HEADER HYDROLASE 28-JAN-11 3QIX TITLE CRYSTAL STRUCTURE OF BONT/A LC WITH ZINC BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN TYPE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGHT CHAIN (UNP RESIDUES 3-424); COMPND 5 SYNONYM: BONT/A, BONTOXILYSIN-A, BOTOX; COMPND 6 EC: 3.4.24.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 441771; SOURCE 4 STRAIN: HALL - SEROTYPE A; SOURCE 5 GENE: BOTA, CBO0806, CLC_0862, NEUROTOXIN LIGHT CHAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS BOTULINUM, BONT, NEUROTOXIN, TOXIN, METALLOPROTEASE, PROTEASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.THOMPSON,G.W.HAN,R.C.STEVENS REVDAT 4 13-SEP-23 3QIX 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3QIX 1 REMARK REVDAT 2 25-MAY-11 3QIX 1 JRNL REVDAT 1 13-APR-11 3QIX 0 JRNL AUTH A.A.THOMPSON,G.S.JIAO,S.KIM,A.THAI,L.CREGAR-HERNANDEZ, JRNL AUTH 2 S.A.MARGOSIAK,A.T.JOHNSON,G.W.HAN,S.O'MALLEY,R.C.STEVENS JRNL TITL STRUCTURAL CHARACTERIZATION OF THREE NOVEL HYDROXAMATE-BASED JRNL TITL 2 ZINC CHELATING INHIBITORS OF THE CLOSTRIDIUM BOTULINUM JRNL TITL 3 SEROTYPE A NEUROTOXIN LIGHT CHAIN METALLOPROTEASE REVEALS A JRNL TITL 4 COMPACT BINDING SITE RESULTING FROM 60/70 LOOP FLEXIBILITY. JRNL REF BIOCHEMISTRY V. 50 4019 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21434688 JRNL DOI 10.1021/BI2001483 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 29450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4465 - 5.3651 1.00 2721 159 0.1980 0.2091 REMARK 3 2 5.3651 - 4.2592 0.99 2698 155 0.1549 0.1818 REMARK 3 3 4.2592 - 3.7211 0.99 2677 156 0.1582 0.2091 REMARK 3 4 3.7211 - 3.3809 0.98 2678 136 0.1772 0.2100 REMARK 3 5 3.3809 - 3.1387 0.96 2606 137 0.1857 0.2323 REMARK 3 6 3.1387 - 2.9536 0.95 2558 119 0.1959 0.2931 REMARK 3 7 2.9536 - 2.8057 0.93 2512 144 0.2035 0.2604 REMARK 3 8 2.8057 - 2.6836 0.92 2513 134 0.2174 0.3028 REMARK 3 9 2.6836 - 2.5803 0.89 2395 121 0.2128 0.2845 REMARK 3 10 2.5803 - 2.4913 0.87 2393 123 0.2252 0.3114 REMARK 3 11 2.4913 - 2.4134 0.81 2210 105 0.2296 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 36.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.01170 REMARK 3 B22 (A**2) : -1.94450 REMARK 3 B33 (A**2) : -4.06720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.59440 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6527 REMARK 3 ANGLE : 1.401 8813 REMARK 3 CHIRALITY : 0.091 959 REMARK 3 PLANARITY : 0.005 1135 REMARK 3 DIHEDRAL : 15.700 2401 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:69) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2919 9.8934 15.5183 REMARK 3 T TENSOR REMARK 3 T11: 0.2762 T22: 0.1884 REMARK 3 T33: 0.1662 T12: 0.0234 REMARK 3 T13: -0.0148 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.6020 L22: 0.7612 REMARK 3 L33: 0.8728 L12: -0.0192 REMARK 3 L13: -0.1825 L23: -0.2309 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.0776 S13: -0.0150 REMARK 3 S21: -0.0927 S22: 0.0263 S23: 0.0026 REMARK 3 S31: 0.1154 S32: -0.0716 S33: 0.0184 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 70:268) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5436 16.9408 24.7895 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.0495 REMARK 3 T33: 0.0643 T12: 0.0134 REMARK 3 T13: -0.0014 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.3409 L22: 1.1053 REMARK 3 L33: 1.2052 L12: 0.2260 REMARK 3 L13: -0.2363 L23: -0.2736 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: 0.0727 S13: 0.0487 REMARK 3 S21: 0.0489 S22: -0.0223 S23: 0.0411 REMARK 3 S31: 0.0427 S32: -0.0220 S33: 0.0044 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 269:420) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8459 22.6176 32.1681 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.1339 REMARK 3 T33: 0.1227 T12: -0.0021 REMARK 3 T13: -0.0038 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.6919 L22: 1.4629 REMARK 3 L33: 1.1823 L12: 0.3036 REMARK 3 L13: -0.1848 L23: -0.1346 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: -0.1233 S13: 0.0808 REMARK 3 S21: 0.3075 S22: -0.1115 S23: -0.0649 REMARK 3 S31: -0.1017 S32: 0.0643 S33: 0.0079 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 2:70) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2351 72.5676 -11.0523 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.1842 REMARK 3 T33: 0.1766 T12: 0.0440 REMARK 3 T13: 0.0719 T23: 0.0666 REMARK 3 L TENSOR REMARK 3 L11: 0.5172 L22: 1.0706 REMARK 3 L33: 0.7778 L12: 0.0222 REMARK 3 L13: 0.2412 L23: 0.4174 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.1520 S13: 0.0728 REMARK 3 S21: -0.1932 S22: -0.0430 S23: 0.0166 REMARK 3 S31: -0.3153 S32: 0.0271 S33: -0.0552 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 71:268) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9671 64.4985 -2.1495 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.1448 REMARK 3 T33: 0.1311 T12: 0.0109 REMARK 3 T13: 0.0552 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.3572 L22: 1.4053 REMARK 3 L33: 1.3896 L12: 0.2182 REMARK 3 L13: 0.4930 L23: 0.7808 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.1005 S13: -0.0511 REMARK 3 S21: 0.0096 S22: 0.0422 S23: -0.1093 REMARK 3 S31: -0.1212 S32: 0.0005 S33: -0.1109 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 269:419) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6250 58.5042 5.2560 REMARK 3 T TENSOR REMARK 3 T11: 0.2188 T22: 0.1621 REMARK 3 T33: 0.1338 T12: -0.0103 REMARK 3 T13: 0.0502 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.0877 L22: 2.2196 REMARK 3 L33: 1.6252 L12: 0.3712 REMARK 3 L13: 0.7451 L23: 0.8974 REMARK 3 S TENSOR REMARK 3 S11: 0.1563 S12: -0.0423 S13: -0.1250 REMARK 3 S21: 0.4958 S22: -0.0115 S23: 0.0036 REMARK 3 S31: 0.1962 S32: -0.2027 S33: -0.0849 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.044 REMARK 200 MONOCHROMATOR : 1: DOUBLE CRYSTAL 2: DOUBLE REMARK 200 MULTILAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG6000, 5% GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 