HEADER PROTEIN TRANSPORT 31-JAN-11 3QK9 TITLE YEAST TIM44 C-TERMINAL DOMAIN COMPLEXED WITH CYMAL-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT COMPND 3 TIM44; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: RESIDUES 210-431; COMPND 6 SYNONYM: INNER MEMBRANE IMPORT SITE PROTEIN 45, ISP45, MEMBRANE COMPND 7 IMPORT MACHINERY PROTEIN MIM44, MITOCHONDRIAL PROTEIN IMPORT PROTEIN COMPND 8 1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TIM44, ISP45, MIM44, MPI1, YIL022W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITOCHONDRION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.CUI,R.JOSYULA,Z.FU,B.SHA REVDAT 3 21-FEB-24 3QK9 1 REMARK REVDAT 2 20-JUL-11 3QK9 1 JRNL REVDAT 1 09-MAR-11 3QK9 0 JRNL AUTH W.CUI,R.JOSYULA,J.LI,Z.FU,B.SHA JRNL TITL MEMBRANE BINDING MECHANISM OF YEAST MITOCHONDRIAL PERIPHERAL JRNL TITL 2 MEMBRANE PROTEIN TIM44. JRNL REF PROTEIN PEPT.LETT. V. 18 718 2011 JRNL REFN ISSN 0929-8665 JRNL PMID 21342097 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.312 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 93.900 REMARK 3 FREE R VALUE TEST SET COUNT : 10634 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 608 REMARK 3 BIN FREE R VALUE : 0.4300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2836 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 106.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 5.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2886 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3881 ; 1.215 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ; 4.838 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;38.103 ;23.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 540 ;19.134 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.578 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2144 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1249 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1935 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 56 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1733 ; 1.565 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2799 ; 2.815 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1153 ; 1.005 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1082 ; 1.832 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-BM-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.998 REMARK 200 MONOCHROMATOR : INSERTION DEVICE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11326 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M AMMONIUM SULFATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 139.86000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.93000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.89500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.96500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 174.82500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 139.86000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.93000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.96500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.89500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 174.