data_3QMB # _entry.id 3QMB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QMB pdb_00003qmb 10.2210/pdb3qmb/pdb NDB NA0940 ? ? RCSB RCSB063824 ? ? WWPDB D_1000063824 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_struct_ref_seq_dif.details' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3QMB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-02-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QMC 'The same protein complexed with a different unmethylated CpG DNA.' unspecified PDB 3QMD 'The same protein complexed with a different unmethylated CpG DNA.' unspecified PDB 3QMG . unspecified PDB 3QMH . unspecified PDB 3QMI . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lam, R.' 1 'Xu, C.' 2 'Bian, C.B.' 3 'Kania, J.' 4 'Bountra, C.' 5 'Weigelt, J.' 6 'Arrowsmith, C.H.' 7 'Edwards, A.M.' 8 'Bochkarev, A.' 9 'Min, J.' 10 'Structural Genomics Consortium (SGC)' 11 # _citation.id primary _citation.title 'The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain.' _citation.journal_abbrev 'Nat Commun' _citation.journal_volume 2 _citation.page_first 227 _citation.page_last 227 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2041-1723 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21407193 _citation.pdbx_database_id_DOI 10.1038/ncomms1237 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, C.' 1 ? primary 'Bian, C.' 2 ? primary 'Lam, R.' 3 ? primary 'Dong, A.' 4 ? primary 'Min, J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CpG-binding protein' 9527.962 1 ? ? 'CXXC-type Zn finger, residues 161-222' ? 2 polymer syn "5'-D(*GP*CP*CP*AP*CP*CP*GP*GP*TP*GP*GP*C)-3'" 3664.380 2 ? ? 'DNA (nonmethylated CpG island)' ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CXXC-type zinc finger protein 1, PHD finger and CXXC domain-containing protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MHHHHHHSSRENLYFQGQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSS MHHHHHHSSRENLYFQGQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSS A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DA)(DC)(DC)(DG)(DG)(DT)(DG)(DG)(DC)' GCCACCGGTGGC B,C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'CALCIUM ION' CA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 ARG n 1 11 GLU n 1 12 ASN n 1 13 LEU n 1 14 TYR n 1 15 PHE n 1 16 GLN n 1 17 GLY n 1 18 GLN n 1 19 ILE n 1 20 LYS n 1 21 ARG n 1 22 SER n 1 23 ALA n 1 24 ARG n 1 25 MET n 1 26 CYS n 1 27 GLY n 1 28 GLU n 1 29 CYS n 1 30 GLU n 1 31 ALA n 1 32 CYS n 1 33 ARG n 1 34 ARG n 1 35 THR n 1 36 GLU n 1 37 ASP n 1 38 CYS n 1 39 GLY n 1 40 HIS n 1 41 CYS n 1 42 ASP n 1 43 PHE n 1 44 CYS n 1 45 ARG n 1 46 ASP n 1 47 MET n 1 48 LYS n 1 49 LYS n 1 50 PHE n 1 51 GLY n 1 52 GLY n 1 53 PRO n 1 54 ASN n 1 55 LYS n 1 56 ILE n 1 57 ARG n 1 58 GLN n 1 59 LYS n 1 60 CYS n 1 61 ARG n 1 62 LEU n 1 63 ARG n 1 64 GLN n 1 65 CYS n 1 66 GLN n 1 67 LEU n 1 68 ARG n 1 69 ALA n 1 70 ARG n 1 71 GLU n 1 72 SER n 1 73 TYR n 1 74 LYS n 1 75 TYR n 1 76 PHE n 1 77 PRO n 1 78 SER n 1 79 SER n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DC n 2 6 DC n 2 7 DG n 2 8 DG n 2 9 DT n 2 10 DG n 2 11 DG n 2 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CFP1, CGBP, CXXC1, PCCX1, PHF18' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-(DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA was purchased from Integrated DNA Technologies, Inc.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 148 ? ? ? A . n A 1 2 HIS 2 149 ? ? ? A . n A 1 3 HIS 3 150 ? ? ? A . n A 1 4 HIS 4 151 ? ? ? A . n A 1 5 HIS 5 152 ? ? ? A . n A 1 6 HIS 6 153 ? ? ? A . n A 1 7 HIS 7 154 ? ? ? A . n A 1 8 SER 8 155 ? ? ? A . n A 1 9 SER 9 156 ? ? ? A . n A 1 10 ARG 10 157 ? ? ? A . n A 1 11 GLU 11 158 ? ? ? A . n A 1 12 ASN 12 159 ? ? ? A . n A 1 13 LEU 13 160 ? ? ? A . n A 1 14 TYR 14 161 ? ? ? A . n A 1 15 PHE 15 162 ? ? ? A . n A 1 16 GLN 16 163 ? ? ? A . n A 1 17 GLY 17 164 ? ? ? A . n A 1 18 GLN 18 165 ? ? ? A . n A 1 19 ILE 19 166 ? ? ? A . n A 1 20 LYS 20 167 ? ? ? A . n A 1 21 ARG 21 168 168 ARG ARG A . n A 1 22 SER 22 169 169 SER SER A . n A 1 23 ALA 23 170 170 ALA ALA A . n A 1 24 ARG 24 171 171 ARG ARG A . n A 1 25 MET 25 172 172 MET