HEADER TRANSFERASE 01-FEB-11 3QKJ TITLE THE PWWP DOMAIN OF HUMAN DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3 BETA IN TITLE 2 COMPLEX WITH A BIS-TRIS MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA CYTOSINE-5 METHYLTRANSFERASE 3 BETA ISOFORM 6 VARIANT; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 293-442; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS DNMT3B, PWWP DOMAIN, METHYLTRANSFERASE 3 BETA, SGC, S-ADENOSYL-L- KEYWDS 2 METHIONINE, TRANSFERASE, ZINC-FINGER, STRUCTURAL GENOMICS, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM EXPDTA X-RAY DIFFRACTION AUTHOR H.ZENG,M.F.AMAYA,F.MACKENZIE,J.WEIGELT,M.SUNDSTROM,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOTCHKAREV,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 4 21-FEB-24 3QKJ 1 REMARK SEQADV REVDAT 3 20-JUL-11 3QKJ 1 JRNL REVDAT 2 16-MAR-11 3QKJ 1 REMARK REVDAT 1 09-MAR-11 3QKJ 0 JRNL AUTH H.WU,H.ZENG,R.LAM,W.TEMPEL,M.F.AMAYA,C.XU,L.DOMBROVSKI, JRNL AUTH 2 W.QIU,Y.WANG,J.MIN JRNL TITL STRUCTURAL AND HISTONE BINDING ABILITY CHARACTERIZATIONS OF JRNL TITL 2 HUMAN PWWP DOMAINS. JRNL REF PLOS ONE V. 6 18919 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21720545 JRNL DOI 10.1371/JOURNAL.PONE.0018919 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 62267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3163 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3907 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4106 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63550 REMARK 3 B22 (A**2) : 0.63550 REMARK 3 B33 (A**2) : -1.27100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL 0 NULL 0 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7010 54.1438 34.2364 REMARK 3 T TENSOR REMARK 3 T11: -0.0927 T22: -0.0298 REMARK 3 T33: -0.0860 T12: -0.0572 REMARK 3 T13: -0.0528 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 5.0892 L22: 2.4553 REMARK 3 L33: 1.6888 L12: 2.5632 REMARK 3 L13: -0.7524 L23: -0.4226 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.2184 S13: 0.0698 REMARK 3 S21: -0.0313 S22: -0.1308 S23: 0.0293 REMARK 3 S31: -0.0791 S32: 0.0172 S33: 0.0853 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL 0 NULL 0 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2937 38.2421 30.9742 REMARK 3 T TENSOR REMARK 3 T11: -0.0955 T22: -0.0314 REMARK 3 T33: -0.0848 T12: -0.0591 REMARK 3 T13: -0.0211 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 5.4446 L22: 2.0917 REMARK 3 L33: 1.7439 L12: 2.4279 REMARK 3 L13: -0.7148 L23: -0.2626 REMARK 3 S TENSOR REMARK 3 S11: -0.2003 S12: 0.1002 S13: 0.0979 REMARK 3 S21: -0.0642 S22: 0.1201 S23: 0.0449 REMARK 3 S31: -0.0255 S32: -0.0787 S33: 0.0801 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL 0 NULL 0 REMARK 3 ORIGIN FOR THE GROUP (A): 41.1942 76.6684 14.7812 