HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 03-FEB-11 3QLZ TITLE CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5- TITLE 2 [3-(2,5-DIMETHOXYPHENYL)PROP-1-YN-1-YL]-6-PROPYLPYRIMIDINE-2,4- TITLE 3 DIAMINE (UCP130B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRAIN CBS138 CHROMOSOME J COMPLETE SEQUENCE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA GLABRATA; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5478; SOURCE 5 GENE: CAGL0J03894G, DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET41 KEYWDS ANTIFUNGAL AGENTS, CANDIDA GLABRATA, DRUG DESIGN, ENZYME INHIBITORS, KEYWDS 2 FUNGAL PROTEINS, MODELS, MOLECULAR STRUCTURE, STRUCTURE-ACTIVITY KEYWDS 3 RELATIONSHIP, TETRAHYDROFOLATE DEHYDROGENASE, OXIDOREDUCTASE- KEYWDS 4 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.PAULSEN,S.D.BENDEL,A.C.ANDERSON REVDAT 4 13-SEP-23 3QLZ 1 REMARK SEQADV REVDAT 3 20-NOV-13 3QLZ 1 FORMUL HET HETATM HETNAM REVDAT 3 2 1 HETSYN SITE REVDAT 2 28-SEP-11 3QLZ 1 JRNL REVDAT 1 20-JUL-11 3QLZ 0 JRNL AUTH J.L.PAULSEN,S.D.BENDEL,A.C.ANDERSON JRNL TITL CRYSTAL STRUCTURES OF CANDIDA ALBICANS DIHYDROFOLATE JRNL TITL 2 REDUCTASE BOUND TO PROPARGYL-LINKED ANTIFOLATES REVEAL THE JRNL TITL 3 FLEXIBILITY OF ACTIVE SITE LOOP RESIDUES CRITICAL FOR LIGAND JRNL TITL 4 POTENCY AND SELECTIVITY. JRNL REF CHEM.BIOL.DRUG DES. V. 78 505 2011 JRNL REFN ISSN 1747-0277 JRNL PMID 21726415 JRNL DOI 10.1111/J.1747-0285.2011.01169.X REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 27675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 147 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.797 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3936 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5338 ; 0.970 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 9.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;38.098 ;24.086 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;15.755 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.552 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2940 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1654 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2589 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 138 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2321 ; 1.237 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3646 ; 1.775 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1898 ; 2.752 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1692 ; 4.083 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 227 1 REMARK 3 1 B 1 B 227 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1846 ; 0.100 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 1846 ; 0.120 