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 34.96500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 210 REMARK 465 ASN A 211 REMARK 465 ILE A 212 REMARK 465 GLU A 213 REMARK 465 SER A 214 REMARK 465 LYS A 215 REMARK 465 GLU A 216 REMARK 465 SER A 217 REMARK 465 PHE A 218 REMARK 465 GLY A 219 REMARK 465 LYS A 220 REMARK 465 LYS A 221 REMARK 465 VAL A 222 REMARK 465 GLU A 223 REMARK 465 ASP A 224 REMARK 465 PHE A 225 REMARK 465 LYS A 226 REMARK 465 GLU A 227 REMARK 465 LYS A 228 REMARK 465 THR A 229 REMARK 465 VAL A 230 REMARK 465 VAL A 231 REMARK 465 GLY A 232 REMARK 465 ARG A 233 REMARK 465 SER A 234 REMARK 465 ILE A 235 REMARK 465 LYS A 260 REMARK 465 VAL A 261 REMARK 465 GLY A 262 REMARK 465 GLY A 263 REMARK 465 PHE A 264 REMARK 465 PHE A 265 REMARK 465 ALA A 266 REMARK 465 GLU A 267 REMARK 465 THR A 268 REMARK 465 LEU A 279 REMARK 465 MET A 280 REMARK 465 ASP A 281 REMARK 465 PRO A 282 REMARK 465 THR A 283 REMARK 465 GLU A 407 REMARK 465 GLN A 408 REMARK 465 ILE A 409 REMARK 465 ASP A 410 REMARK 465 ASP A 411 REMARK 465 ASP A 412 REMARK 465 GLU A 413 REMARK 465 THR A 414 REMARK 465 THR B 210 REMARK 465 ASN B 211 REMARK 465 ILE B 212 REMARK 465 GLU B 213 REMARK 465 SER B 214 REMARK 465 LYS B 215 REMARK 465 GLU B 216 REMARK 465 SER B 217 REMARK 465 PHE B 218 REMARK 465 GLY B 219 REMARK 465 LYS B 220 REMARK 465 LYS B 221 REMARK 465 VAL B 222 REMARK 465 GLU B 223 REMARK 465 ASP B 224 REMARK 465 PHE B 225 REMARK 465 LYS B 226 REMARK 465 GLU B 227 REMARK 465 LYS B 228 REMARK 465 THR B 229 REMARK 465 VAL B 230 REMARK 465 VAL B 231 REMARK 465 GLY B 232 REMARK 465 ARG B 233 REMARK 465 SER B 234 REMARK 465 LYS B 260 REMARK 465 VAL B 261 REMARK 465 GLY B 262 REMARK 465 GLY B 263 REMARK 465 PHE B 264 REMARK 465 PHE B 265 REMARK 465 ALA B 266 REMARK 465 GLU B 267 REMARK 465 THR B 268 REMARK 465 LEU B 279 REMARK 465 MET B 280 REMARK 465 ASP B 281 REMARK 465 PRO B 282 REMARK 465 THR B 283 REMARK 465 GLU B 407 REMARK 465 GLN B 408 REMARK 465 ILE B 409 REMARK 465 ASP B 410 REMARK 465 ASP B 411 REMARK 465 ASP B 412 REMARK 465 GLU B 413 REMARK 465 THR B 414 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 386 CB - CA - C ANGL. DEV. = 10.7 DEGREES REMARK 500 ALA A 387 N - CA - CB ANGL. DEV. = -9.0 DEGREES REMARK 500 GLY B 348 N - CA - C ANGL. DEV. = -20.2 DEGREES REMARK 500 VAL B 349 N - CA - CB ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 258 49.61 -74.82 REMARK 500 TYR A 296 -73.41 -121.45 REMARK 500 ASP A 309 109.53 -52.58 REMARK 500 GLU A 384 -78.10 -116.98 REMARK 500 ALA A 386 -68.81 -142.21 REMARK 500 ALA A 391 45.61 -106.81 REMARK 500 TYR B 296 -60.91 -120.46 REMARK 500 VAL B 349 93.78 -160.25 REMARK 500 VAL B 352 -62.08 -90.37 REMARK 500 GLN B 360 -132.01 56.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 DBREF 3QK9 A 210 431 UNP Q01852 TIM44_YEAST 210 431 DBREF 3QK9 B 210 431 UNP Q01852 TIM44_YEAST 210 431 SEQRES 1 A 222 THR ASN ILE GLU SER LYS GLU SER PHE GLY LYS LYS VAL SEQRES 2 A 222 GLU ASP PHE LYS GLU LYS THR VAL VAL GLY ARG SER ILE SEQRES 3 A 222 GLN SER LEU LYS ASN LYS LEU TRP ASP GLU SER GLU ASN SEQRES 4 A 222 PRO LEU ILE VAL VAL MET ARG LYS ILE THR ASN LYS VAL SEQRES 5 A 222 GLY GLY PHE PHE ALA GLU THR GLU SER SER ARG VAL TYR SEQRES 6 A 222 SER GLN PHE LYS LEU MET ASP PRO THR PHE SER ASN GLU SEQRES 7 A 222 SER PHE THR ARG HIS LEU ARG GLU TYR ILE VAL PRO GLU SEQRES 8 A 222 ILE LEU GLU ALA TYR VAL LYS GLY ASP VAL LYS VAL LEU SEQRES 9 A 222 LYS LYS TRP PHE