HEADER OXIDOREDUCTASE 27-JAN-11 3QIV TITLE CRYSTAL STRUCTURE OF A PUTATIVE SHORT-CHAIN DEHYDROGENASE OR 3- TITLE 2 OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE FROM MYCOBACTERIUM TITLE 3 PARATUBERCULOSIS ATCC BAA-968 / K-10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE OR 3-OXOACYL-[ACYL-CARRIER- COMPND 3 PROTEIN] REDUCTASE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1770; SOURCE 4 STRAIN: ATCC BAA-968 / K-10; SOURCE 5 GENE: MAP_0603; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, NADB_ROSSMAN SUPERFAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3QIV 1 SEQADV REVDAT 3 08-NOV-17 3QIV 1 REMARK REVDAT 2 22-APR-15 3QIV 1 JRNL VERSN REVDAT 1 16-FEB-11 3QIV 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 23922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1221 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1623 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.4320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2857 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3864 ; 0.877 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4470 ; 0.806 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 5.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;35.972 ;25.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;13.605 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.058 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3279 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 559 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1925 ; 0.342 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 825 ; 0.050 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3014 ; 0.650 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 932 ; 0.941 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 850 ; 1.588 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5920 38.8230 14.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.1642 REMARK 3 T33: 0.1689 T12: -0.0159 REMARK 3 T13: 0.0179 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 4.3004 L22: 5.4252 REMARK 3 L33: 6.0243 L12: -0.3549 REMARK 3 L13: -1.2567 L23: 0.4704 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.1267 S13: -0.2928 REMARK 3 S21: 0.1431 S22: -0.1617 S23: 0.4664 REMARK 3 S31: 0.1736 S32: -0.7959 S33: 0.1666 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0230 45.5280 7.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.2088 T22: 0.0953 REMARK 3 T33: 0.2022 T12: 0.0202 REMARK 3 T13: 0.0227 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.8280 L22: 0.2228 REMARK 3 L33: 5.2822 L12: -0.5620 REMARK 3 L13: -2.2073 L23: 0.4463 REMARK 3 S TENSOR REMARK 3 S11: 0.1468 S12: 0.2100 S13: 0.2171 REMARK 3 S21: -0.0649 S22: -0.0505 S23: -0.0194 REMARK 3 S31: -0.2872 S32: -0.4241 S33: -0.0963 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2230 32.1260 14.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.2458 T22: 0.0313 REMARK 3 T33: 0.1417 T12: -0.0235 REMARK 3 T13: 0.0203 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 5.6504 L22: 4.5811 REMARK 3 L33: 3.1347 L12: -0.1041 REMARK 3 L13: -0.4753 L23: 0.7778 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: 0.1261 S13: -0.3357 REMARK 3 S21: -0.1684 S22: -0.0497 S23: 0.1532 REMARK 3 S31: 0.4312 S32: -0.0625 S33: 0.0954 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2230 0.1700 23.