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MGCL2, TRIS, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.11800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.55900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.67700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 85 101.67 -171.85 REMARK 500 ASN A 193 46.28 37.63 REMARK 500 LYS A 205 -121.61 47.66 REMARK 500 LEU B 85 99.78 -171.93 REMARK 500 ASN B 193 45.74 38.36 REMARK 500 LYS B 205 -122.14 44.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 122 GLY A 123 -114.89 REMARK 500 GLY B 122 GLY B 123 -116.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QLZ A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QLZ B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 230 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EEJ RELATED DB: PDB REMARK 900 CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH 2,4-DIAMINO- REMARK 900 5-[3-METHYL-3-(3-METHOXY-5-PHENYLPHENYL)PROP-1-YNYL]-6- REMARK 900 METHYLPYRIMIDINE(UCP111D) AND NADPH REMARK 900 RELATED ID: 3EEK RELATED DB: PDB REMARK 900 CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH 2,4-DIAMINO- REMARK 900 5-[3-METHYL-3-(3-METHOXY-5-(4-METHYLPHENYL)PHENYL)PROP-1-YNYL]-6- REMARK 900 METHYLPYRIMIDINE(UCP111D4M) AND NADPH REMARK 900 RELATED ID: 3EEL RELATED DB: PDB REMARK 900 CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH 2,4-DIAMINO- REMARK 900 5-[3-METHYL-3-(3-METHOXY-5-(3,5-DIMETHYLPHENYL)PHENYL)PROP-1-YNYL]- REMARK 900 6-METHYLPYRIMIDINE(UCP11153TM) AND NADPH REMARK 900 RELATED ID: 3EEM RELATED DB: PDB REMARK 900 CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH 2,4-DIAMINO- REMARK 900 5-[3-METHYL-3-(3-METHOXY-5-(2,6-DIMETHYLPHENYL)PHENYL)PROP-1-YNYL]- REMARK 900 6-METHYLPYRIMIDINE(UCP111D26M) AND NADPH REMARK 900 RELATED ID: 3CSE RELATED DB: PDB REMARK 900 CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 2, REMARK 900 4-DIAMINO-5-(3-(2,5-DIMETHOXYPHENYL)PROP-1-YNYL)-6-ETHYLPYRIMIDINE REMARK 900 (UCP120B) DBREF 3QLZ A 1 217 UNP Q6FPH0 Q6FPH0_CANGA 1 217 DBREF 3QLZ B 1 217 UNP Q6FPH0 Q6FPH0_CANGA 1 217 SEQADV 3QLZ LEU A 218 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ GLU A 219 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS A 220 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS A 221 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS A 222 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS A 223 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS A 224 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS A 225 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS A 226 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS A 227 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ LEU B 218 