REMARK 3 T TENSOR REMARK 3 T11: 0.0549 T22: -0.2727 REMARK 3 T33: -0.1341 T12: -0.0255 REMARK 3 T13: -0.0474 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.6835 L22: 3.6464 REMARK 3 L33: 8.2121 L12: -0.6989 REMARK 3 L13: 0.1582 L23: 0.3526 REMARK 3 S TENSOR REMARK 3 S11: 0.3775 S12: -0.0693 S13: -0.1255 REMARK 3 S21: -0.6515 S22: -0.0982 S23: 0.2552 REMARK 3 S31: 0.4524 S32: 0.2191 S33: -0.2793 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL 0 NULL 0 REMARK 3 ORIGIN FOR THE GROUP (A): 62.0665 45.6541 50.5457 REMARK 3 T TENSOR REMARK 3 T11: -0.2014 T22: -0.0031 REMARK 3 T33: -0.1260 T12: 0.1304 REMARK 3 T13: -0.0188 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 2.3219 L22: 2.6658 REMARK 3 L33: 7.7142 L12: -1.0124 REMARK 3 L13: 0.1041 L23: 0.1421 REMARK 3 S TENSOR REMARK 3 S11: -0.2953 S12: -0.2856 S13: 0.1509 REMARK 3 S21: 0.3408 S22: 0.5898 S23: -0.2175 REMARK 3 S31: 0.4443 S32: 0.2854 S33: -0.2945 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62267 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.84400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.42200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 205 REMARK 465 GLU A 206 REMARK 465 ALA A 207 REMARK 465 ASP A 208 REMARK 465 SER A 209 REMARK 465 GLY A 210 REMARK 465 ASP A 211 REMARK 465 GLY A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 SER A 319 REMARK 465 SER A 320 REMARK 465 PRO A 321 REMARK 465 GLY A 322 REMARK 465 ASP A 323 REMARK 465 SER A 324 REMARK 465 LEU A 325 REMARK 465 ASN A 352 REMARK 465 THR A 353 REMARK 465 GLN A 354 REMARK 465 PRO A 355 REMARK 465 GLY B 205 REMARK 465 GLU B 206 REMARK 465 ALA B 207 REMARK 465 ASP B 208 REMARK 465 SER B 209 REMARK 465 GLY B 210 REMARK 465 ASP B 211 REMARK 465 GLY B 212 REMARK 465 ASP B 213 REMARK 465 SER B 214 REMARK 465 SER B 319 REMARK 465 SER B 320 REMARK 465 PRO B 321 REMARK 465 GLY B 322 REMARK 465 ASP B 323 REMARK 465 SER B 324 REMARK 465 THR B 353 REMARK 465 GLN B 354 REMARK 465 PRO B 355 REMARK 465 GLY C 205 REMARK 465 GLU C 206 REMARK 465 ALA C 207 REMARK 465 ASP C 208 REMARK 465 SER C 209 REMARK 465 GLY C 210 REMARK 465 ASP C 211 REMARK 465 GLY C 212 REMARK 465 ASP C 213 REMARK 465 SER C 214 REMARK 465 SER C 215 REMARK 465 PRO C 318 REMARK 465 SER C 319 REMARK 465 SER C 320 REMARK 465 PRO C 321 REMARK 465 GLY C 322 REMARK 465 ASN C 352 REMARK 465 THR C 353 REMARK 465 GLN C 354 REMARK 465 PRO C 355 REMARK 465 GLY D 205 REMARK 465 GLU D 206 REMARK 465 ALA D 207 REMARK 465 ASP D 208 REMARK 465 SER D 209 REMARK 465 GLY D 210 REMARK 465 ASP D 211 REMARK 465 GLY D 212 REMARK 465 ASP D 213 REMARK 465 SER D 214 REMARK 465 SER D 215 REMARK 465 SER D 319 REMARK 465 SER D 320 REMARK 465 PRO D 321 REMARK 465 GLY D 322 REMARK 465 ASN D 351 REMARK 465 ASN D 352 REMARK 465 THR D 353 REMARK 465 