HEADER HYDROLASE 31-JAN-11 3QJY TITLE CRYSTAL STRUCTURE OF P-LOOP G234A MUTANT OF SUBUNIT A OF THE A1AO ATP TITLE 2 SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE ATP SYNTHASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC SUBUNIT A (UNP RESIDUES 1-240, 617-964); COMPND 5 SYNONYM: A-TYPE ATP SYNTHASE CATALYTIC SUBUNIT A, V-ATPASE SUBUNIT A; COMPND 6 EC: 3.6.3.14; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: ATPA, PH1975; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+)-HIS6 KEYWDS HYDROLASE, ATP BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.RAGUNATHAN,M.S.S.MANIMEKALAI,J.JEYAKANTHAN,G.GRUBER REVDAT 5 01-NOV-23 3QJY 1 REMARK SEQADV REVDAT 4 08-NOV-17 3QJY 1 REMARK REVDAT 3 23-AUG-17 3QJY 1 SOURCE REMARK REVDAT 2 26-JUN-13 3QJY 1 JRNL REVDAT 1 05-OCT-11 3QJY 0 JRNL AUTH R.PRIYA,A.KUMAR,M.S.MANIMEKALAI,G.GRUBER JRNL TITL CONSERVED GLYCINE RESIDUES IN THE P-LOOP OF ATP SYNTHASES JRNL TITL 2 FORM A DOORFRAME FOR NUCLEOTIDE ENTRANCE. JRNL REF J.MOL.BIOL. V. 413 657 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21925186 JRNL DOI 10.1016/J.JMB.2011.08.045 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.KUMAR,M.S.S.MANIMEKALAI,A.M.BALAKRISHNA,J.JEYAKANTHAN, REMARK 1 AUTH 2 G.GRUBER REMARK 1 TITL NUCLEOTIDE BINDING STATES OF SUBUNIT A OF THE A-ATP SYNTHASE REMARK 1 TITL 2 AND THE IMPLICATION OF P-LOOP SWITCH IN EVOLUTION. REMARK 1 REF J.MOL.BIOL. V. 396 301 2010 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 19944110 REMARK 1 DOI 10.1016/J.JMB.2009.11.046 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.KUMAR,M.S.S.MANIMEKALAI,A.M.BALAKRISHNA,R.PRIYA, REMARK 1 AUTH 2 G.BIUKOVIC,J.JEYAKANTHAN,G.GRUBER REMARK 1 TITL THE CRITICAL ROLES OF RESIDUES P235 AND F236 OF SUBUNIT A OF REMARK 1 TITL 2 THE MOTOR PROTEIN A-ATP SYNTHASE IN P-LOOP FORMATION AND REMARK 1 TITL 3 NUCLEOTIDE BINDING. REMARK 1 REF J.MOL.BIOL. V. 401 892 2010 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 20615420 REMARK 1 DOI 10.1016/J.JMB.2010.06.070 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.MAEGAWA,H.MORITA,D.IYAGUCHI,M.YAO,N.WATANABE,I.TANAKA REMARK 1 TITL STRUCTURE OF THE CATALYTIC NUCLEOTIDE-BINDING SUBUNIT A OF REMARK 1 TITL 2 A-TYPE ATP SYNTHASE FROM PYROCOCCUS HORIKOSHII REVEALS A REMARK 1 TITL 3 NOVEL DOMAIN RELATED TO THE PERIPHERAL STALK. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.C V. 62 483 2006 REMARK 1 REFN ISSN 0108-2701 REMARK 1 PMID 16627940 REMARK 1 DOI 10.1107/S0907444906006329 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2569 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4387 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.293 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.642 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4538 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6150 ; 1.095 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 560 ; 5.740 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;35.421 ;23.