX_P3 3 PRO A 75 ? SER A 89 ? PRO A 680 SER A 694 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 18 ? ILE A 23 ? ALA A 623 ILE A 628 A 2 LEU A 93 ? ALA A 98 ? LEU A 698 ALA A 703 A 3 ILE A 63 ? ILE A 66 ? ILE A 668 ILE A 671 A 4 ASP A 69 ? LEU A 70 ? ASP A 674 LEU A 675 B 1 PHE A 32 ? LYS A 37 ? PHE A 637 LYS A 642 B 2 ALA A 40 ? VAL A 46 ? ALA A 645 VAL A 651 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 23 ? N ILE A 628 O LEU A 93 ? O LEU A 698 A 2 3 O LEU A 96 ? O LEU A 701 N TYR A 64 ? N TYR A 669 A 3 4 N ILE A 66 ? N ILE A 671 O ASP A 69 ? O ASP A 674 B 1 2 N GLU A 35 ? N GLU A 640 O VAL A 42 ? O VAL A 647 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 631 ? ? -111.07 -145.08 2 1 ASP A 634 ? ? -169.93 -163.09 3 1 ASN A 643 ? ? 47.13 -124.77 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # _phasing.method SAD # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 ILE N N N N 140 ILE CA C N S 141 ILE C C N N 142 ILE O O N N 143 ILE CB C N S 144 ILE CG1 C N N 145 ILE CG2 C N N 146 ILE CD1 C N N 147 ILE OXT O N N 148 ILE H H N N 149 ILE H2 H N N 150 ILE HA H N N 151 ILE HB H N N 152 ILE HG12 H N N 153 ILE HG13 H N N 154 ILE HG21 H N N 155 ILE HG22 H N N 156 ILE HG23 H N N 157 ILE HD11 H N N 158 ILE HD12 H N N 159 ILE HD13 H N N 160 ILE HXT H N N 161 LEU N N N N 162 LEU CA C N S 163 LEU C C N N 164 LEU O O N N 165 LEU CB C N N 166 LEU CG C N N 167 LEU CD1 C N N 168 LEU CD2 C N N 169 LEU OXT O N N 170 LEU H H N N 171 LEU H2 H N N 172 LEU HA H N N 173 LEU HB2 H N N 174 LEU HB3 H N N 175 LEU HG H N N 176 LEU HD11 H N N 177 LEU HD12 H N N 178 LEU HD13 H N N 179 LEU HD21 H N N 180 LEU HD22 H N N 181 LEU HD23 H N N 182 LEU HXT H N N 183 LYS N N N N 184 LYS CA C N S 185 LYS C C N N 186 LYS O O N N 187 LYS CB C N N 188 LYS CG C N N 189 LYS CD C N N 190 LYS CE C N N 191 LYS NZ N N N 192 LYS OXT O N N 193 LYS H H N N 194 LYS H2 H N N 195 LYS HA H N N 196 LYS HB2 H N N 197 LYS HB3 H N N 198 LYS HG2 H N N 199 LYS HG3 H N N 200 LYS HD2 H N N 201 LYS HD3 H N N 202 LYS HE2 H N N 203 LYS HE3 H N N 204 LYS HZ1 H N N 205 LYS HZ2 H N N 206 LYS HZ3 H N N 207 LYS HXT H N N 208 PHE N N N N 209 PHE CA C N S 210 PHE C C N N 211 PHE O O N N 212 PHE CB C N N 213 PHE CG C Y N 214 PHE CD1 C Y N 215 PHE CD2 C Y N 216 PHE CE1 C Y N 217 PHE CE2 C Y N 218 PHE CZ C Y N 219 PHE OXT O N N 220 PHE H H N N 221 PHE H2 H N N 222 PHE HA H N N 223 PHE HB2 H N N 224 PHE HB3 H N N 225 PHE HD1 H N N 226 PHE HD2 H N N 227 PHE HE1 H N N 228 PHE HE2 H N N 229 PHE HZ H N N 230 PHE HXT H N N 231 PRO N N N N 232 PRO CA C N S 233 PRO C C N N 234 PRO O O N N 235 PRO CB C N N 236 PRO CG C N N 237 PRO CD C N N 238 PRO OXT O N N 239 PRO H H N N 240 PRO HA H N N 241 PRO HB2 H N N 242 PRO HB3 H N N 243 PRO HG2 H N N 244 PRO HG3 H N N 245 PRO HD2 H N N 246 PRO HD3 H N N 247 PRO HXT H N N 248 SER N N N N 249 SER CA C N S 250 SER C C N N 251 SER O O N N 252 SER CB C N N 253 SER OG O N N 254 SER OXT O N N 255 SER H H N N 256 SER H2 H N N 257 SER HA H N N 258 SER HB2 H N N 259 SER HB3 H N N 260 SER HG H N N 261 SER HXT H N N 262 THR N N N N 263 THR CA C N S 264 THR C C N N 265 THR O O N N 266 THR CB C N R 267 THR OG1 O N N 268 THR CG2 C N N 269 THR OXT O N N 270 THR H H N N 271 THR H2 H N N 272 THR HA H N N 273 THR HB H N N 274 THR HG1 H N N 275 THR HG21 H N N 276 THR HG22 H N N 277 THR HG23 H N N 278 THR HXT H N N 279 TYR N N N N 280 TYR CA C N S 281 TYR C C N N 282 TYR O O N N 283 TYR CB C N N 284 TYR CG C Y N 285 TYR CD1 C Y N 286 TYR CD2 C Y N 287 TYR CE1 C Y N 288 TYR CE2 C Y N 289 TYR CZ C Y