MET A . n A 1 26 CYS 26 173 173 CYS CYS A . n A 1 27 GLY 27 174 174 GLY GLY A . n A 1 28 GLU 28 175 175 GLU GLU A . n A 1 29 CYS 29 176 176 CYS CYS A . n A 1 30 GLU 30 177 177 GLU GLU A . n A 1 31 ALA 31 178 178 ALA ALA A . n A 1 32 CYS 32 179 179 CYS CYS A . n A 1 33 ARG 33 180 180 ARG ARG A . n A 1 34 ARG 34 181 181 ARG ARG A . n A 1 35 THR 35 182 182 THR THR A . n A 1 36 GLU 36 183 183 GLU GLU A . n A 1 37 ASP 37 184 184 ASP ASP A . n A 1 38 CYS 38 185 185 CYS CYS A . n A 1 39 GLY 39 186 186 GLY GLY A . n A 1 40 HIS 40 187 187 HIS HIS A . n A 1 41 CYS 41 188 188 CYS CYS A . n A 1 42 ASP 42 189 189 ASP ASP A . n A 1 43 PHE 43 190 190 PHE PHE A . n A 1 44 CYS 44 191 191 CYS CYS A . n A 1 45 ARG 45 192 192 ARG ARG A . n A 1 46 ASP 46 193 193 ASP ASP A . n A 1 47 MET 47 194 194 MET MET A . n A 1 48 LYS 48 195 195 LYS LYS A . n A 1 49 LYS 49 196 196 LYS LYS A . n A 1 50 PHE 50 197 197 PHE PHE A . n A 1 51 GLY 51 198 198 GLY GLY A . n A 1 52 GLY 52 199 199 GLY GLY A . n A 1 53 PRO 53 200 200 PRO PRO A . n A 1 54 ASN 54 201 201 ASN ASN A . n A 1 55 LYS 55 202 202 LYS LYS A . n A 1 56 ILE 56 203 203 ILE ILE A . n A 1 57 ARG 57 204 204 ARG ARG A . n A 1 58 GLN 58 205 205 GLN GLN A . n A 1 59 LYS 59 206 206 LYS LYS A . n A 1 60 CYS 60 207 207 CYS CYS A . n A 1 61 ARG 61 208 208 ARG ARG A . n A 1 62 LEU 62 209 209 LEU LEU A . n A 1 63 ARG 63 210 210 ARG ARG A . n A 1 64 GLN 64 211 211 GLN GLN A . n A 1 65 CYS 65 212 212 CYS CYS A . n A 1 66 GLN 66 213 213 GLN GLN A . n A 1 67 LEU 67 214 214 LEU LEU A . n A 1 68 ARG 68 215 215 ARG ARG A . n A 1 69 ALA 69 216 216 ALA ALA A . n A 1 70 ARG 70 217 217 ARG ARG A . n A 1 71 GLU 71 218 218 GLU GLU A . n A 1 72 SER 72 219 219 SER SER A . n A 1 73 TYR 73 220 220 TYR TYR A . n A 1 74 LYS 74 221 221 LYS LYS A . n A 1 75 TYR 75 222 ? ? ? A . n A 1 76 PHE 76 223 ? ? ? A . n A 1 77 PRO 77 224 ? ? ? A . n A 1 78 SER 78 225 ? ? ? A . n A 1 79 SER 79 226 ? ? ? A . n B 2 1 DG 1 1 1 DG G B . n B 2 2 DC 2 2 2 DC C B . n B 2 3 DC 3 3 3 DC C B . n B 2 4 DA 4 4 4 DA A B . n B 2 5 DC 5 5 5 DC C B . n B 2 6 DC 6 6 6 DC C B . n B 2 7 DG 7 7 7 DG G B . n B 2 8 DG 8 8 8 DG G B . n B 2 9 DT 9 9 9 DT T B . n B 2 10 DG 10 10 10 DG G B . n B 2 11 DG 11 11 11 DG G B . n B 2 12 DC 12 12 12 DC C B . n C 2 1 DG 1 1 1 DG G C . n C 2 2 DC 2 2 2 DC C C . n C 2 3 DC 3 3 3 DC C C . n C 2 4 DA 4 4 4 DA A C . n C 2 5 DC 5 5 5 DC C C . n C 2 6 DC 6 6 6 DC C C . n C 2 7 DG 7 7 7 DG G C . n C 2 8 DG 8 8 8 DG G C . n C 2 9 DT 9 9 9 DT T C . n C 2 10 DG 10 10 10 DG G C . n C 2 11 DG 11 11 11 DG G C . n C 2 12 DC 12 12 12 DC C C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN 1 300 300 ZN ZN A . E 3 ZN 1 301 301 ZN ZN A . F 4 CA 1 13 1 CA CA B . G 5 HOH 1 5 5 HOH HOH A . G 5 HOH 2 7 7 HOH HOH A . G 5 HOH 3 8 8 HOH HOH A . G 5 HOH 4 12 12 HOH HOH A . G 5 HOH 5 13 13 HOH HOH A . G 5 HOH 6 16 16 HOH HOH A . G 5 HOH 7 17 17 HOH HOH A . G 5 HOH 8 18 18 HOH HOH A . H 5 HOH 1 14 1 HOH HOH B . H 5 HOH 2 15 15 HOH HOH B . H 5 HOH 3 16 2 HOH HOH B . H 5 HOH 4 17 3 HOH HOH B . H 5 HOH 5 18 11 HOH HOH B . I 5 HOH 1 13 4 HOH HOH C . I 5 HOH 2 14 14 HOH HOH C . I 5 HOH 3 15 6 HOH HOH C . I 5 HOH 4 16 9 HOH HOH C . I 5 HOH 5 17 10 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 168 ? CG ? A ARG 21 CG 2 1 Y 1 A ARG 168 ? CD ? A ARG 21 CD 3 1 Y 1 A ARG 168 ? NE ? A ARG 21 NE 4 1 Y 1 A ARG 168 ? CZ ? A ARG 21 CZ 5 1 Y 1 A ARG 168 ? NH1 ? A ARG 21 NH1 6 1 Y 1 A ARG 168 ? NH2 ? A ARG 21 NH2 7 1 Y 1 A SER 169 ? OG ? A SER 22 OG 8 1 Y 1 A GLU 177 ? CG ? A GLU 30 CG 9 1 Y 1 A GLU 177 ? CD ? A GLU 30 CD 10 1 Y 1 A GLU 177 ? OE1 ? A GLU 30 OE1 11 1 Y 1 A GLU 177 ? OE2 ? A GLU 30 OE2 12 1 Y 1 A LYS 195 ? CG ? A LYS 48 CG 13 1 Y 1 A LYS 195 ? CD ? A LYS 48 CD 14 1 Y 1 A LYS 195 ? CE ? A LYS 48 CE 15 1 Y 1 A LYS 195 ? NZ ? A LYS 48 NZ 16 1 Y 1 A LYS 202 ? CG ? A LYS 55 CG 17 1 Y 1 A LYS 202 ? CD ? A LYS 55 CD 18 1 Y 1 A LYS 202 ? CE ? A LYS 55 CE 19 1 Y 1 A LYS 202 ? NZ ? A LYS 55 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 4 DM 6.1 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 5 REFMAC refmac_5.5.0109 24/04/2001 program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 EPICS-based 'beamline control' ? ? ? ? 