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.1930 REMARK 3 T33: 0.1558 T12: -0.0258 REMARK 3 T13: 0.0050 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 4.4350 L22: 2.2870 REMARK 3 L33: 2.9344 L12: -0.2884 REMARK 3 L13: -0.2282 L23: 0.4714 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.6508 S13: -0.2462 REMARK 3 S21: 0.1244 S22: 0.1102 S23: -0.0301 REMARK 3 S31: 0.0079 S32: 0.0771 S33: -0.1385 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5980 1.4300 6.2170 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.3034 REMARK 3 T33: 0.1578 T12: 0.0050 REMARK 3 T13: 0.0144 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 16.3110 L22: 0.0209 REMARK 3 L33: 2.3402 L12: -0.1939 REMARK 3 L13: -6.1680 L23: 0.0630 REMARK 3 S TENSOR REMARK 3 S11: 0.1475 S12: -0.8627 S13: 0.2414 REMARK 3 S21: -0.0013 S22: -0.0504 S23: 0.0235 REMARK 3 S31: -0.0407 S32: 0.3671 S33: -0.0971 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3480 12.4350 13.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.0973 REMARK 3 T33: 0.1758 T12: -0.0180 REMARK 3 T13: 0.0432 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.8726 L22: 4.1115 REMARK 3 L33: 4.3711 L12: 0.4859 REMARK 3 L13: -0.3298 L23: 0.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.1594 S12: 0.0293 S13: 0.2971 REMARK 3 S21: 0.0511 S22: 0.0686 S23: -0.1008 REMARK 3 S31: -0.3875 S32: 0.1212 S33: -0.2280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3GVC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16.94 MG/ML MYPAA.00414.C.A1, 300 MM REMARK 280 MAGNESSIUM FORMATE, 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.72000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.12750 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.12750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.44000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.44000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.44000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 THR A 145 REMARK 465 ALA A 146 REMARK 465 ALA A 147 REMARK 465 TRP A 148 REMARK 465 LEU A 149 REMARK 465 TYR A 150 REMARK 465 SER A 151 REMARK 465 ASN A 152 REMARK 465 TYR A 153 REMARK 465 TYR A 154 REMARK 465 GLY A 155 REMARK 465 GLY A 185 REMARK 465 PRO A 186 REMARK 465 ILE A 187 REMARK 465 ASP A 188 REMARK 465 THR A 189 REMARK 465 GLU A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 ARG A 193 REMARK 465 THR A 194 REMARK 465 THR A 195 REMARK 465 THR A 196 REMARK 465 PRO A 197 REMARK 465 LYS A 198 REMARK 465 GLU A 199 REMARK 465 MET A 200 REMARK 465 VAL A 201 REMARK 465 ASP A 202 REMARK 465 ASP A 203 REMARK 465 ILE A 204 REMARK 465 VAL A 205 REMARK 465 LYS A 206 REMARK 465 GLY A 207 REMARK 465 LEU A 208 REMARK 465 PRO A 209 REMARK 465 LEU A 210 REMARK 465 SER A 211 REMARK 465 ARG A 212 REMARK 465 MET A 213 REMARK 465 GLY A 214 REMARK 465 THR A 215 REMARK 465 ASP A 242 REMARK 465 GLY A 243 REMARK 465 GLY A 244 REMARK 465 GLN A 245 REMARK 465 ILE A 246 REMARK 465 ILE A 247 REMARK 465 ARG A 248 REMARK 465 SER A 249 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 SER B 144 REMARK 465 THR B 145 REMARK 465 ALA B 146 