96.87350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 27 REMARK 465 GLY A 57 REMARK 465 LEU A 200 REMARK 465 GLU A 201 REMARK 465 VAL A 202 REMARK 465 ASP A 203 REMARK 465 THR A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 LEU A 207 REMARK 465 LEU A 208 REMARK 465 GLY A 209 REMARK 465 ALA A 210 REMARK 465 THR A 247 REMARK 465 ASN A 248 REMARK 465 ALA A 249 REMARK 465 TYR A 250 REMARK 465 TYR A 251 REMARK 465 GLU A 252 REMARK 465 MET A 253 REMARK 465 SER A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 GLY A 421 REMARK 465 LEU A 422 REMARK 465 PHE A 423 REMARK 465 GLU A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 MET B 1 REMARK 465 ALA B 27 REMARK 465 GLU B 55 REMARK 465 GLU B 56 REMARK 465 GLY B 57 REMARK 465 VAL B 68 REMARK 465 PRO B 69 REMARK 465 SER B 199 REMARK 465 LEU B 200 REMARK 465 GLU B 201 REMARK 465 VAL B 202 REMARK 465 ASP B 203 REMARK 465 THR B 204 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 LEU B 207 REMARK 465 LEU B 208 REMARK 465 GLY B 209 REMARK 465 ALA B 210 REMARK 465 GLY B 211 REMARK 465 ASN B 246 REMARK 465 THR B 247 REMARK 465 ASN B 248 REMARK 465 ALA B 249 REMARK 465 TYR B 250 REMARK 465 TYR B 251 REMARK 465 GLU B 252 REMARK 465 MET B 253 REMARK 465 SER B 254 REMARK 465 GLY B 255 REMARK 465 LEU B 256 REMARK 465 ASN B 368 REMARK 465 PHE B 369 REMARK 465 ASP B 370 REMARK 465 THR B 420 REMARK 465 GLY B 421 REMARK 465 LEU B 422 REMARK 465 PHE B 423 REMARK 465 GLU B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 -11.06 -142.46 REMARK 500 LYS A 41 -5.07 71.29 REMARK 500 ASN A 53 75.42 -114.09 REMARK 500 GLU A 55 35.50 -96.33 REMARK 500 ASP A 74 93.30 -163.64 REMARK 500 SER A 157 -152.14 -87.37 REMARK 500 GLU A 171 -134.06 41.51 REMARK 500 ASN A 174 77.79 -101.42 REMARK 500 ASN A 238 125.93 -37.22 REMARK 500 LYS A 371 52.48 -99.97 REMARK 500 ASN A 409 53.20 -99.62 REMARK 500 LYS B 41 -5.28 70.98 REMARK 500 ASP B 74 105.13 -166.76 REMARK 500 SER B 157 -153.58 -76.27 REMARK 500 VAL B 172 -44.43 -138.30 REMARK 500 ASN B 238 121.54 -39.45 REMARK 500 PRO B 239 -8.62 -59.82 REMARK 500 ASN B 400 32.22 39.38 REMARK 500 ASN B 409 45.18 -90.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 HIS A 227 NE2 104.0 REMARK 620 3 GLU A 262 OE1 93.3 84.0 REMARK 620 4 GLU A 262 OE2 125.9 114.3 56.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 223 NE2 REMARK 620 2 HIS B 227 NE2 86.3 REMARK 620 3 GLU B 262 OE1 83.8 86.6 REMARK 620 4 GLU B 262 OE2 138.0 81.0 55.8 REMARK 620 5 HOH B 607 O 123.9 123.8 136.7 95.