GLN D 354 REMARK 465 PRO D 355 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 215 OG REMARK 470 LYS A 221 CD CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 294 CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 ASN A 351 CG OD1 ND2 REMARK 470 SER B 215 OG REMARK 470 LYS B 221 CD CE NZ REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 LYS B 251 CE NZ REMARK 470 LEU B 325 CG CD1 CD2 REMARK 470 GLU B 326 CG CD OE1 OE2 REMARK 470 LYS B 330 CE NZ REMARK 470 ASN B 351 OD1 ND2 REMARK 470 ASN B 352 CG OD1 ND2 REMARK 470 GLN C 218 CD OE1 NE2 REMARK 470 LYS C 221 CE NZ REMARK 470 LYS C 234 CG CD CE NZ REMARK 470 LYS C 251 CE NZ REMARK 470 LYS C 276 CG CD CE NZ REMARK 470 LYS C 294 CE NZ REMARK 470 LYS C 300 CG CD CE NZ REMARK 470 LYS C 341 CD CE NZ REMARK 470 ASN C 351 CG OD1 ND2 REMARK 470 GLN D 218 CG CD OE1 NE2 REMARK 470 LYS D 221 NZ REMARK 470 LYS D 234 CE NZ REMARK 470 LYS D 276 CG CD CE NZ REMARK 470 LYS D 294 CE NZ REMARK 470 LYS D 300 CG CD CE NZ REMARK 470 ASP D 323 CG OD1 OD2 REMARK 470 LYS D 341 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 223 123.70 79.74 REMARK 500 LYS A 251 -106.02 -111.17 REMARK 500 PHE B 223 125.77 77.76 REMARK 500 LYS B 251 -106.48 -112.34 REMARK 500 LYS B 251 -105.65 -112.34 REMARK 500 PHE C 223 124.53 76.92 REMARK 500 LYS C 251 -106.02 -113.95 REMARK 500 PHE D 223 120.66 82.31 REMARK 500 LYS D 251 -105.08 -111.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB B 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB C 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB D 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 2 DBREF 3QKJ A 206 355 UNP Q59H79 Q59H79_HUMAN 293 442 DBREF 3QKJ B 206 355 UNP Q59H79 Q59H79_HUMAN 293 442 DBREF 3QKJ C 206 355 UNP Q59H79 Q59H79_HUMAN 293 442 DBREF 3QKJ D 206 355 UNP Q59H79 Q59H79_HUMAN 293 442 SEQADV 3QKJ GLY A 205 UNP Q59H79 EXPRESSION TAG SEQADV 3QKJ GLY B 205 UNP Q59H79 EXPRESSION TAG SEQADV 3QKJ GLY C 205 UNP Q59H79 EXPRESSION TAG SEQADV 3QKJ GLY D 205 UNP Q59H79 EXPRESSION TAG SEQRES 1 A 151 GLY GLU ALA ASP SER GLY ASP GLY ASP SER SER GLU TYR SEQRES 2 A 151 GLN ASP GLY LYS GLU PHE GLY ILE GLY ASP LEU VAL TRP SEQRES 3 A 151 GLY LYS ILE LYS GLY PHE SER TRP TRP PRO ALA MET VAL SEQRES 4 A 151 VAL SER TRP LYS ALA THR SER LYS ARG GLN ALA MET SER SEQRES 5 A 151 GLY MET ARG TRP VAL GLN TRP PHE GLY ASP GLY LYS PHE SEQRES 6 A 151 SER GLU VAL SER ALA ASP LYS LEU VAL ALA LEU GLY LEU SEQRES 7 A 151 PHE SER GLN HIS PHE ASN LEU ALA THR PHE ASN LYS LEU SEQRES 8 A 151 VAL SER TYR ARG LYS ALA MET TYR HIS ALA LEU GLU LYS SEQRES 9 A 151 ALA ARG VAL ARG ALA GLY LYS THR PHE PRO SER SER PRO SEQRES 10 A 151 GLY ASP SER LEU GLU ASP GLN LEU LYS PRO MET LEU GLU SEQRES 11 A 151 TRP ALA HIS GLY GLY PHE LYS PRO THR GLY ILE GLU GLY SEQRES 12 A 151 LEU LYS PRO ASN ASN