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ GLU B 219 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS B 220 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS B 221 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS B 222 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS B 223 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS B 224 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS B 225 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS B 226 UNP Q6FPH0 EXPRESSION TAG SEQADV 3QLZ HIS B 227 UNP Q6FPH0 EXPRESSION TAG SEQRES 1 A 227 MET SER LYS VAL PRO VAL VAL GLY ILE VAL ALA ALA LEU SEQRES 2 A 227 LEU PRO GLU MET GLY ILE GLY PHE GLN GLY ASN LEU PRO SEQRES 3 A 227 TRP ARG LEU ALA LYS GLU MET LYS TYR PHE ARG GLU VAL SEQRES 4 A 227 THR THR LEU THR ASN ASP ASN SER LYS GLN ASN VAL VAL SEQRES 5 A 227 ILE MET GLY ARG LYS THR TRP GLU SER ILE PRO GLN LYS SEQRES 6 A 227 PHE ARG PRO LEU PRO LYS ARG ILE ASN VAL VAL VAL SER SEQRES 7 A 227 ARG SER PHE ASP GLY GLU LEU ARG LYS VAL GLU ASP GLY SEQRES 8 A 227 ILE TYR HIS SER ASN SER LEU ARG ASN CYS LEU THR ALA SEQRES 9 A 227 LEU GLN SER SER LEU ALA ASN GLU ASN LYS ILE GLU ARG SEQRES 10 A 227 ILE TYR ILE ILE GLY GLY GLY GLU ILE TYR ARG GLN SER SEQRES 11 A 227 MET ASP LEU ALA ASP HIS TRP LEU ILE THR LYS ILE MET SEQRES 12 A 227 PRO LEU PRO GLU THR THR ILE PRO GLN MET ASP THR PHE SEQRES 13 A 227 LEU GLN LYS GLN GLU LEU GLU GLN ARG PHE TYR ASP ASN SEQRES 14 A 227 SER ASP LYS LEU VAL ASP PHE LEU PRO SER SER ILE GLN SEQRES 15 A 227 LEU GLU GLY ARG LEU THR SER GLN GLU TRP ASN GLY GLU SEQRES 16 A 227 LEU VAL LYS GLY LEU PRO VAL GLN GLU LYS GLY TYR GLN SEQRES 17 A 227 PHE TYR PHE THR LEU TYR THR LYS LYS LEU GLU HIS HIS SEQRES 18 A 227 HIS HIS HIS HIS HIS HIS SEQRES 1 B 227 MET SER LYS VAL PRO VAL VAL GLY ILE VAL ALA ALA LEU SEQRES 2 B 227 LEU PRO GLU MET GLY ILE GLY PHE GLN GLY ASN LEU PRO SEQRES 3 B 227 TRP ARG LEU ALA LYS GLU MET LYS TYR PHE ARG GLU VAL SEQRES 4 B 227 THR THR LEU THR ASN ASP ASN SER LYS GLN ASN VAL VAL SEQRES 5 B 227 ILE MET GLY ARG LYS THR TRP GLU SER ILE PRO GLN LYS SEQRES 6 B 227 PHE ARG PRO LEU PRO LYS ARG ILE ASN VAL VAL VAL SER SEQRES 7 B 227 ARG SER PHE ASP GLY GLU LEU ARG LYS VAL GLU ASP GLY SEQRES 8 B 227 ILE TYR HIS SER ASN SER LEU ARG ASN CYS LEU THR ALA SEQRES 9 B 227 LEU GLN SER SER LEU ALA ASN GLU ASN LYS ILE GLU ARG SEQRES 10 B 227 ILE TYR ILE ILE GLY GLY GLY GLU ILE TYR ARG GLN SER SEQRES 11 B 227 MET ASP LEU ALA ASP HIS TRP LEU ILE THR LYS ILE MET SEQRES 12 B 227 PRO LEU PRO GLU THR THR ILE PRO GLN MET ASP THR PHE SEQRES 13 B 227 LEU GLN LYS GLN GLU LEU GLU GLN ARG PHE TYR ASP ASN SEQRES 14 B 227 SER ASP LYS LEU VAL ASP PHE LEU PRO SER SER ILE GLN SEQRES 15 B 227 LEU GLU