REMARK 465 ALA B 147 REMARK 465 TRP B 148 REMARK 465 LEU B 149 REMARK 465 TYR B 150 REMARK 465 SER B 151 REMARK 465 ASN B 152 REMARK 465 TYR B 153 REMARK 465 TYR B 154 REMARK 465 GLY B 155 REMARK 465 LEU B 156 REMARK 465 ALA B 157 REMARK 465 LYS B 158 REMARK 465 GLY B 185 REMARK 465 PRO B 186 REMARK 465 ILE B 187 REMARK 465 ASP B 188 REMARK 465 THR B 189 REMARK 465 GLU B 190 REMARK 465 ALA B 191 REMARK 465 ASN B 192 REMARK 465 ARG B 193 REMARK 465 THR B 194 REMARK 465 THR B 195 REMARK 465 THR B 196 REMARK 465 PRO B 197 REMARK 465 LYS B 198 REMARK 465 GLU B 199 REMARK 465 MET B 200 REMARK 465 VAL B 201 REMARK 465 ASP B 202 REMARK 465 ASP B 203 REMARK 465 ILE B 204 REMARK 465 VAL B 205 REMARK 465 LYS B 206 REMARK 465 GLY B 207 REMARK 465 LEU B 208 REMARK 465 PRO B 209 REMARK 465 LEU B 210 REMARK 465 SER B 211 REMARK 465 ARG B 212 REMARK 465 MET B 213 REMARK 465 GLY B 214 REMARK 465 THR B 215 REMARK 465 ASP B 242 REMARK 465 GLY B 243 REMARK 465 GLY B 244 REMARK 465 GLN B 245 REMARK 465 ILE B 246 REMARK 465 ILE B 247 REMARK 465 ARG B 248 REMARK 465 SER B 249 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 GLN A 48 CG CD OE1 NE2 REMARK 470 PHE A 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 SER A 144 OG REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 241 CG1 CG2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 PHE B 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET B 96 CG SD CE REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 ILE B 161 CG1 CG2 CD1 REMARK 470 ASN B 162 CG OD1 ND2 REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 184 CG CD REMARK 470 ASP B 217 CG OD1 OD2 REMARK 470 SER B 232 OG REMARK 470 VAL B 241 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 157 -30.17 83.48 REMARK 500 PHE B 93 76.53 -69.17 REMARK 500 ILE B 161 -9.95 -59.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYPAA.00414.C RELATED DB: TARGETDB DBREF 3QIV A 1 249 UNP Q743I2 Q743I2_MYCPA 1 249 DBREF 3QIV B 1 249 UNP Q743I2 Q743I2_MYCPA 1 249 SEQADV 3QIV GLY A -3 UNP Q743I2 EXPRESSION TAG SEQADV 3QIV PRO A -2 UNP Q743I2 EXPRESSION TAG SEQADV 3QIV GLY A -1 UNP Q743I2 EXPRESSION TAG SEQADV 3QIV SER A 0 UNP Q743I2 EXPRESSION TAG SEQADV 3QIV GLY B -3 UNP Q743I2 EXPRESSION TAG SEQADV 3QIV PRO B -2 UNP Q743I2 EXPRESSION TAG SEQADV 3QIV GLY B -1 UNP Q743I2 EXPRESSION TAG SEQADV 3QIV SER B 0 UNP Q743I2 EXPRESSION TAG SEQRES 1 A 253 GLY PRO GLY SER MET ARG PHE GLU ASN LYS VAL GLY ILE SEQRES 2 A 253 VAL THR GLY SER GLY GLY GLY ILE GLY GLN ALA TYR ALA SEQRES 3 A 253 GLU ALA LEU ALA ARG GLU GLY ALA ALA VAL VAL VAL ALA SEQRES 4 A 253 ASP ILE ASN ALA GLU ALA ALA GLU ALA VAL ALA LYS GLN SEQRES 5 A 253 ILE VAL ALA ASP GLY GLY THR ALA ILE SER VAL ALA VAL SEQRES 6 A 253 ASP VAL SER ASP PRO GLU SER ALA LYS ALA MET ALA ASP SEQRES 7 A 253 ARG THR LEU ALA GLU PHE GLY GLY ILE ASP TYR LEU VAL SEQRES 8 A 253 ASN ASN ALA ALA ILE PHE GLY GLY MET LYS LEU ASP PHE SEQRES 9 A 253 LEU LEU THR ILE ASP PRO GLU TYR TYR LYS LYS PHE MET SEQRES 10 A 253 SER VAL ASN LEU ASP GLY ALA LEU TRP CYS THR ARG ALA SEQRES 11 A 253 VAL TYR LYS LYS MET THR LYS ARG GLY GLY GLY ALA ILE SEQRES 12 A 253 VAL ASN GLN SER SER THR ALA ALA TRP LEU TYR SER ASN SEQRES 13 A 253 TYR TYR GLY LEU ALA LYS VAL GLY ILE ASN GLY