'data collection' ? ? ? 8 data 'acquisition systems' ? ? ? ? 'data collection' ? ? ? 9 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 10 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? # _cell.length_a 37.375 _cell.length_b 71.965 _cell.length_c 115.600 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3QMB _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3QMB _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3QMB _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M HEPES pH 7.5, 0.2M CaCl2, 28% PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-06-16 _diffrn_detector.details 'Rosenbaum-Rock high-resolution double-crystal monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double-crystal monochromator' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97904 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97904 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3QMB _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 50.000 _reflns.number_obs 10064 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_netI_over_sigmaI 13.900 _reflns.pdbx_chi_squared 1.251 _reflns.pdbx_redundancy 8.500 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.050 2.120 ? ? ? 0.506 ? ? 1.073 8.200 ? 982 99.600 ? 1 2.120 2.210 ? ? ? 0.329 ? ? 1.069 8.600 ? 989 99.900 ? 2 2.210 2.310 ? ? ? 0.272 ? ? 1.110 8.600 ? 976 100.000 ? 3 2.310 2.430 ? ? ? 0.186 ? ? 1.091 8.700 ? 995 100.000 ? 4 2.430 2.580 ? ? ? 0.128 ? ? 1.074 8.700 ? 997 100.000 ? 5 2.580 2.780 ? ? ? 0.092 ? ? 1.125 8.700 ? 995 100.000 ? 6 2.780 3.060 ? ? ? 0.066 ? ? 1.154 8.700 ? 999 100.000 ? 7 3.060 3.510 ? ? ? 0.052 ? ? 1.067 8.600 ? 1010 100.000 ? 8 3.510 4.420 ? ? ? 0.049 ? ? 1.157 8.400 ? 1034 100.000 ? 9 4.420 50.000 ? ? ? 0.033 ? ? 2.607 7.900 ? 1087 99.200 ? 10 # _refine.entry_id 3QMB _refine.ls_d_res_high 2.0600 _refine.ls_d_res_low 30.5500 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6000 _refine.ls_number_reflns_obs 10037 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2211 _refine.ls_R_factor_R_work 0.2204 _refine.ls_wR_factor_R_work 0.2360 _refine.ls_R_factor_R_free 0.2349 _refine.ls_wR_factor_R_free 0.2370 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 497 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 59.8974 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.5100 _refine.aniso_B[2][2] -0.3900 _refine.aniso_B[3][3] -0.1200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9520 _refine.correlation_coeff_Fo_to_Fc_free 0.9330 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1530 _refine.overall_SU_ML 0.1560 _refine.overall_SU_B 12.4460 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 97.860 _refine.B_iso_min 39.790 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 420 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 927 _refine_hist.d_res_high 2.0600 _refine_hist.d_res_low 30.5500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 968 0.010 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1396 1.709 2.579 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 53 5.453 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 23 31.868 20.435 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 81 15.839 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 21.093 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 148 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 581 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 266 0.570 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 414 1.085 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 702 1.825 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 982 2.838 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 2.109 2.056 733 95.498 661 0.265 39 0.271 . . . . . 'X-RAY DIFFRACTION' 20 2.167 2.109 708 99.859 672 0.259 35 0.384 . . . . . 'X-RAY DIFFRACTION' 20 2.229 2.167 699 99.857 665 0.243 33 0.321 . . . . . 'X-RAY DIFFRACTION' 20 2.297 2.229 661 100.000 628 0.251 33 0.294 . . . . . 'X-RAY DIFFRACTION' 20 2.372 2.297 659 100.000 617 0.258 42 0.269 . . . . . 'X-RAY DIFFRACTION' 20 2.455 2.372 625 100.000 596 0.266 29 0.338 . . . . . 