SER GLU ALA PRO PHE ASN VAL TYR ALA SEQRES 10 A 222 ALA GLN GLN LYS ILE PHE LYS GLU GLN ASP VAL TYR ALA SEQRES 11 A 222 ASP GLY ARG ILE LEU ASP ILE ARG GLY VAL GLU ILE VAL SEQRES 12 A 222 SER ALA LYS LEU LEU ALA PRO GLN ASP ILE PRO VAL LEU SEQRES 13 A 222 VAL VAL GLY CYS ARG ALA GLN GLU ILE ASN LEU TYR ARG SEQRES 14 A 222 LYS LYS LYS THR GLY GLU ILE ALA ALA GLY ASP GLU ALA SEQRES 15 A 222 ASN ILE LEU MET SER SER TYR ALA MET VAL PHE THR ARG SEQRES 16 A 222 ASP PRO GLU GLN ILE ASP ASP ASP GLU THR GLU GLY TRP SEQRES 17 A 222 LYS ILE LEU GLU PHE VAL ARG GLY GLY SER ARG GLN PHE SEQRES 18 A 222 THR SEQRES 1 B 222 THR ASN ILE GLU SER LYS GLU SER PHE GLY LYS LYS VAL SEQRES 2 B 222 GLU ASP PHE LYS GLU LYS THR VAL VAL GLY ARG SER ILE SEQRES 3 B 222 GLN SER LEU LYS ASN LYS LEU TRP ASP GLU SER GLU ASN SEQRES 4 B 222 PRO LEU ILE VAL VAL MET ARG LYS ILE THR ASN LYS VAL SEQRES 5 B 222 GLY GLY PHE PHE ALA GLU THR GLU SER SER ARG VAL TYR SEQRES 6 B 222 SER GLN PHE LYS LEU MET ASP PRO THR PHE SER ASN GLU SEQRES 7 B 222 SER PHE THR ARG HIS LEU ARG GLU TYR ILE VAL PRO GLU SEQRES 8 B 222 ILE LEU GLU ALA TYR VAL LYS GLY ASP VAL LYS VAL LEU SEQRES 9 B 222 LYS LYS TRP PHE SER GLU ALA PRO PHE ASN VAL TYR ALA SEQRES 10 B 222 ALA GLN GLN LYS ILE PHE LYS GLU GLN ASP VAL TYR ALA SEQRES 11 B 222 ASP GLY ARG ILE LEU ASP ILE ARG GLY VAL GLU ILE VAL SEQRES 12 B 222 SER ALA LYS LEU LEU ALA PRO GLN ASP ILE PRO VAL LEU SEQRES 13 B 222 VAL VAL GLY CYS ARG ALA GLN GLU ILE ASN LEU TYR ARG SEQRES 14 B 222 LYS LYS LYS THR GLY GLU ILE ALA ALA GLY ASP GLU ALA SEQRES 15 B 222 ASN ILE LEU MET SER SER TYR ALA MET VAL PHE THR ARG SEQRES 16 B 222 ASP PRO GLU GLN ILE ASP ASP ASP GLU THR GLU GLY TRP SEQRES 17 B 222 LYS ILE LEU GLU PHE VAL ARG GLY GLY SER ARG GLN PHE SEQRES 18 B 222 THR HET CL A 1 1 HET CL B 1 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *7(H2 O) HELIX 1 1 GLN A 236 SER A 246 1 11 HELIX 2 2 ASN A 248 THR A 258 1 11 HELIX 3 3 SER A 270 SER A 275 1 6 HELIX 4 4 SER A 285 TYR A 296 1 12 HELIX 5 5 TYR A 296 GLY A 308 1 13 HELIX 6 6 ASP A 309 PHE A 317 1 9 HELIX 7 7 SER A 318 GLU A 334 1 17 HELIX 8 8 ILE B 235 ASP B 244 1 10 HELIX 9 9 ASN B 248 ASN B 259 1 12 HELIX 10 10 SER B 270 SER B 275 1 6 HELIX 11 11 SER B 285 TYR B 296 1 12 HELIX 12 12 TYR B 296 GLY B 308 1 13 HELIX 13 13 ASP B 309 PHE B 317 1 9 HELIX 14 14 SER B 318 GLN B 335 1 18 SHEET 1 A 2 VAL A 337 ALA A 339 0 SHEET 2 A 2 TYR A 377 LYS A 379 -1 O ARG A 378 N TYR A 338 SHEET 1 B 4 ARG A 342 LEU A 356 0 SHEET 2 B 4 PRO A 363 ILE A 374 -1 O GLY A 368 N GLU A 350 SHEET 3 B 4 LEU A 394 ARG A 404 -1 O PHE A 402 N LEU A 365 SHEET 4 B 4 TRP A 417 VAL A 423 -1 O LYS A 418 N THR A 403 SHEET 1 C 3 VAL B 337 LEU B 356 0 SHEET 2 C 3 PRO B 363 LYS B 379 -1 O ARG B 378 N TYR B 338 SHEET 3 C 3 ILE B 385 GLY B 388 -1 O ALA B 386 N TYR B 377 SHEET 1 D 4 VAL B 337 LEU B 356 0 SHEET 2 D 4 PRO B 363 LYS B 379 -1 O ARG B 378 N TYR B 338 SHEET 3 D 4 LEU B 394 ARG B 404 -1 O PHE B 402 N LEU B 365 SHEET 4 D 4 TRP B 417 GLY B 426 -1 O LEU B 420 N VAL B 401 SITE 1 AC1 2 SER A 246 ARG B 428 SITE 1 AC2 3 ARG A 428 SER B 427 GLN B 429 CRYST1 100.595 100.595 209.790 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009941 0.005739 0.000000 0.00000 SCALE2 0.000000 0.011479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004767 0.00000