THR GLN PRO SEQRES 1 B 151 GLY GLU ALA ASP SER GLY ASP GLY ASP SER SER GLU TYR SEQRES 2 B 151 GLN ASP GLY LYS GLU PHE GLY ILE GLY ASP LEU VAL TRP SEQRES 3 B 151 GLY LYS ILE LYS GLY PHE SER TRP TRP PRO ALA MET VAL SEQRES 4 B 151 VAL SER TRP LYS ALA THR SER LYS ARG GLN ALA MET SER SEQRES 5 B 151 GLY MET ARG TRP VAL GLN TRP PHE GLY ASP GLY LYS PHE SEQRES 6 B 151 SER GLU VAL SER ALA ASP LYS LEU VAL ALA LEU GLY LEU SEQRES 7 B 151 PHE SER GLN HIS PHE ASN LEU ALA THR PHE ASN LYS LEU SEQRES 8 B 151 VAL SER TYR ARG LYS ALA MET TYR HIS ALA LEU GLU LYS SEQRES 9 B 151 ALA ARG VAL ARG ALA GLY LYS THR PHE PRO SER SER PRO SEQRES 10 B 151 GLY ASP SER LEU GLU ASP GLN LEU LYS PRO MET LEU GLU SEQRES 11 B 151 TRP ALA HIS GLY GLY PHE LYS PRO THR GLY ILE GLU GLY SEQRES 12 B 151 LEU LYS PRO ASN ASN THR GLN PRO SEQRES 1 C 151 GLY GLU ALA ASP SER GLY ASP GLY ASP SER SER GLU TYR SEQRES 2 C 151 GLN ASP GLY LYS GLU PHE GLY ILE GLY ASP LEU VAL TRP SEQRES 3 C 151 GLY LYS ILE LYS GLY PHE SER TRP TRP PRO ALA MET VAL SEQRES 4 C 151 VAL SER TRP LYS ALA THR SER LYS ARG GLN ALA MET SER SEQRES 5 C 151 GLY MET ARG TRP VAL GLN TRP PHE GLY ASP GLY LYS PHE SEQRES 6 C 151 SER GLU VAL SER ALA ASP LYS LEU VAL ALA LEU GLY LEU SEQRES 7 C 151 PHE SER GLN HIS PHE ASN LEU ALA THR PHE ASN LYS LEU SEQRES 8 C 151 VAL SER TYR ARG LYS ALA MET TYR HIS ALA LEU GLU LYS SEQRES 9 C 151 ALA ARG VAL ARG ALA GLY LYS THR PHE PRO SER SER PRO SEQRES 10 C 151 GLY ASP SER LEU GLU ASP GLN LEU LYS PRO MET LEU GLU SEQRES 11 C 151 TRP ALA HIS GLY GLY PHE LYS PRO THR GLY ILE GLU GLY SEQRES 12 C 151 LEU LYS PRO ASN ASN THR GLN PRO SEQRES 1 D 151 GLY GLU ALA ASP SER GLY ASP GLY ASP SER SER GLU TYR SEQRES 2 D 151 GLN ASP GLY LYS GLU PHE GLY ILE GLY ASP LEU VAL TRP SEQRES 3 D 151 GLY LYS ILE LYS GLY PHE SER TRP TRP PRO ALA MET VAL SEQRES 4 D 151 VAL SER TRP LYS ALA THR SER LYS ARG GLN ALA MET SER SEQRES 5 D 151 GLY MET ARG TRP VAL GLN TRP PHE GLY ASP GLY LYS PHE SEQRES 6 D 151 SER GLU VAL SER ALA ASP LYS LEU VAL ALA LEU GLY LEU SEQRES 7 D 151 PHE SER GLN HIS PHE ASN LEU ALA THR PHE ASN LYS LEU SEQRES 8 D 151 VAL SER TYR ARG LYS ALA MET TYR HIS ALA LEU GLU LYS SEQRES 9 D 151 ALA ARG VAL ARG ALA GLY LYS THR PHE PRO SER SER PRO SEQRES 10 D 151 GLY ASP SER LEU GLU ASP GLN LEU LYS PRO MET LEU GLU SEQRES 11 D 151 TRP ALA HIS GLY GLY PHE LYS PRO THR GLY ILE GLU GLY SEQRES 12 D 151 LEU LYS PRO ASN ASN THR GLN PRO HET BTB A 356 14 HET SO4 A 3 5 HET SO4 A 4 5 HET BTB B 356 14 HET SO4 B 5 5 HET SO4 B 6 5 HET BTB C 356 14 HET BTB D 356 14 HET SO4 D 1 5 HET SO4 D 2 5 HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM SO4 SULFATE ION HETSYN BTB BIS-TRIS BUFFER FORMUL 5 BTB 4(C8 H19 N O5) FORMUL 6 SO4 6(O4 S 2-) FORMUL 15 HOH *263(H2 O) HELIX 1 1 SER A 245 THR A 249 5 5 HELIX 2 2 ASN A 288 LEU A 295 1 8 HELIX 3 3 LEU A 295 GLY A 314 