'X-RAY DIFFRACTION' 20 2.547 2.455 618 100.000 588 0.255 30 0.303 . . . . . 'X-RAY DIFFRACTION' 20 2.650 2.547 585 100.000 561 0.243 24 0.303 . . . . . 'X-RAY DIFFRACTION' 20 2.767 2.650 564 100.000 534 0.245 30 0.336 . . . . . 'X-RAY DIFFRACTION' 20 2.901 2.767 557 100.000 532 0.252 25 0.203 . . . . . 'X-RAY DIFFRACTION' 20 3.057 2.901 508 100.000 493 0.238 15 0.173 . . . . . 'X-RAY DIFFRACTION' 20 3.240 3.057 489 100.000 465 0.212 24 0.203 . . . . . 'X-RAY DIFFRACTION' 20 3.461 3.240 467 100.000 446 0.168 21 0.218 . . . . . 'X-RAY DIFFRACTION' 20 3.734 3.461 439 100.000 407 0.212 32 0.231 . . . . . 'X-RAY DIFFRACTION' 20 4.085 3.734 402 100.000 375 0.193 27 0.187 . . . . . 'X-RAY DIFFRACTION' 20 4.556 4.085 372 100.000 362 0.179 10 0.138 . . . . . 'X-RAY DIFFRACTION' 20 5.242 4.556 329 100.000 312 0.216 17 0.265 . . . . . 'X-RAY DIFFRACTION' 20 6.373 5.242 281 100.000 266 0.215 15 0.155 . . . . . 'X-RAY DIFFRACTION' 20 8.823 6.373 230 100.000 221 0.233 9 0.107 . . . . . 'X-RAY DIFFRACTION' 20 30.547 8.823 151 96.689 139 0.245 7 0.333 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3QMB _struct.title 'Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QMB _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;Structural Genomics Consortium, SGC, CXXC-type Zn finger, DNA binding, unmethylated CpG motifs, nucleus speckle, DNA BINDING PROTEIN-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CXXC1_HUMAN Q9P0U4 1 QIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSS 161 ? 2 PDB 3QMB 3QMB 2 GCCACCGGTGGC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QMB A 18 ? 79 ? Q9P0U4 161 ? 222 ? 165 226 2 2 3QMB B 1 ? 12 ? 3QMB 1 ? 12 ? 1 12 3 2 3QMB C 1 ? 12 ? 3QMB 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QMB MET A 1 ? UNP Q9P0U4 ? ? 'expression tag' 148 1 1 3QMB HIS A 2 ? UNP Q9P0U4 ? ? 'expression tag' 149 2 1 3QMB HIS A 3 ? UNP Q9P0U4 ? ? 'expression tag' 150 3 1 3QMB HIS A 4 ? UNP Q9P0U4 ? ? 'expression tag' 151 4 1 3QMB HIS A 5 ? UNP Q9P0U4 ? ? 'expression tag' 152 5 1 3QMB HIS A 6 ? UNP Q9P0U4 ? ? 'expression tag' 153 6 1 3QMB HIS A 7 ? UNP Q9P0U4 ? ? 'expression tag' 154 7 1 3QMB SER A 8 ? UNP Q9P0U4 ? ? 'expression tag' 155 8 1 3QMB SER A 9 ? UNP Q9P0U4 ? ? 'expression tag' 156 9 1 3QMB ARG A 10 ? UNP Q9P0U4 ? ? 'expression tag' 157 10 1 3QMB GLU A 11 ? UNP Q9P0U4 ? ? 'expression tag' 158 11 1 3QMB ASN A 12 ? UNP Q9P0U4 ? ? 'expression tag' 159 12 1 3QMB LEU A 13 ? UNP Q9P0U4 ? ? 'expression tag' 160 13 1 3QMB TYR A 14 ? UNP Q9P0U4 ? ? 'expression tag' 161 14 1 3QMB PHE A 15 ? UNP Q9P0U4 ? ? 'expression tag' 162 15 1 3QMB GLN A 16 ? UNP Q9P0U4 ? ? 'expression tag' 163 16 1 3QMB GLY A 17 ? UNP Q9P0U4 ? ? 'expression tag' 164 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2640 ? 1 MORE -26 ? 1 'SSA (A^2)' 7040 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 41 ? MET A 47 ? CYS A 188 MET A 194 1 ? 7 HELX_P HELX_P2 2 LYS A 48 ? GLY A 51 ? LYS A 195 GLY A 198 5 ? 4 HELX_P HELX_P3 3 CYS A 60 ? GLN A 64 ? CYS A 207 GLN A 211 5 ? 5 HELX_P HELX_P4 4 ARG A 70 ? LYS A 74 ? ARG A 217 LYS A 221 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 26 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 173 A ZN 300 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc2 metalc ? ? A CYS 29 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 176 A ZN 300 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc3 metalc ? ? A CYS 32 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 179 A ZN 300 1_555 ? ? ? ? ? ? ? 2.437 ? ? metalc4 metalc ? ? A CYS 38 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 185 A ZN 301 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc5 metalc ? ? A CYS 41 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 188 A ZN 301 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc6 metalc ? ? A CYS 44 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 191 A ZN 301 1_555 ? ? ? ? ? ? ? 2.386 ? ? metalc7 metalc ? ? A CYS 60 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 207 A ZN 301 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc8 metalc ? ? A CYS 65 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 212 A ZN 300 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc9 metalc ? ? B DG 11 O6 ? ? ? 