GLY ARG LEU THR SER GLN GLU TRP ASN GLY GLU SEQRES 16 B 227 LEU VAL LYS GLY LEU PRO VAL GLN GLU LYS GLY TYR GLN SEQRES 17 B 227 PHE TYR PHE THR LEU TYR THR LYS LYS LEU GLU HIS HIS SEQRES 18 B 227 HIS HIS HIS HIS HIS HIS HET NDP A 228 48 HET QLZ A 229 24 HET MG A 230 1 HET MG A 231 1 HET NDP B 228 48 HET QLZ B 229 24 HET MG B 230 1 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM QLZ 5-[3-(2,5-DIMETHOXYPHENYL)PROP-1-YN-1-YL]-6- HETNAM 2 QLZ PROPYLPYRIMIDINE-2,4-DIAMINE HETNAM MG MAGNESIUM ION FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 QLZ 2(C18 H22 N4 O2) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *192(H2 O) HELIX 1 1 LEU A 29 LEU A 42 1 14 HELIX 2 2 ARG A 56 SER A 61 1 6 HELIX 3 3 SER A 97 SER A 107 1 11 HELIX 4 4 SER A 107 GLU A 112 1 6 HELIX 5 5 GLY A 123 GLN A 129 1 7 HELIX 6 6 GLN A 158 ARG A 165 1 8 HELIX 7 7 LYS A 172 LEU A 177 1 6 HELIX 8 8 LEU B 29 LEU B 42 1 14 HELIX 9 9 ARG B 56 SER B 61 1 6 HELIX 10 10 SER B 97 GLN B 106 1 10 HELIX 11 11 SER B 107 GLU B 112 1 6 HELIX 12 12 GLY B 123 GLN B 129 1 7 HELIX 13 13 GLN B 158 ARG B 165 1 8 HELIX 14 14 LYS B 172 LEU B 177 1 6 SHEET 1 A 9 ARG A 86 GLU A 89 0 SHEET 2 A 9 ILE A 92 SER A 95 -1 O HIS A 94 N ARG A 86 SHEET 3 A 9 ILE A 73 VAL A 77 1 N VAL A 76 O TYR A 93 SHEET 4 A 9 GLN A 49 GLY A 55 1 N VAL A 52 O ILE A 73 SHEET 5 A 9 ILE A 115 ILE A 120 1 O TYR A 119 N VAL A 51 SHEET 6 A 9 VAL A 6 LEU A 13 1 N VAL A 7 O ILE A 118 SHEET 7 A 9 HIS A 136 PRO A 144 1 O ILE A 142 N ALA A 12 SHEET 8 A 9 TYR A 207 LYS A 216 -1 O TYR A 214 N TRP A 137 SHEET 9 A 9 PHE A 166 ASP A 168 -1 N TYR A 167 O THR A 215 SHEET 1 B10 ARG A 86 GLU A 89 0 SHEET 2 B10 ILE A 92 SER A 95 -1 O HIS A 94 N ARG A 86 SHEET 3 B10 ILE A 73 VAL A 77 1 N VAL A 76 O TYR A 93 SHEET 4 B10 GLN A 49 GLY A 55 1 N VAL A 52 O ILE A 73 SHEET 5 B10 ILE A 115 ILE A 120 1 O TYR A 119 N VAL A 51 SHEET 6 B10 VAL A 6 LEU A 13 1 N VAL A 7 O ILE A 118 SHEET 7 B10 HIS A 136 PRO A 144 1 O ILE A 142 N ALA A 12 SHEET 8 B10 TYR A 207 LYS A 216 -1 O TYR A 214 N TRP A 137 SHEET 9 B10 GLU A 195 GLU A 204 -1 N VAL A 202 O PHE A 209 SHEET 10 B10 THR A 188 TRP A 192 -1 N GLN A 190 O VAL A 197 SHEET 1 C 2 GLY A 18 GLY A 20 0 SHEET 2 C 2 THR A 155 PHE A 156 -1 O THR A 155 N ILE A 19 SHEET 1 D 9 ARG B 86 GLU B 89 0 SHEET 2 D 9 ILE B 92 SER B 95 -1 O HIS B 94 N ARG B 86 SHEET 3 D 9 ILE B 73 VAL B 77 1 N ASN B 74 O TYR B 93 SHEET 4 D 9 GLN B 49 GLY B 55 1 N VAL B 52 O ILE B 73 SHEET 5 D 9 ILE B 115 ILE B 120 1 O TYR B 119 N VAL B 51 SHEET 6 D 9 VAL B 6 LEU B 13 1 N VAL B 7 O ILE B 118 SHEET 7 D 9 HIS B 136 PRO B 144 1 O ILE B 142 N ALA B 12 SHEET 8 D 9 TYR B 207 LYS B 216 -1 O TYR B 214 N TRP B 137 SHEET 9 D 9 PHE B 166 ASP B 168 -1 N TYR B 167 O THR B 215 SHEET 1 E10 