1 20 HELIX 4 4 GLN A 328 GLY A 338 1 11 HELIX 5 5 THR A 343 LYS A 349 5 7 HELIX 6 6 SER B 245 THR B 249 5 5 HELIX 7 7 LEU B 282 PHE B 287 1 6 HELIX 8 8 ASN B 288 LEU B 295 1 8 HELIX 9 9 LEU B 295 GLY B 314 1 20 HELIX 10 10 LEU B 325 GLY B 338 1 14 HELIX 11 11 THR B 343 LYS B 349 5 7 HELIX 12 12 SER C 245 THR C 249 5 5 HELIX 13 13 LEU C 282 PHE C 287 1 6 HELIX 14 14 ASN C 288 LEU C 295 1 8 HELIX 15 15 LEU C 295 GLY C 314 1 20 HELIX 16 16 SER C 324 GLY C 338 1 15 HELIX 17 17 THR C 343 LYS C 349 5 7 HELIX 18 18 SER D 245 THR D 249 5 5 HELIX 19 19 LEU D 282 PHE D 287 1 6 HELIX 20 20 ASN D 288 LEU D 295 1 8 HELIX 21 21 LEU D 295 GLY D 314 1 20 HELIX 22 22 SER D 324 GLY D 338 1 15 HELIX 23 23 THR D 343 LYS D 349 5 7 SHEET 1 A 5 PHE A 269 SER A 273 0 SHEET 2 A 5 MET A 258 TRP A 263 -1 N ARG A 259 O VAL A 272 SHEET 3 A 5 TRP A 239 VAL A 244 -1 N MET A 242 O GLN A 262 SHEET 4 A 5 LEU A 228 GLY A 231 -1 N GLY A 231 O TRP A 239 SHEET 5 A 5 LEU A 277 ALA A 279 -1 O VAL A 278 N TRP A 230 SHEET 1 B 5 PHE B 269 SER B 273 0 SHEET 2 B 5 MET B 258 TRP B 263 -1 N ARG B 259 O VAL B 272 SHEET 3 B 5 TRP B 239 VAL B 244 -1 N MET B 242 O GLN B 262 SHEET 4 B 5 LEU B 228 GLY B 231 -1 N GLY B 231 O TRP B 239 SHEET 5 B 5 LEU B 277 ALA B 279 -1 O VAL B 278 N TRP B 230 SHEET 1 C 5 PHE C 269 SER C 273 0 SHEET 2 C 5 MET C 258 TRP C 263 -1 N ARG C 259 O VAL C 272 SHEET 3 C 5 TRP C 239 VAL C 244 -1 N MET C 242 O GLN C 262 SHEET 4 C 5 LEU C 228 GLY C 231 -1 N GLY C 231 O TRP C 239 SHEET 5 C 5 LEU C 277 ALA C 279 -1 O VAL C 278 N TRP C 230 SHEET 1 D 5 PHE D 269 SER D 273 0 SHEET 2 D 5 MET D 258 TRP D 263 -1 N ARG D 259 O VAL D 272 SHEET 3 D 5 TRP D 239 VAL D 244 -1 N MET D 242 O GLN D 262 SHEET 4 D 5 LEU D 228 GLY D 231 -1 N GLY D 231 O TRP D 239 SHEET 5 D 5 LEU D 277 ALA D 279 -1 O VAL D 278 N TRP D 230 CISPEP 1 LYS A 341 PRO A 342 0 6.82 CISPEP 2 LYS B 341 PRO B 342 0 7.94 CISPEP 3 LYS C 341 PRO C 342 0 7.33 CISPEP 4 LYS D 341 PRO D 342 0 7.30 SITE 1 AC1 7 ILE A 233 PHE A 236 TRP A 239 TRP A 263 SITE 2 AC1 7 ASP A 266 LYS A 268 HOH A 362 SITE 1 AC2 3 LYS A 308 ARG A 312 ASN A 351 SITE 1 AC3 3 ARG A 310 THR A 316 LYS D 234 SITE 1 AC4 5 HOH B 3 ILE B 233 PHE B 236 TRP B 263 SITE 2 AC4 5 ASP B 266 SITE 1 AC5 2 LYS B 300 ARG C 252 SITE 1 AC6 1 ARG B 252 SITE 1 AC7 6 ILE C 233 TRP C 239 TRP C 263 ASP C 266 SITE 2 AC7 6 LYS C 268 HOH C 367 SITE 1 AC8 7 HOH D 134 ILE D 233 PHE D 236 TRP D 239 SITE 2 AC8 7 TRP D 263 ASP D 266 LYS D 268 SITE 1 AC9 6 LYS C 232 TRP C 238 HOH C 361 HOH C 364 SITE 2 AC9 6 LYS D 232 TRP D 238 SITE 1 BC1 3 LYS D 251 ARG D 252 HOH D 360 CRYST1 74.544 74.544 160.266 90.00 90.00 120.00 P 32 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013415 0.007745 0.000000 0.00000 SCALE2 0.000000 0.015490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006240 0.00000