1_555 F CA . CA ? ? B DG 11 B CA 13 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc10 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 13 B HOH 14 1_555 ? ? ? ? ? ? ? 2.459 ? ? metalc11 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 13 B HOH 16 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc12 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 13 B HOH 17 1_555 ? ? ? ? ? ? ? 2.601 ? ? metalc13 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? B CA 13 C HOH 13 1_555 ? ? ? ? ? ? ? 2.542 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 26 ? A CYS 173 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 29 ? A CYS 176 ? 1_555 112.0 ? 2 SG ? A CYS 26 ? A CYS 173 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 32 ? A CYS 179 ? 1_555 116.1 ? 3 SG ? A CYS 29 ? A CYS 176 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 32 ? A CYS 179 ? 1_555 106.7 ? 4 SG ? A CYS 26 ? A CYS 173 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 65 ? A CYS 212 ? 1_555 105.0 ? 5 SG ? A CYS 29 ? A CYS 176 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 65 ? A CYS 212 ? 1_555 118.6 ? 6 SG ? A CYS 32 ? A CYS 179 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 65 ? A CYS 212 ? 1_555 98.2 ? 7 SG ? A CYS 38 ? A CYS 185 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 41 ? A CYS 188 ? 1_555 110.1 ? 8 SG ? A CYS 38 ? A CYS 185 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 44 ? A CYS 191 ? 1_555 118.3 ? 9 SG ? A CYS 41 ? A CYS 188 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 44 ? A CYS 191 ? 1_555 101.8 ? 10 SG ? A CYS 38 ? A CYS 185 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 60 ? A CYS 207 ? 1_555 109.3 ? 11 SG ? A CYS 41 ? A CYS 188 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 60 ? A CYS 207 ? 1_555 117.2 ? 12 SG ? A CYS 44 ? A CYS 191 ? 1_555 ZN ? E ZN . ? A ZN 301 ? 1_555 SG ? A CYS 60 ? A CYS 207 ? 1_555 100.1 ? 13 O6 ? B DG 11 ? B DG 11 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? H HOH . ? B HOH 14 ? 1_555 150.6 ? 14 O6 ? B DG 11 ? B DG 11 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? H HOH . ? B HOH 16 ? 1_555 90.2 ? 15 O ? H HOH . ? B HOH 14 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? H HOH . ? B HOH 16 ? 1_555 83.0 ? 16 O6 ? B DG 11 ? B DG 11 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? H HOH . ? B HOH 17 ? 1_555 82.2 ? 17 O ? H HOH . ? B HOH 14 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? H HOH . ? B HOH 17 ? 1_555 96.2 ? 18 O ? H HOH . ? B HOH 16 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? H HOH . ? B HOH 17 ? 1_555 163.1 ? 19 O6 ? B DG 11 ? B DG 11 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? I HOH . ? C HOH 13 ? 1_555 70.2 ? 20 O ? H HOH . ? B HOH 14 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? I HOH . ? C HOH 13 ? 1_555 139.0 ? 21 O ? H HOH . ? B HOH 16 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? I HOH . ? C HOH 13 ? 1_555 97.3 ? 22 O ? H HOH . ? B HOH 17 ? 1_555 CA ? F CA . ? B CA 13 ? 1_555 O ? I HOH . ? C HOH 13 ? 1_555 94.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 300 ? 4 'BINDING SITE FOR RESIDUE ZN A 300' AC2 Software A ZN 301 ? 5 'BINDING SITE FOR RESIDUE ZN A 301' AC3 Software B CA 13 ? 6 'BINDING SITE FOR RESIDUE CA B 13' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 26 ? CYS A 173 . ? 1_555 ? 2 AC1 4 CYS A 29 ? CYS A 176 . ? 1_555 ? 3 AC1 4 CYS A 32 ? CYS A 179 . ? 1_555 ? 4 AC1 4 CYS A 65 ? CYS A 212 . ? 1_555 ? 5 AC2 5 CYS A 38 ? CYS A 185 . ? 1_555 ? 6 AC2 5 GLY A 39 ? GLY A 186 . ? 1_555 ? 7 AC2 5 CYS A 41 ? CYS A 188 . ? 1_555 ? 8 AC2 5 CYS A 44 ? CYS A 191 . ? 1_555 ? 9 AC2 5 CYS A 60 ? CYS A 207 . ? 1_555 ? 10 AC3 6 DG B 10 ? DG B 10 . ? 1_555 ? 11 AC3 6 DG B 11 ? DG B 11 . ? 1_555 ? 12 AC3 6 HOH H . ? HOH B 14 . ? 1_555 ? 13 AC3 6 HOH H . ? HOH B 16 . ? 1_555 ? 14 AC3 6 HOH H . ? HOH B 17 . ? 1_555 ? 15 AC3 6 HOH I . ? HOH C 13 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 102.14 108.00 -5.86 0.70 N 2 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 110.35 108.30 2.05 0.30 N 3 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 103.39 108.00 -4.61 0.70 N 4 1 "O4'" C DC 3 ? ? "C1'" C DC 3 ? ? N1 C DC 3 ? ? 