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QIY RELATED DB: PDB REMARK 900 RELATED ID: 3QIZ RELATED DB: PDB REMARK 900 RELATED ID: 3QJ0 RELATED DB: PDB DBREF 3QIX A 3 424 UNP A5HZZ9 BXA1_CLOBH 3 424 DBREF 3QIX B 3 424 UNP A5HZZ9 BXA1_CLOBH 3 424 SEQADV 3QIX MET A 1 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX GLY A 2 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS A 425 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS A 426 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS A 427 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS A 428 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS A 429 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS A 430 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX MET B 1 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX GLY B 2 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS B 425 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS B 426 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS B 427 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS B 428 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS B 429 UNP A5HZZ9 EXPRESSION TAG SEQADV 3QIX HIS B 430 UNP A5HZZ9 EXPRESSION TAG SEQRES 1 A 430 MET GLY PHE VAL ASN LYS GLN PHE ASN TYR LYS ASP PRO SEQRES 2 A 430 VAL ASN GLY VAL ASP ILE ALA TYR ILE LYS ILE PRO ASN SEQRES 3 A 430 ALA GLY GLN MET GLN PRO VAL LYS ALA PHE LYS ILE HIS SEQRES 4 A 430 ASN LYS ILE TRP VAL ILE PRO GLU ARG ASP THR PHE THR SEQRES 5 A 430 ASN PRO GLU GLU GLY ASP LEU ASN PRO PRO PRO GLU ALA SEQRES 6 A 430 LYS GLN VAL PRO VAL SER TYR TYR ASP SER THR TYR LEU SEQRES 7 A 430 SER THR ASP ASN GLU LYS ASP ASN TYR LEU LYS GLY VAL SEQRES 8 A 430 THR LYS LEU PHE GLU ARG ILE TYR SER THR ASP LEU GLY SEQRES 9 A 430 ARG MET LEU LEU THR SER ILE VAL ARG GLY ILE PRO PHE SEQRES 10 A 430 TRP GLY GLY SER THR ILE ASP THR GLU LEU LYS VAL ILE SEQRES 11 A 430 ASP THR ASN CYS ILE ASN VAL ILE GLN PRO ASP GLY SER SEQRES 12 A 430 TYR ARG SER GLU GLU LEU ASN LEU VAL ILE ILE GLY PRO SEQRES 13 A 430 SER ALA ASP ILE ILE GLN PHE GLU CYS LYS SER PHE GLY SEQRES 14 A 430 HIS GLU VAL LEU ASN LEU THR ARG ASN GLY TYR GLY SER SEQRES 15 A 430 THR GLN TYR ILE ARG PHE SER PRO ASP PHE THR PHE GLY SEQRES 16 A 430 PHE GLU GLU SER LEU GLU VAL ASP THR ASN PRO LEU LEU SEQRES 17 A 430 GLY ALA GLY LYS PHE ALA THR ASP PRO ALA VAL THR LEU SEQRES 18 A 430 ALA HIS GLU LEU ILE HIS ALA GLY HIS ARG LEU TYR GLY SEQRES 19 A 430 ILE ALA ILE ASN PRO ASN ARG VAL PHE LYS VAL ASN THR SEQRES 20 A 430 ASN ALA TYR TYR GLU MET SER GLY LEU GLU VAL SER PHE SEQRES 21 A 430 GLU GLU LEU ARG THR PHE GLY GLY HIS ASP ALA LYS PHE SEQRES 22 A 430 ILE ASP SER LEU GLN GLU ASN GLU PHE ARG LEU TYR TYR SEQRES 23 A 430 TYR ASN LYS PHE LYS ASP ILE ALA SER THR LEU ASN LYS SEQRES 24 A 430 ALA LYS SER ILE VAL GLY THR THR ALA SER LEU GLN TYR SEQRES 25 A 430 MET LYS ASN VAL PHE LYS GLU LYS TYR LEU LEU SER GLU SEQRES 26 A 430 ASP THR SER GLY LYS PHE SER VAL ASP LYS LEU LYS PHE SEQRES 27 A 430 ASP LYS LEU TYR LYS MET LEU THR GLU ILE TYR THR GLU SEQRES 28 A 430 ASP ASN PHE VAL LYS PHE PHE LYS VAL LEU ASN ARG LYS SEQRES 29 A 430 THR TYR LEU ASN PHE ASP LYS ALA VAL PHE LYS ILE ASN SEQRES 30 A 430 ILE VAL PRO LYS VAL ASN TYR THR ILE TYR ASP GLY PHE SEQRES 31 A 430 ASN LEU ARG ASN THR ASN LEU ALA ALA ASN PHE ASN GLY SEQRES 32 A 430 GLN ASN THR GLU ILE ASN ASN MET ASN PHE THR LYS LEU SEQRES 33 A 430 LYS ASN PHE THR GLY LEU PHE