N 290 TYR OH O N N 291 TYR OXT O N N 292 TYR H H N N 293 TYR H2 H N N 294 TYR HA H N N 295 TYR HB2 H N N 296 TYR HB3 H N N 297 TYR HD1 H N N 298 TYR HD2 H N N 299 TYR HE1 H N N 300 TYR HE2 H N N 301 TYR HH H N N 302 TYR HXT H N N 303 VAL N N N N 304 VAL CA C N S 305 VAL C C N N 306 VAL O O N N 307 VAL CB C N N 308 VAL CG1 C N N 309 VAL CG2 C N N 310 VAL OXT O N N 311 VAL H H N N 312 VAL H2 H N N 313 VAL HA H N N 314 VAL HB H N N 315 VAL HG11 H N N 316 VAL HG12 H N N 317 VAL HG13 H N N 318 VAL HG21 H N N 319 VAL HG22 H N N 320 VAL HG23 H N N 321 VAL HXT H N N 322 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 PHE N CA sing N N 197 PHE N H sing N N 198 PHE N H2 sing N N 199 PHE CA C sing N N 200 PHE CA CB sing N N 201 PHE CA HA sing N N 202 PHE C O doub N N 203 PHE C OXT sing N N 204 PHE CB CG sing N N 205 PHE CB HB2 sing N N 206 PHE CB HB3 sing N N 207 PHE CG CD1 doub Y N 208 PHE CG CD2 sing Y N 209 PHE CD1 CE1 sing Y N 210 PHE CD1 HD1 sing N N 211 PHE CD2 CE2 doub Y N 212 PHE CD2 HD2 sing N N 213 PHE CE1 CZ doub Y N 214 PHE CE1 HE1 sing N N 215 PHE CE2 CZ sing Y N 216 PHE CE2 HE2 sing N N 217 PHE CZ HZ sing N N 218 PHE OXT HXT sing N N 219 PRO N CA sing N N 220 PRO N CD sing N N 221 PRO N H sing N N 222 PRO CA C sing N N 223 PRO CA CB sing N N 224 PRO CA HA sing N N 225 PRO C O doub N N 226 PRO C OXT sing N N 227 PRO CB CG sing N N 228 PRO CB HB2 sing N N 229 PRO CB HB3 sing N N 230 PRO CG CD sing N N 231 PRO CG HG2 sing N N 232 PRO CG HG3 sing N N 233 PRO CD HD2 sing N N 234 PRO CD HD3 sing N N 235 PRO OXT HXT sing N N 236 SER N CA sing N N 237 SER N H sing N N 238 SER N H2 sing N N 239 SER CA C sing N N 240 SER CA CB sing N N 241 SER CA HA sing N N 242 SER C O doub N N 243 SER C OXT sing N N 244 SER CB OG sing N N 245 SER CB HB2 sing N N 246 SER CB HB3 sing N N 247 SER OG HG sing N N 248 SER OXT HXT sing N N 249 THR N CA sing N N 250 THR N H sing N N 251 THR N H2 sing N N 252 THR CA C sing N N 253 THR CA CB sing N N 254 THR CA HA sing N N 255 THR C O doub N N 256 THR C OXT sing N N 257 THR CB OG1 sing N N 258 THR CB CG2 sing N N 259 THR CB HB sing N N 260 THR OG1 HG1 sing N N 261 THR CG2 HG21 sing N N 262 THR CG2 HG22 sing N N 263 THR CG2 HG23 sing N N 264 THR OXT HXT sing N N 265 TYR N CA sing N N 266 TYR N H sing N N 267 TYR N H2 sing N N 268 TYR CA C sing N N 269 TYR CA CB sing N N 270 TYR CA HA sing N N 271 TYR C O doub N N 272 TYR C OXT sing N N 273 TYR CB CG sing N N 274 TYR CB HB2 sing N N 275 TYR CB HB3 sing N N 276 TYR CG CD1 doub Y N 277 TYR CG CD2 sing Y N 278 TYR CD1 CE1 sing Y N 279 TYR CD1 HD1 sing N N 280 TYR CD2 CE2 doub Y N 281 TYR CD2 HD2 sing N N 282 TYR CE1 CZ doub Y N 283 TYR CE1 HE1 sing N N 284 TYR CE2 CZ sing Y N 285 TYR CE2 HE2 sing N N 286 TYR CZ OH sing N N 287 TYR OH HH sing N N 288 TYR OXT HXT sing N N 289 VAL N CA sing N N 290 VAL N H sing N N 291 VAL N H2 sing N N 292 VAL CA C sing N N 293 VAL CA CB sing N N 294 VAL CA HA sing N N 295 VAL C O doub N N 296 VAL C OXT sing N N 297 VAL CB CG1 sing N N 298 VAL CB CG2 sing N N 299 VAL CB HB sing N N 300 VAL CG1 HG11 sing N N 301 VAL CG1 HG12 sing N N 302 VAL CG1 HG13 sing N N 303 VAL CG2 HG21 sing N N 304 VAL CG2 HG22 sing N N 305 VAL CG2 HG23 sing N N 306 VAL OXT HXT sing N N 307 # _atom_sites.entry_id 3QIK _atom_sites.fract_transf_matrix[1][1] 0.012798 _atom_sites.fract_transf_matrix[1][2] 0.007389 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014778 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018285 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S X # loop_