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;17.689 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;20.262 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 681 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3399 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2791 ; 0.472 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4523 ; 0.877 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1747 ; 1.018 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1624 ; 1.771 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 587 REMARK 3 ORIGIN FOR THE GROUP (A): -35.7108 -22.8195 19.9843 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.1729 REMARK 3 T33: 0.0405 T12: 0.1385 REMARK 3 T13: -0.0026 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.4610 L22: 1.9672 REMARK 3 L33: 0.5861 L12: -1.3498 REMARK 3 L13: 0.4193 L23: -0.4419 REMARK 3 S TENSOR REMARK 3 S11: -0.3943 S12: -0.2264 S13: 0.0907 REMARK 3 S21: 0.4211 S22: 0.3940 S23: -0.0587 REMARK 3 S31: 0.0115 S32: 0.1148 S33: 0.0003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3QJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% (V/V) MPD, 2MM MGADP, 0.1M ACETATE REMARK 280 (PH 4.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.89400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.09100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.09100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.34100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.09100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.09100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.44700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.09100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.09100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.34100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.09100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.09100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.44700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.89400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 6 REMARK 465 ILE A 7 REMARK 465 ILE A 8 REMARK 465 ARG A 9 REMARK 465 VAL A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 ASP A 18 REMARK 465 GLY A 19 REMARK 465 MET A 20 REMARK 465 LYS A 21 REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 LYS A 24 REMARK 465 MET A 25 REMARK 465 GLU A 348 REMARK 465 GLU A 349 REMARK 465 MET A 350 REMARK 465 PRO A 351 REMARK 465 GLY A 352 REMARK 465 GLU A 353 REMARK 465 ALA A 588 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 199 OD2 ASP A 321 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 27 -155.55 62.08 REMARK 500 GLU A 33 -26.71 -169.10 REMARK 500 GLU A 39 -48.71 -141.05 REMARK 500 ILE A 41 -150.20 -76.76 REMARK 500 TYR A 53 -38.22 -133.59 REMARK 500 PRO A 61 106.02 -48.54 REMARK 500 GLU A 63 -158.84 -112.31 REMARK 500 PRO A 64 96.32 -64.95 REMARK 500 THR A 82 -16.21 73.66 REMARK 500 GLU A 93 -118.98 -98.46 REMARK 500 VAL A 94 122.53 -36.76 REMARK 500 LYS A 98 -150.76 -117.21 REMARK 500 PRO A 140 98.20 -64.76 REMARK 500 GLU A 208 -44.12 -153.94 REMARK 500 SER A 332 37.18 -151.68 REMARK 500 PRO A 402 -1.18 -57.32 REMARK 500 VAL A 403 -33.42 -140.25 REMARK 500 VAL A 404 -110.07 -71.89 REMARK 500 GLN A 405 32.49 -76.96 REMARK 500 ALA A 429 47.08 -85.60 REMARK 500 ILE A 451 -57.63 -120.63 REMARK 500 TYR A 502 -58.89 -129.56 REMARK 500 TYR A 586 -102.28 -113.