GLU HIS HIS HIS HIS HIS SEQRES 34 A 430 HIS SEQRES 1 B 430 MET GLY PHE VAL ASN LYS GLN PHE ASN TYR LYS ASP PRO SEQRES 2 B 430 VAL ASN GLY VAL ASP ILE ALA TYR ILE LYS ILE PRO ASN SEQRES 3 B 430 ALA GLY GLN MET GLN PRO VAL LYS ALA PHE LYS ILE HIS SEQRES 4 B 430 ASN LYS ILE TRP VAL ILE PRO GLU ARG ASP THR PHE THR SEQRES 5 B 430 ASN PRO GLU GLU GLY ASP LEU ASN PRO PRO PRO GLU ALA SEQRES 6 B 430 LYS GLN VAL PRO VAL SER TYR TYR ASP SER THR TYR LEU SEQRES 7 B 430 SER THR ASP ASN GLU LYS ASP ASN TYR LEU LYS GLY VAL SEQRES 8 B 430 THR LYS LEU PHE GLU ARG ILE TYR SER THR ASP LEU GLY SEQRES 9 B 430 ARG MET LEU LEU THR SER ILE VAL ARG GLY ILE PRO PHE SEQRES 10 B 430 TRP GLY GLY SER THR ILE ASP THR GLU LEU LYS VAL ILE SEQRES 11 B 430 ASP THR ASN CYS ILE ASN VAL ILE GLN PRO ASP GLY SER SEQRES 12 B 430 TYR ARG SER GLU GLU LEU ASN LEU VAL ILE ILE GLY PRO SEQRES 13 B 430 SER ALA ASP ILE ILE GLN PHE GLU CYS LYS SER PHE GLY SEQRES 14 B 430 HIS GLU VAL LEU ASN LEU THR ARG ASN GLY TYR GLY SER SEQRES 15 B 430 THR GLN TYR ILE ARG PHE SER PRO ASP PHE THR PHE GLY SEQRES 16 B 430 PHE GLU GLU SER LEU GLU VAL ASP THR ASN PRO LEU LEU SEQRES 17 B 430 GLY ALA GLY LYS PHE ALA THR ASP PRO ALA VAL THR LEU SEQRES 18 B 430 ALA HIS GLU LEU ILE HIS ALA GLY HIS ARG LEU TYR GLY SEQRES 19 B 430 ILE ALA ILE ASN PRO ASN ARG VAL PHE LYS VAL ASN THR SEQRES 20 B 430 ASN ALA TYR TYR GLU MET SER GLY LEU GLU VAL SER PHE SEQRES 21 B 430 GLU GLU LEU ARG THR PHE GLY GLY HIS ASP ALA LYS PHE SEQRES 22 B 430 ILE ASP SER LEU GLN GLU ASN GLU PHE ARG LEU TYR TYR SEQRES 23 B 430 TYR ASN LYS PHE LYS ASP ILE ALA SER THR LEU ASN LYS SEQRES 24 B 430 ALA LYS SER ILE VAL GLY THR THR ALA SER LEU GLN TYR SEQRES 25 B 430 MET LYS ASN VAL PHE LYS GLU LYS TYR LEU LEU SER GLU SEQRES 26 B 430 ASP THR SER GLY LYS PHE SER VAL ASP LYS LEU LYS PHE SEQRES 27 B 430 ASP LYS LEU TYR LYS MET LEU THR GLU ILE TYR THR GLU SEQRES 28 B 430 ASP ASN PHE VAL LYS PHE PHE LYS VAL LEU ASN ARG LYS SEQRES 29 B 430 THR TYR LEU ASN PHE ASP LYS ALA VAL PHE LYS ILE ASN SEQRES 30 B 430 ILE VAL PRO LYS VAL ASN TYR THR ILE TYR ASP GLY PHE SEQRES 31 B 430 ASN LEU ARG ASN THR ASN LEU ALA ALA ASN PHE ASN GLY SEQRES 32 B 430 GLN ASN THR GLU ILE ASN ASN MET ASN PHE THR LYS LEU SEQRES 33 B 430 LYS ASN PHE THR GLY LEU PHE GLU HIS HIS HIS HIS HIS SEQRES 34 B 430 HIS HET EDO A 700 4 HET ZN A1001 1 HET ZN B1002 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *122(H2 O) HELIX 1 1 THR A 80 SER A 100 1 21 HELIX 2 2 THR A 101 GLY A 114 1 14 HELIX 3 3 ILE A 130 THR A 132 5 3 HELIX 4 4 ASP A 216 TYR A 233 1 18 HELIX 5 5 PHE A 260 GLY A 267 1 8 HELIX 6 6 GLY A 268 PHE A 273 5 6 HELIX 7 7 ASP A 275 ALA A 300 1 26 HELIX 8 8 SER A 309 LEU A 322 1 14 HELIX 9 9 ASP A 334 GLU A 347 1 14 HELIX 10 10 THR A 350 LYS A 359 1 10 HELIX 11 11 THR A 395 ALA A 399 5 5 HELIX 12 12 PHE A 401 ASN A 405 5 5 HELIX 13 13 ASN A 409 PHE A 413 5 5 HELIX 14 14 THR B 80 SER B 100 1 21 HELIX 15 15 THR B 101 GLY B 114 1 14 HELIX 16 16 ILE B 130 THR B 132 5 3 HELIX 