ARG B 86 GLU B 89 0 SHEET 2 E10 ILE B 92 SER B 95 -1 O HIS B 94 N ARG B 86 SHEET 3 E10 ILE B 73 VAL B 77 1 N ASN B 74 O TYR B 93 SHEET 4 E10 GLN B 49 GLY B 55 1 N VAL B 52 O ILE B 73 SHEET 5 E10 ILE B 115 ILE B 120 1 O TYR B 119 N VAL B 51 SHEET 6 E10 VAL B 6 LEU B 13 1 N VAL B 7 O ILE B 118 SHEET 7 E10 HIS B 136 PRO B 144 1 O ILE B 142 N ALA B 12 SHEET 8 E10 TYR B 207 LYS B 216 -1 O TYR B 214 N TRP B 137 SHEET 9 E10 GLU B 195 GLU B 204 -1 N VAL B 202 O PHE B 209 SHEET 10 E10 THR B 188 TRP B 192 -1 N GLN B 190 O VAL B 197 SHEET 1 F 2 GLY B 18 GLY B 20 0 SHEET 2 F 2 THR B 155 PHE B 156 -1 O THR B 155 N ILE B 19 CISPEP 1 LEU A 14 PRO A 15 0 2.94 CISPEP 2 ARG A 67 PRO A 68 0 0.58 CISPEP 3 LEU B 14 PRO B 15 0 2.60 CISPEP 4 ARG B 67 PRO B 68 0 2.54 SITE 1 AC1 32 VAL A 10 ALA A 11 ILE A 19 GLY A 20 SITE 2 AC1 32 GLY A 23 ASN A 24 LEU A 25 GLY A 55 SITE 3 AC1 32 ARG A 56 LYS A 57 THR A 58 VAL A 77 SITE 4 AC1 32 SER A 78 ARG A 79 ASN A 96 SER A 97 SITE 5 AC1 32 LEU A 98 ILE A 121 GLY A 123 GLY A 124 SITE 6 AC1 32 GLU A 125 ILE A 126 TYR A 127 GLN A 129 SITE 7 AC1 32 QLZ A 229 MG A 230 HOH A 257 HOH A 261 SITE 8 AC1 32 HOH A 290 HOH A 292 HOH A 321 HOH A 329 SITE 1 AC2 28 VAL B 10 ALA B 11 ILE B 19 GLY B 20 SITE 2 AC2 28 GLY B 23 ASN B 24 LEU B 25 GLY B 55 SITE 3 AC2 28 ARG B 56 LYS B 57 THR B 58 VAL B 77 SITE 4 AC2 28 SER B 78 ARG B 79 ASN B 96 SER B 97 SITE 5 AC2 28 LEU B 98 ILE B 121 GLY B 123 GLY B 124 SITE 6 AC2 28 GLU B 125 ILE B 126 TYR B 127 GLN B 129 SITE 7 AC2 28 QLZ B 229 HOH B 253 HOH B 276 HOH B 303 SITE 1 AC3 12 ILE A 9 VAL A 10 ALA A 11 LEU A 25 SITE 2 AC3 12 GLU A 32 MET A 33 PHE A 36 SER A 61 SITE 3 AC3 12 ILE A 121 TYR A 127 THR A 140 NDP A 228 SITE 1 AC4 12 ILE B 9 VAL B 10 ALA B 11 LEU B 25 SITE 2 AC4 12 GLU B 32 MET B 33 PHE B 36 SER B 61 SITE 3 AC4 12 ILE B 121 TYR B 127 THR B 140 NDP B 228 SITE 1 AC5 5 SER A 97 LEU A 98 ARG A 99 NDP A 228 SITE 2 AC5 5 ARG B 79 SITE 1 AC6 3 ASP A 82 ARG A 86 HOH A 306 SITE 1 AC7 1 ASP B 82 CRYST1 42.607 42.607 230.236 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023470 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004343 0.00000 CONECT 3695 3696 3697 3698 3717 CONECT 3696 3695 CONECT 3697 3695 CONECT 3698 3695 3699 CONECT 3699 3698 3700 CONECT 3700 3699 3701 3702 CONECT 3701 3700 3706 CONECT 3702 3700 3703 3704 CONECT 3703 3702 CONECT 3704 3702 3705 3706 CONECT 3705 3704 3739 CONECT 3706 3701 3704 3707 CONECT 3707 3706 3708 3716 CONECT 3708 3707 3709 CONECT 3709 3708 3710 CONECT 3710 3709 3711 3716 CONECT 3711 3710 3712 3713 CONECT 3712 3711 CONECT 3713 3711 3714 CONECT 3714 3713 3715 CONECT 3715 3714 3716 CONECT 3716 3707 3710 3715 CONECT 3717 3695 3718 CONECT 3718 3717 3719 3720 3721 CONECT 3719 3718 CONECT 