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 589 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 590 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 591 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 592 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 593 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 594 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 595 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VDZ RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: 3I72 RELATED DB: PDB REMARK 900 WILD TYPE COMPLEXED WITH SULPHATE REMARK 900 RELATED ID: 3I73 RELATED DB: PDB REMARK 900 WILD TYPE COMPLEXED WITH ADP REMARK 900 RELATED ID: 3I4L RELATED DB: PDB REMARK 900 WILD TYPE COMPLEXED WITH AMP-PNP REMARK 900 RELATED ID: 3IKJ RELATED DB: PDB REMARK 900 S238 MUTANT REMARK 900 RELATED ID: 3M4Y RELATED DB: PDB REMARK 900 P235A MUTANT REMARK 900 RELATED ID: 3MFY RELATED DB: PDB REMARK 900 F236A MUTANT REMARK 900 RELATED ID: 3QIA RELATED DB: PDB REMARK 900 G237A MUTANT DBREF 3QJY A 1 240 UNP O57728 VATA_PYRHO 1 240 DBREF 3QJY A 241 588 UNP O57728 VATA_PYRHO 617 964 SEQADV 3QJY ALA A 234 UNP O57728 GLY 234 ENGINEERED MUTATION SEQRES 1 A 588 MET VAL ALA LYS GLY ARG ILE ILE ARG VAL THR GLY PRO SEQRES 2 A 588 LEU VAL VAL ALA ASP GLY MET LYS GLY ALA LYS MET TYR SEQRES 3 A 588 GLU VAL VAL ARG VAL GLY GLU LEU GLY LEU ILE GLY GLU SEQRES 4 A 588 ILE ILE ARG LEU GLU GLY ASP LYS ALA VAL ILE GLN VAL SEQRES 5 A 588 TYR GLU GLU THR ALA GLY VAL ARG PRO GLY GLU PRO VAL SEQRES 6 A 588 VAL GLY THR GLY ALA SER LEU SER VAL GLU LEU GLY PRO SEQRES 7 A 588 GLY LEU LEU THR SER ILE TYR ASP GLY ILE GLN ARG PRO SEQRES 8 A 588 LEU GLU VAL ILE ARG GLU LYS THR GLY ASP PHE ILE ALA SEQRES 9 A 588 ARG GLY VAL THR ALA PRO ALA LEU PRO ARG ASP LYS LYS SEQRES 10 A 588 TRP HIS PHE ILE PRO LYS ALA LYS VAL GLY ASP LYS VAL SEQRES 11 A 588 VAL GLY GLY ASP ILE ILE GLY GLU VAL PRO GLU THR SER SEQRES 12 A 588 ILE ILE VAL HIS LYS ILE MET VAL PRO PRO GLY ILE GLU SEQRES 13 A 588 GLY GLU ILE VAL GLU ILE ALA GLU GLU GLY ASP TYR THR SEQRES 14 A 588 ILE GLU GLU VAL ILE ALA LYS VAL LYS THR PRO SER GLY SEQRES 15 A 588 GLU ILE LYS GLU LEU LYS MET TYR GLN ARG TRP PRO VAL SEQRES 16 A 588 ARG VAL LYS ARG PRO TYR LYS GLU LYS LEU PRO PRO GLU SEQRES 17 A 588 VAL PRO LEU ILE THR GLY GLN ARG VAL ILE ASP THR PHE SEQRES 18 A 588 PHE PRO GLN ALA LYS GLY GLY THR ALA ALA ILE PRO ALA SEQRES 19 A 588 PRO PHE GLY SER GLY LYS THR VAL THR GLN HIS GLN LEU SEQRES 20 A 588 ALA LYS TRP SER ASP ALA GLN VAL VAL ILE TYR ILE GLY SEQRES 21 A 588 CYS GLY GLU ARG GLY ASN GLU MET THR ASP VAL LEU GLU SEQRES 22 A 588 GLU PHE PRO LYS LEU LYS ASP PRO LYS THR GLY LYS PRO SEQRES 23 A 588 LEU MET GLU ARG THR VAL LEU ILE ALA ASN THR SER ASN SEQRES 24 A 588 MET PRO VAL ALA ALA ARG GLU ALA SER ILE TYR THR GLY SEQRES 25 A 588 ILE THR ILE ALA GLU TYR PHE ARG ASP MET GLY TYR ASP SEQRES 26 A 588 VAL ALA LEU MET ALA ASP SER THR SER ARG TRP ALA GLU SEQRES 27 A 588 ALA LEU ARG GLU ILE SER GLY ARG LEU GLU GLU MET PRO SEQRES 28 A 588 GLY GLU GLU GLY TYR PRO ALA TYR LEU ALA SER LYS LEU SEQRES 29 A 588 ALA GLU PHE TYR GLU ARG ALA GLY ARG VAL VAL THR LEU SEQRES 30 A 588 GLY SER ASP TYR ARG VAL GLY SER VAL SER VAL ILE GLY SEQRES 31 A 588 ALA VAL SER PRO PRO GLY GLY ASP PHE SER GLU PRO VAL SEQRES 32 A 588 VAL GLN ASN THR LEU ARG VAL VAL LYS VAL PHE TRP ALA SEQRES 33 A 588 LEU ASP ALA ASP LEU ALA ARG ARG ARG HIS PHE PRO ALA SEQRES 34 A 588 ILE ASN TRP LEU THR SER TYR SER LEU TYR VAL ASP ALA SEQRES 35 A 588 VAL LYS ASP TRP TRP HIS LYS ASN ILE ASP PRO GLU TRP SEQRES 36 A 588 LYS ALA MET ARG ASP LYS ALA MET ALA LEU LEU GLN LYS SEQRES 37 A 588 GLU SER GLU LEU GLN GLU ILE VAL ARG ILE VAL GLY PRO SEQRES 38 A 588 ASP ALA LEU PRO GLU ARG GLU ARG ALA ILE LEU LEU VAL SEQRES 39 A 588 ALA ARG MET LEU ARG GLU ASP TYR LEU GLN GLN ASP ALA SEQRES 40 A 588 