17 17 ASP B 216 TYR B 233 1 18 HELIX 18 18 PHE B 260 GLY B 267 1 8 HELIX 19 19 ASP B 270 ILE B 274 5 5 HELIX 20 20 ASP B 275 ALA B 300 1 26 HELIX 21 21 SER B 309 TYR B 321 1 13 HELIX 22 22 ASP B 334 ILE B 348 1 15 HELIX 23 23 THR B 350 LYS B 359 1 10 HELIX 24 24 THR B 395 ALA B 399 5 5 HELIX 25 25 ASN B 409 PHE B 413 5 5 SHEET 1 A 8 TYR A 144 GLU A 148 0 SHEET 2 A 8 CYS A 134 ILE A 138 -1 N VAL A 137 O ARG A 145 SHEET 3 A 8 ILE A 19 LYS A 23 -1 N TYR A 21 O ILE A 138 SHEET 4 A 8 VAL A 33 HIS A 39 -1 O ALA A 35 N ALA A 20 SHEET 5 A 8 ILE A 42 ARG A 48 -1 O VAL A 44 N PHE A 36 SHEET 6 A 8 LEU A 151 GLY A 155 1 O ILE A 153 N ILE A 45 SHEET 7 A 8 GLN A 184 ARG A 187 1 O ILE A 186 N VAL A 152 SHEET 8 A 8 GLU A 164 LYS A 166 -1 N LYS A 166 O TYR A 185 SHEET 1 B 2 GLU A 126 LEU A 127 0 SHEET 2 B 2 SER A 302 ILE A 303 1 O SER A 302 N LEU A 127 SHEET 1 C 4 LYS A 212 ALA A 214 0 SHEET 2 C 4 PHE A 192 GLU A 197 -1 N PHE A 196 O PHE A 213 SHEET 3 C 4 VAL A 373 LYS A 375 -1 O PHE A 374 N THR A 193 SHEET 4 C 4 THR A 414 LEU A 416 -1 O LEU A 416 N VAL A 373 SHEET 1 D 2 VAL A 242 PHE A 243 0 SHEET 2 D 2 VAL A 258 SER A 259 -1 O VAL A 258 N PHE A 243 SHEET 1 E 2 LEU A 323 GLU A 325 0 SHEET 2 E 2 PHE A 331 VAL A 333 -1 O SER A 332 N SER A 324 SHEET 1 F 8 TYR B 144 GLU B 148 0 SHEET 2 F 8 CYS B 134 ILE B 138 -1 N VAL B 137 O ARG B 145 SHEET 3 F 8 ILE B 19 LYS B 23 -1 N LYS B 23 O ASN B 136 SHEET 4 F 8 VAL B 33 HIS B 39 -1 O VAL B 33 N ILE B 22 SHEET 5 F 8 ILE B 42 ARG B 48 -1 O VAL B 44 N PHE B 36 SHEET 6 F 8 LEU B 151 GLY B 155 1 O ILE B 153 N ILE B 45 SHEET 7 F 8 GLN B 184 ARG B 187 1 O ILE B 186 N VAL B 152 SHEET 8 F 8 GLU B 164 LYS B 166 -1 N LYS B 166 O TYR B 185 SHEET 1 G 2 GLU B 126 LEU B 127 0 SHEET 2 G 2 SER B 302 ILE B 303 1 O SER B 302 N LEU B 127 SHEET 1 H 4 PHE B 213 ALA B 214 0 SHEET 2 H 4 PHE B 192 PHE B 196 -1 N PHE B 196 O PHE B 213 SHEET 3 H 4 VAL B 373 LYS B 375 -1 O PHE B 374 N THR B 193 SHEET 4 H 4 THR B 414 LEU B 416 -1 O LEU B 416 N VAL B 373 SHEET 1 I 2 VAL B 242 PHE B 243 0 SHEET 2 I 2 VAL B 258 SER B 259 -1 O VAL B 258 N PHE B 243 SHEET 1 J 2 SER B 324 GLU B 325 0 SHEET 2 J 2 PHE B 331 SER B 332 -1 O SER B 332 N SER B 324 LINK NE2 HIS A 223 ZN ZN A1001 1555 1555 2.05 LINK NE2 HIS A 227 ZN ZN A1001 1555 1555 2.14 LINK OE1 GLU A 262 ZN ZN A1001 1555 1555 2.00 LINK OE2 GLU A 262 ZN ZN A1001 1555 1555 2.49 LINK NE2 HIS B 223 ZN ZN B1002 1555 1555 2.12 LINK NE2 HIS B 227 ZN ZN B1002 1555 1555 2.17 LINK OE1 GLU B 262 ZN ZN B1002 1555 1555 2.00 LINK OE2 GLU B 262 ZN ZN B1002 1555 1555 2.56 LINK O HOH B 607 ZN ZN B1002 1555 1555 2.60 CISPEP 1 VAL A 68 PRO A 69 0 2.53 SITE 1 AC1 3 LYS A 375 MET A 411 THR A 414 SITE 1 AC2 4 HIS A 223 HIS A 227 GLU A 262 HOH A 606 SITE 1 AC3 4 HIS B 223 HIS B 227 GLU B 262 HOH B 607 CRYST1 38.808 193.747 56.003 90.00 96.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025768 0.000000 0.002762 0.00000 SCALE2 0.000000 0.005161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017959 0.00000