LEU THR SEQRES 14 A 253 GLN GLN LEU SER ARG GLU LEU GLY GLY ARG ASN ILE ARG SEQRES 15 A 253 ILE ASN ALA ILE ALA PRO GLY PRO ILE ASP THR GLU ALA SEQRES 16 A 253 ASN ARG THR THR THR PRO LYS GLU MET VAL ASP ASP ILE SEQRES 17 A 253 VAL LYS GLY LEU PRO LEU SER ARG MET GLY THR PRO ASP SEQRES 18 A 253 ASP LEU VAL GLY MET CYS LEU PHE LEU LEU SER ASP GLU SEQRES 19 A 253 ALA SER TRP ILE THR GLY GLN ILE PHE ASN VAL ASP GLY SEQRES 20 A 253 GLY GLN ILE ILE ARG SER SEQRES 1 B 253 GLY PRO GLY SER MET ARG PHE GLU ASN LYS VAL GLY ILE SEQRES 2 B 253 VAL THR GLY SER GLY GLY GLY ILE GLY GLN ALA TYR ALA SEQRES 3 B 253 GLU ALA LEU ALA ARG GLU GLY ALA ALA VAL VAL VAL ALA SEQRES 4 B 253 ASP ILE ASN ALA GLU ALA ALA GLU ALA VAL ALA LYS GLN SEQRES 5 B 253 ILE VAL ALA ASP GLY GLY THR ALA ILE SER VAL ALA VAL SEQRES 6 B 253 ASP VAL SER ASP PRO GLU SER ALA LYS ALA MET ALA ASP SEQRES 7 B 253 ARG THR LEU ALA GLU PHE GLY GLY ILE ASP TYR LEU VAL SEQRES 8 B 253 ASN ASN ALA ALA ILE PHE GLY GLY MET LYS LEU ASP PHE SEQRES 9 B 253 LEU LEU THR ILE ASP PRO GLU TYR TYR LYS LYS PHE MET SEQRES 10 B 253 SER VAL ASN LEU ASP GLY ALA LEU TRP CYS THR ARG ALA SEQRES 11 B 253 VAL TYR LYS LYS MET THR LYS ARG GLY GLY GLY ALA ILE SEQRES 12 B 253 VAL ASN GLN SER SER THR ALA ALA TRP LEU TYR SER ASN SEQRES 13 B 253 TYR TYR GLY LEU ALA LYS VAL GLY ILE ASN GLY LEU THR SEQRES 14 B 253 GLN GLN LEU SER ARG GLU LEU GLY GLY ARG ASN ILE ARG SEQRES 15 B 253 ILE ASN ALA ILE ALA PRO GLY PRO ILE ASP THR GLU ALA SEQRES 16 B 253 ASN ARG THR THR THR PRO LYS GLU MET VAL ASP ASP ILE SEQRES 17 B 253 VAL LYS GLY LEU PRO LEU SER ARG MET GLY THR PRO ASP SEQRES 18 B 253 ASP LEU VAL GLY MET CYS LEU PHE LEU LEU SER ASP GLU SEQRES 19 B 253 ALA SER TRP ILE THR GLY GLN ILE PHE ASN VAL ASP GLY SEQRES 20 B 253 GLY GLN ILE ILE ARG SER FORMUL 3 HOH *119(H2 O) HELIX 1 1 GLY A 15 GLU A 28 1 14 HELIX 2 2 ASN A 38 ASP A 52 1 15 HELIX 3 3 ASP A 65 GLY A 81 1 17 HELIX 4 4 GLY A 94 PHE A 100 5 7 HELIX 5 5 ASP A 105 ARG A 134 1 30 HELIX 6 6 ALA A 157 LEU A 172 1 16 HELIX 7 7 ASP A 217 SER A 228 1 12 HELIX 8 8 ASP A 229 SER A 232 5 4 HELIX 9 9 GLY B 15 GLU B 28 1 14 HELIX 10 10 ASN B 38 ASP B 52 1 15 HELIX 11 11 ASP B 65 GLY B 81 1 17 HELIX 12 12 GLY B 95 PHE B 100 5 6 HELIX 13 13 ASP B 105 GLY B 135 1 31 HELIX 14 14 GLY B 160 LEU B 172 1 13 HELIX 15 15 PRO B 216 SER B 228 1 13 HELIX 16 16 ASP B 229 SER B 232 5 4 SHEET 1 A 7 THR A 55 ALA A 60 0 SHEET 2 A 7 ALA A 31 ASP A 36 1 N VAL A 34 O ILE A 57 SHEET 3 A 7 VAL A 7 THR A 11 1 N GLY A 8 O VAL A 33 SHEET 4 A 7 TYR A 85 ASN A 88 1 O VAL A 87 N ILE A 9 SHEET 5 A 7 GLY A 137 GLN A 142 1 O VAL A 140 N ASN A 88 SHEET 6 A 7 ILE A 177 ALA A 183 1 O ASN A 180 N ASN A 141 SHEET 7 A 7 ILE A 238 ASN A 240 1 O PHE A 239 N ALA A 181 SHEET 1 B 7 THR B 55 ALA B 60 0 SHEET 2 B 7 ALA B 31 ASP B 36 1 N VAL B 34 O ILE B 57 SHEET 3 B 7 VAL B 7 THR B 11 1 N GLY B 8 O ALA B 31 SHEET 4 B 7 TYR B 85 ASN B 88 1 O VAL B 87 N ILE B 9 SHEET 5 B 7 GLY B 137 SER B 143 1 O VAL B 140 N ASN B 88 SHEET 6 B 7 ILE B 177 ALA B 183 1 O ILE B 182 N SER B 143 SHEET 7 B 7 ILE B 238 ASN B 240 1 O PHE B 239 N ALA B 183 CRYST1 59.440 90.070 92.255 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016824 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010840 0.00000