PHE ASP GLU VAL ASP THR TYR CYS PRO PRO GLU LYS GLN SEQRES 41 A 588 VAL THR MET MET ARG VAL LEU LEU ASN PHE TYR ASP LYS SEQRES 42 A 588 THR MET GLU ALA ILE ASN ARG GLY VAL PRO LEU GLU GLU SEQRES 43 A 588 ILE ALA LYS LEU PRO VAL ARG GLU GLU ILE GLY ARG MET SEQRES 44 A 588 LYS PHE GLU ARG ASP VAL SER LYS ILE ARG SER LEU ILE SEQRES 45 A 588 ASP LYS THR ASN GLU GLN PHE GLU GLU LEU PHE LYS LYS SEQRES 46 A 588 TYR GLY ALA HET MPD A 589 8 HET ACY A 590 4 HET TRS A 591 8 HET MPD A 592 8 HET MPD A 593 8 HET ACY A 594 4 HET ACY A 595 4 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACY ACETIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 MPD 3(C6 H14 O2) FORMUL 3 ACY 3(C2 H4 O2) FORMUL 4 TRS C4 H12 N O3 1+ FORMUL 9 HOH *201(H2 O) HELIX 1 1 GLN A 215 PHE A 222 1 8 HELIX 2 2 GLY A 239 SER A 251 1 13 HELIX 3 3 ASN A 266 PHE A 275 1 10 HELIX 4 4 PRO A 276 LEU A 278 5 3 HELIX 5 5 PRO A 286 GLU A 289 5 4 HELIX 6 6 VAL A 302 ALA A 307 1 6 HELIX 7 7 ALA A 307 MET A 322 1 16 HELIX 8 8 SER A 332 ALA A 337 1 6 HELIX 9 9 ALA A 358 GLU A 369 1 12 HELIX 10 10 ASP A 418 ARG A 424 1 7 HELIX 11 11 TYR A 439 ILE A 451 1 13 HELIX 12 12 GLU A 454 GLY A 480 1 27 HELIX 13 13 PRO A 485 TYR A 502 1 18 HELIX 14 14 PRO A 516 ASN A 539 1 24 HELIX 15 15 PRO A 543 LYS A 549 1 7 HELIX 16 16 LEU A 550 MET A 559 1 10 HELIX 17 17 LYS A 560 GLU A 562 5 3 HELIX 18 18 ASP A 564 SER A 570 1 7 HELIX 19 19 SER A 570 TYR A 586 1 17 SHEET 1 A 2 GLU A 44 ASP A 46 0 SHEET 2 A 2 VAL A 49 GLN A 51 -1 O GLN A 51 N GLU A 44 SHEET 1 B 2 SER A 73 LEU A 76 0 SHEET 2 B 2 GLN A 191 PRO A 194 -1 O GLN A 191 N LEU A 76 SHEET 1 C 7 ILE A 84 TYR A 85 0 SHEET 2 C 7 THR A 291 ALA A 295 1 O ALA A 295 N TYR A 85 SHEET 3 C 7 VAL A 255 GLY A 260 1 N TYR A 258 O ILE A 294 SHEET 4 C 7 ASP A 325 ASP A 331 1 O ASP A 331 N ILE A 259 SHEET 5 C 7 VAL A 383 VAL A 392 1 O SER A 387 N LEU A 328 SHEET 6 C 7 GLY A 372 VAL A 375 -1 N VAL A 374 O GLY A 384 SHEET 7 C 7 GLU A 203 LEU A 205 -1 N GLU A 203 O VAL A 375 SHEET 1 D 8 ILE A 84 TYR A 85 0 SHEET 2 D 8 THR A 291 ALA A 295 1 O ALA A 295 N TYR A 85 SHEET 3 D 8 VAL A 255 GLY A 260 1 N TYR A 258 O ILE A 294 SHEET 4 D 8 ASP A 325 ASP A 331 1 O ASP A 331 N ILE A 259 SHEET 5 D 8 VAL A 383 VAL A 392 1 O SER A 387 N LEU A 328 SHEET 6 D 8 THR A 229 PRO A 233 1 N ALA A 230 O GLY A 390 SHEET 7 D 8 VAL A 413 PHE A 414 1 O VAL A 413 N ALA A 231 SHEET 8 D 8 TYR A 436 SER A 437 -1 O TYR A 436 N PHE A 414 SHEET 1 E 4 VAL A 146 MET A 150 0 SHEET 2 E 4 ILE A 135 PRO A 140 -1 N VAL A 139 O HIS A 147 SHEET 3 E 4 TRP A 118 PRO A 122 -1 N ILE A 121 O GLU A 138 SHEET 4 E 4 GLY A 166 TYR A 168 -1 O TYR A 168 N TRP A 118 SHEET 1 F 4 LYS A 129 VAL A 130 0 SHEET 2 F 4 GLY A 157 ILE A 162 -1 O GLY A 157 N VAL A 130 SHEET 3 F 4 ALA A 175 LYS A 178 -1 O LYS A 178 N GLU A 158 SHEET 4 F 4 ILE A 184 LEU A 187 -1 O LYS A 185 N VAL A 177 SHEET 1 G 2 PRO A 210 LEU A 211 0 SHEET 2 G 2 GLN A 224 ALA A 225 -1 O GLN A 224 N LEU A 211 CISPEP 1 PHE A 427 PRO A 428 0 -6.39 SITE 1 AC1 4 LYS A 461 LEU A 528 ASP A 532 HOH A 680 SITE 1 AC2 1 ASP A 252 SITE 1 AC3 8 ASP A 420 LEU A 421 ASN A 431 TRP A 432 SITE 2 AC3 8 LEU A 433 HOH A 658 HOH A 683 HOH A 694 SITE 1 AC4 4 HIS A 245 GLN A 246 LYS A 249 VAL A 479 SITE 1 AC5 3 ILE A 451 ASP A 452 GLU A 518 SITE 1 AC6 2 ALA A 330 GLY A 390 SITE 1 AC7 2 ARG A 489 GLU A 545 CRYST1 128.182 128.182 105.788 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009453 0.00000