103.60 108.00 -4.40 0.70 N 5 1 "O4'" C DA 4 ? ? "C1'" C DA 4 ? ? N9 C DA 4 ? ? 103.30 108.00 -4.70 0.70 N 6 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 110.76 108.30 2.46 0.30 N 7 1 "O4'" C DG 10 ? ? "C1'" C DG 10 ? ? N9 C DG 10 ? ? 101.57 108.00 -6.43 0.70 N 8 1 "O4'" C DC 12 ? ? "C1'" C DC 12 ? ? N1 C DC 12 ? ? 110.98 108.30 2.68 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 169 ? ? -122.30 -167.16 2 1 CYS A 207 ? ? -37.80 132.98 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 6.5590 11.1440 20.4580 0.1635 0.1613 -0.0311 -0.0194 -0.0271 -0.0065 5.7929 2.8489 6.6538 0.4597 -0.0323 -2.5780 -0.1583 0.1087 0.0496 -0.2613 0.0289 0.0213 0.1939 -0.6137 0.0420 'X-RAY DIFFRACTION' 2 ? refined 9.3310 10.3990 7.3790 0.3657 0.1916 0.0687 -0.1870 0.0172 -0.0010 2.1524 10.6057 1.5864 3.0791 1.5403 0.0607 0.1765 -0.3498 0.1733 -0.1373 0.1711 0.4154 0.0490 -0.0974 0.1758 'X-RAY DIFFRACTION' 3 ? refined 8.2350 11.4110 6.5630 0.4868 0.3654 0.2651 -0.1595 -0.0435 0.0018 3.5780 4.6369 2.9449 3.1224 0.9485 0.9050 -0.0944 -0.2409 0.3353 -0.4101 0.4118 0.6237 -0.6611 -0.1680 0.2560 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -10 A 9999 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B -10 B 9999 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C -10 C 9999 ? . . . . ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.R_cullis_centric ISO_1 26.41 2.35 5833 1064 0.000 0.000 ANO_1 26.41 2.35 5829 0 0.510 0.000 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.R_cullis_centric ISO_1 26.41 9.80 59 46 0.000 0.000 ISO_1 9.80 7.18 109 53 0.000 0.000 ISO_1 7.18 5.94 145 56 0.000 0.000 ISO_1 5.94 5.17 175 48 0.000 0.000 ISO_1 5.17 4.65 205 55 0.000 0.000 ISO_1 4.65 4.25 224 58 0.000 0.000 ISO_1 4.25 3.94 242 49 0.000 0.000 ISO_1 3.94 3.69 259 53 0.000 0.000 ISO_1 3.69 3.49 292 57 0.000 0.000 ISO_1 3.49 3.31 305 49 0.000 0.000 ISO_1 3.31 3.16 313 53 0.000 0.000 ISO_1 3.16 3.03 340 60 0.000 0.000 ISO_1 3.03 2.91 324 51 0.000 0.000 ISO_1 2.91 2.80 389 53 0.000 0.000 ISO_1 2.80 2.71 362 52 0.000 0.000 ISO_1 2.71 2.62 403 60 0.000 0.000 ISO_1 2.62 2.55 397 52 0.000 0.000 ISO_1 2.55 2.48 420 55 0.000 0.000 ISO_1 2.48 2.41 435 45 0.000 0.000 ISO_1 2.41 2.35 435 59 0.000 0.000 ANO_1 26.41 9.80 57 0 0.273 0.000 ANO_1 9.80 7.18 109 0 0.228 0.000 ANO_1 7.18 5.94 145 0 0.238 0.000 ANO_1 5.94 5.17 175 0 0.290 0.000 ANO_1 5.17 4.65 205 0 0.329 0.000 ANO_1 4.65 4.25 224 0 0.373 0.000 ANO_1 4.25 3.94 242 0 0.466 0.000 ANO_1 3.94 3.69 259 0 0.529 0.000 ANO_1 3.69 3.49 292 0 0.535 0.000 ANO_1 3.49 3.31 305 0 0.620 0.000 ANO_1 3.31 3.16 313 0 0.583 0.000 ANO_1 3.16 3.03 340 0 0.553 0.000 ANO_1 3.03 2.91 324 0 0.572 0.000 ANO_1 2.91 2.80 389 0 0.631 0.000 ANO_1 2.80 2.71 362 0 0.700 0.000 ANO_1 2.71 2.62 403 0 0.732 0.000 ANO_1 2.62 2.55 397 0 0.817 0.000 ANO_1 2.55 2.48 420 0 0.872 0.000 ANO_1 2.48 2.41 434 0 0.910 0.000 ANO_1 2.41 2.35 434 0 0.930 0.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.Cartn_x _pdbx_phasing_MAD_set_site.Cartn_y _pdbx_phasing_MAD_set_site.Cartn_z _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.b_iso 1 ZN 33.560 42.827 25.820 1.19 54.25 2 ZN 19.971 49.789 23.158 1.03 51.33 3 ZN 5.698 3.936 112.682 0.12 36.51 # loop_ _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric 26.41 9.80 59 0.681 46 0.110 9.80 7.18 109 0.668 53 0.119 7.18 5.94 145 0.650 56 0.153 5.94 5.17 175 0.622 48 0.112 5.17 4.65 205 0.576 55 0.092 4.65 4.25 224 0.541 58 0.074 4.25 3.94 242 0.516 49 0.070 3.94 3.69 259 0.499 53 0.064 3.69 3.49 292 0.498 57 0.052 3.49 3.31 305 0.453 49 0.039 3.31 3.16 313 0.477 53 0.030 3.16 3.03 340 0.493 60 0.056 3.03 2.91 324 0.500 51 0.098 2.91 2.80 389 0.471 53 0.091 2.80 2.71 362 0.434 52 0.066 2.71 2.62 403 0.413 60 0.082 2.62 2.55 397 0.354 52 0.077 2.55 2.48 420 0.312 55 0.077 2.48 2.41 435 0.259 45 0.083 2.41 2.35 435 0.228 59 0.069 # _pdbx_phasing_dm.entry_id 3QMB _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 6897 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.780 100.000 56.600 ? ? ? 