3720 3718 CONECT 3721 3718 3722 CONECT 3722 3721 3723 CONECT 3723 3722 3724 3725 CONECT 3724 3723 3729 CONECT 3725 3723 3726 3727 CONECT 3726 3725 CONECT 3727 3725 3728 3729 CONECT 3728 3727 CONECT 3729 3724 3727 3730 CONECT 3730 3729 3731 3738 CONECT 3731 3730 3732 CONECT 3732 3731 3733 3736 CONECT 3733 3732 3734 3735 CONECT 3734 3733 CONECT 3735 3733 CONECT 3736 3732 3737 CONECT 3737 3736 3738 CONECT 3738 3730 3737 CONECT 3739 3705 3740 3741 3742 CONECT 3740 3739 CONECT 3741 3739 CONECT 3742 3739 CONECT 3743 3744 3748 CONECT 3744 3743 3745 3752 CONECT 3745 3744 3746 CONECT 3746 3745 3747 3761 CONECT 3747 3746 3748 3755 CONECT 3748 3743 3747 3753 CONECT 3749 3759 CONECT 3750 3762 CONECT 3751 3763 CONECT 3752 3744 CONECT 3753 3748 CONECT 3754 3755 3760 CONECT 3755 3747 3754 CONECT 3756 3757 3764 CONECT 3757 3756 3766 CONECT 3758 3764 3765 CONECT 3759 3749 3761 CONECT 3760 3754 3765 CONECT 3761 3746 3759 CONECT 3762 3750 3764 CONECT 3763 3751 3766 CONECT 3764 3756 3758 3762 CONECT 3765 3758 3760 3766 CONECT 3766 3757 3763 3765 CONECT 3769 3770 3771 3772 3791 CONECT 3770 3769 CONECT 3771 3769 CONECT 3772 3769 3773 CONECT 3773 3772 3774 CONECT 3774 3773 3775 3776 CONECT 3775 3774 3780 CONECT 3776 3774 3777 3778 CONECT 3777 3776 CONECT 3778 3776 3779 3780 CONECT 3779 3778 3813 CONECT 3780 3775 3778 3781 CONECT 3781 3780 3782 3790 CONECT 3782 3781 3783 CONECT 3783 3782 3784 CONECT 3784 3783 3785 3790 CONECT 3785 3784 3786 3787 CONECT 3786 3785 CONECT 3787 3785 3788 CONECT 3788 3787 3789 CONECT 3789 3788 3790 CONECT 3790 3781 3784 3789 CONECT 3791 3769 3792 CONECT 3792 3791 3793 3794 3795 CONECT 3793 3792 CONECT 3794 3792 CONECT 3795 3792 3796 CONECT 3796 3795 3797 CONECT 3797 3796 3798 3799 CONECT 3798 3797 3803 CONECT 3799 3797 3800 3801 CONECT 3800 3799 CONECT 3801 3799 3802 3803 CONECT 3802 3801 CONECT 3803 3798 3801 3804 CONECT 3804 3803 3805 3812 CONECT 3805 3804 3806 CONECT 3806 3805 3807 3810 CONECT 3807 3806 3808 3809 CONECT 3808 3807 CONECT 3809 3807 CONECT 3810 3806 3811 CONECT 3811 3810 3812 CONECT 3812 3804 3811 CONECT 3813 3779 3814 3815 3816 CONECT 3814 3813 CONECT 3815 3813 CONECT 3816 3813 CONECT 3817 3818 3822 CONECT 3818 3817 3819 3826 CONECT 3819 3818 3820 CONECT 3820 3819 3821 3835 CONECT 3821 3820 3822 3829 CONECT 3822 3817 3821 3827 CONECT 3823 3833 CONECT 3824 3836 CONECT 3825 3837 CONECT 3826 3818 CONECT 3827 3822 CONECT 3828 3829 3834 CONECT 3829 3821 3828 CONECT 3830 3831 3838 CONECT 3831 3830 3840 CONECT 3832 3838 3839 CONECT 3833 3823 3835 CONECT 3834 3828 3839 CONECT 3835 3820 3833 CONECT 3836 3824 3838 CONECT 3837 3825 3840 CONECT 3838 3830 3832 3836 CONECT 3839 3832 3834 3840 CONECT 3840 3831 3837 3839 MASTER 353 0 7 14 42 0 25 6 4031 2 144 36 END