0.828 ? ? 505 4.550 5.780 55.700 ? ? ? 0.908 ? ? 501 3.960 4.550 59.200 ? ? ? 0.937 ? ? 507 3.590 3.960 56.600 ? ? ? 0.924 ? ? 507 3.320 3.590 58.600 ? ? ? 0.896 ? ? 509 3.110 3.320 62.600 ? ? ? 0.888 ? ? 503 2.950 3.110 59.600 ? ? ? 0.863 ? ? 503 2.820 2.950 61.500 ? ? ? 0.856 ? ? 510 2.710 2.820 62.800 ? ? ? 0.840 ? ? 507 2.610 2.710 65.000 ? ? ? 0.848 ? ? 507 2.530 2.610 69.100 ? ? ? 0.807 ? ? 504 2.460 2.530 68.800 ? ? ? 0.814 ? ? 505 2.350 2.460 72.900 ? ? ? 0.774 ? ? 829 # _phasing.method SAD # _phasing_MAD.entry_id 3QMB _phasing_MAD.pdbx_d_res_low 26.410 _phasing_MAD.pdbx_d_res_high 2.350 _phasing_MAD.pdbx_reflns_acentric 5833 _phasing_MAD.pdbx_fom_acentric 0.439 _phasing_MAD.pdbx_reflns_centric 1064 _phasing_MAD.pdbx_fom_centric 0.080 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 148 ? A MET 1 2 1 Y 1 A HIS 149 ? A HIS 2 3 1 Y 1 A HIS 150 ? A HIS 3 4 1 Y 1 A HIS 151 ? A HIS 4 5 1 Y 1 A HIS 152 ? A HIS 5 6 1 Y 1 A HIS 153 ? A HIS 6 7 1 Y 1 A HIS 154 ? A HIS 7 8 1 Y 1 A SER 155 ? A SER 8 9 1 Y 1 A SER 156 ? A SER 9 10 1 Y 1 A ARG 157 ? A ARG 10 11 1 Y 1 A GLU 158 ? A GLU 11 12 1 Y 1 A ASN 159 ? A ASN 12 13 1 Y 1 A LEU 160 ? A LEU 13 14 1 Y 1 A TYR 161 ? A TYR 14 15 1 Y 1 A PHE 162 ? A PHE 15 16 1 Y 1 A GLN 163 ? A GLN 16 17 1 Y 1 A GLY 164 ? A GLY 17 18 1 Y 1 A GLN 165 ? A GLN 18 19 1 Y 1 A ILE 166 ? A ILE 19 20 1 Y 1 A LYS 167 ? A LYS 20 21 1 Y 1 A TYR 222 ? A TYR 75 22 1 Y 1 A PHE 223 ? A PHE 76 23 1 Y 1 A PRO 224 ? A PRO 77 24 1 Y 1 A SER 225 ? A SER 78 25 1 Y 1 A SER 226 ? A SER 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DG OP3 O N N 159 DG P P N N 160 DG OP1 O N N 161 DG OP2 O N N 162 DG "O5'" O N N 163 DG "C5'" C N N 164 DG "C4'" C N R 165 DG "O4'" O N N 166 DG "C3'" C N S 167 DG "O3'" O N N 168 DG "C2'" C N N 169 DG "C1'" C N R 170 DG N9 N Y N 171 DG C8 C Y N 172 DG N7 N Y N 173 DG C5 C Y N 174 DG C6 C N N 175 DG O6 O N N 176 DG N1 N N N 177 DG C2 C N N 178 DG N2 N N N 179 DG N3 N N N 180 DG C4 C Y N 181 DG HOP3 H N N 182 DG HOP2 H N N 183 DG "H5'" H N N 184 DG "H5''" H N N 185 DG "H4'" H N N 186 DG "H3'" H N N 187 DG "HO3'" H N N 188 DG "H2'" H N N 189 DG "H2''" H N N 190 DG "H1'" H N N 191 DG H8 H N N 192 DG H1 H N N 193 DG H21 H N N 194 DG H22 H N N 195 DT OP3 O N N 196 DT P P N N 197 DT OP1 O N N 198 DT OP2 O N N 199 DT "O5'" O N N 200 DT "C5'" C N N 201 DT "C4'" C N R 202 DT "O4'" O N N 203 DT "C3'" C N S 204 DT "O3'" O N N 205 DT "C2'" C N N 206 DT "C1'" C N R 207 DT N1 N N N 208 DT C2 C N N 209 DT O2 O N N 210 DT N3 N N N 211 DT C4 C N N 212 DT O4 O N N 213 DT C5 C N N 214 DT C7 C N N 215 DT C6 C N N 216 DT HOP3 H N N 217 DT HOP2 H N N 218 DT "H5'" H N N 219 DT "H5''" H N N 220 DT "H4'" H N N 221 DT "H3'" H N N 222 DT "HO3'" H N N 223 DT "H2'" H N N 224 DT "H2''" H N N 225 DT "H1'" H N N 226 DT H3 H N N 227 DT H71 H N N 228 DT H72 H N N 229 DT H73 H N N 230 DT H6 H N N 231 GLN N N N N 232 GLN CA C N S 233 GLN C C N N 234 GLN O O N N 235 GLN CB C N N 236 GLN CG C N N 237 GLN CD C N N 238 GLN OE1 O N N 239 GLN NE2 N N N 240 GLN OXT O N N 241 GLN H H N N 242 GLN H2 H N N 243 GLN HA H N N 244 GLN HB2 H N N 245 GLN HB3 H N N 246 GLN HG2 H N N 247 GLN HG3 H N N 248 GLN HE21 H N N 249 GLN HE22 H N N 250 GLN HXT H N N 251 GLU N N N N 252 GLU CA C N S 253 GLU C C N N 254 GLU O O N N 255 GLU CB C N N 256 GLU CG C N N 257 GLU CD C N N 258 GLU OE1 O N N 259 GLU OE2 O N N 260 GLU OXT O N N 261 GLU H H N N 262 GLU H2 H N N 263 GLU HA H N N 264 GLU HB2 H N N 265 GLU HB3 H N N 266 GLU HG2 H N N 267 GLU HG3 H N N 268 GLU HE2 H N N 269 GLU HXT H N N 270 GLY N N N N 271 GLY CA C N N 272 GLY C C N N 273 GLY O O N N 274 GLY OXT O N N 275 GLY H H N N 276 GLY H2 H N N 277 GLY HA2 H N N 278 GLY HA3 H N N 279 GLY HXT H N N 280 HIS N N N N 281 HIS CA C N S 282 HIS C C N N 283 HIS O O N N 284 HIS CB C N N 285 HIS CG C Y N 286 HIS ND1 N Y N 287 HIS CD2 C Y N 288 HIS CE1 C Y N 289 HIS NE2 N Y N 290 HIS OXT O N N 291 HIS H H N N 292 HIS H2 H N N 293 HIS HA H N N 294 HIS HB2 H N N 295 HIS HB3 H N N 296 HIS HD1 H N N 297 HIS HD2 H N N 298 HIS HE1 H N N 299 HIS HE2 H N N 300 HIS HXT H N N 301 HOH O O N N 302 HOH H1 H N N 303 HOH H2 H N N 304 ILE N N N N 305 ILE CA C N S 306 ILE C C N N 307 ILE O O N N 308 ILE CB C N S 309 ILE CG1 C N N 310 ILE CG2 C N N 311 ILE CD1 C N N 312 ILE OXT O N N 313 ILE H H N N 314 ILE H2 H N N 315 ILE HA H N N 316 ILE HB H N N 317 ILE HG12 H N N 318 ILE HG13 H N N 319 ILE HG21 H N N 320 ILE HG22 H N N 321 ILE HG23 H N N 322 ILE HD11 H N N 323 ILE HD12 H N N 324 ILE HD13 H N N 325 ILE HXT H N N 326 LEU N N N N 327 LEU CA C N S 328 LEU C C N N 329 LEU O O N N 330 LEU CB C N N 331 LEU CG C N N 332 LEU CD1 C N N 333 LEU CD2 C N N 334 LEU OXT O N N 335 LEU H H N N 336 LEU H2 H N N 337 LEU HA H N N 338 LEU HB2 H N N 339 LEU HB3 H N N 340 LEU HG H N N 341 LEU HD11 H N N 342 LEU HD12 H N N 343 LEU HD13 H N N 344 LEU HD21 H N N 345 LEU HD22 H N N 346 LEU HD23 H N N 347 LEU HXT H N N 348 LYS N N N N 349 LYS CA C N S 350 LYS C C N N 351 LYS O O N N 352 LYS CB C N N 353 LYS CG C N N 354 LYS CD C N N 355 LYS CE C N N 356 LYS NZ N N N 357 LYS OXT O N N 358 LYS H H N N 359 LYS H2 H N N 360 LYS HA H N N 361 LYS HB2 H N N 362 LYS HB3 H N N 363 LYS HG2 H N N 364 LYS HG3 H N N 365 LYS HD2 H N N 366 LYS HD3 H N N 367 LYS HE2 H N N 368 LYS HE3 H N N 369 LYS HZ1 H N N 370 LYS HZ2 H N N 371 LYS HZ3 H N N 372 LYS HXT H N N 373 MET N N N N 374 MET CA C N S 375 MET C C N N 376 MET O O N N 377 MET CB C N N 378 MET CG C N N 379 MET SD S N N 380 MET CE C N N 381 MET OXT O N N 382 MET H H N N 383 MET H2 H N N 384 MET HA H N N 385 MET HB2 H N N 386 MET HB3 H N N 387 MET HG2 H N N 388 MET HG3 H N N 389 MET HE1 H N N 390 MET HE2 H N N 391 MET HE3 H N N 392 MET HXT H N N 393 PHE N N N N 394 PHE CA C N S 395 PHE C C N N 396 PHE O O N N 397 PHE CB C N N 398 PHE CG C Y N 399 PHE CD1 C Y N 400 PHE CD2 C Y N 401 PHE CE1 C Y N 402 PHE CE2 C Y N 403 PHE CZ C Y N 404 PHE OXT O N N 405 PHE H H N N 406 PHE H2 H N N 407 PHE HA H N N 408 PHE HB2 H N N 409 PHE HB3 H N N 410 PHE HD1 H N N 411 PHE HD2 H N N 412 PHE HE1 H N N 413 PHE HE2 H N N 414 PHE HZ H N N 415 PHE HXT H N N 416 PRO N N N N 417 PRO CA C N S 418 PRO C C N N 419 PRO O O N N 420 PRO CB C N N 421 PRO CG C N N 422 PRO CD C N N 423 PRO OXT O N N 424 PRO H H N N 425 PRO HA H N N 426 PRO HB2 H N N 427 PRO HB3 H N N 428 PRO HG2 H N N 429 PRO HG3 H N N 430 PRO HD2 H N N 431 PRO HD3 H N N 432 PRO HXT H N N 433 SER N N N N 434 SER CA C N S 435 SER C C N N 436 SER O O N N 437 SER CB C N N 438 SER OG O N N 439 SER OXT O N N 440 SER H H N N 441 SER H2 H N N 442 SER HA H N N 443 SER HB2 H N N 444 SER HB3 H N N 445 SER HG H N N 446 SER HXT H N N 447 THR N N N N 448 THR CA C N S 449 THR C C N N 450 THR O O N N 451 THR CB C N R 452 THR OG1 O N N 453 THR CG2 C N N 454 THR OXT O N N 455 THR H H N N 456 THR H2 H N N 457 THR HA H N N 458 THR HB H N N 459 THR HG1 H N N 460 THR HG21 H N N 461 THR HG22 H N N 462 THR HG23 H N N 463 THR HXT H N N 464 TYR N N N N 465 TYR CA C N S 466 TYR C C N N 467 TYR O O N N 468 TYR CB C N N 469 TYR CG C Y N 470 TYR CD1 C Y N 471 TYR CD2 C Y N 472 TYR CE1 C Y N 473 TYR CE2 C Y N 474 TYR CZ C Y N 475 TYR OH O N N 476 TYR OXT O N N 477 TYR H H N N 478 TYR H2 H N N 479 TYR HA H N N 480 TYR HB2 H N N 481 TYR HB3 H N N 482 TYR HD1 H N N 483 TYR HD2 H N N 484 TYR HE1 H N N 485 TYR HE2 H N N 486 TYR HH H N N 487 TYR HXT H N N 488 ZN ZN ZN N N 489 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TYR N CA sing N N 455 TYR N H sing N N 456 TYR N H2 sing N N 457 TYR CA C sing N N 458 TYR CA CB sing N N 459 TYR CA HA sing N N 460 TYR C O doub N N 461 TYR C OXT sing N N 462 TYR CB CG sing N N 463 TYR CB HB2 sing N N 464 TYR CB HB3 sing N N 465 TYR CG CD1 doub Y N 466 TYR CG CD2 sing Y N 467 TYR CD1 CE1 sing Y N 468 TYR CD1 HD1 sing N N 469 TYR CD2 CE2 doub Y N 470 TYR CD2 HD2 sing N N 471 TYR CE1 CZ doub Y N 472 TYR CE1 HE1 sing N N 473 TYR CE2 CZ sing Y N 474 TYR CE2 HE2 sing N N 475 TYR CZ OH sing N N 476 TYR OH HH sing N N 477 TYR OXT HXT sing N N 478 # _ndb_struct_conf_na.entry_id 3QMB _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 12 1_555 -0.369 -0.233 0.220 4.787 -6.813 -1.335 1 B_DG1:DC12_C B 1 ? C 12 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 -0.092 -0.132 0.118 -4.912 -9.636 -2.423 2 B_DC2:DG11_C B 2 ? C 11 ? 19 1 1 B DC 3 1_555 C DG 10 1_555 0.548 -0.165 0.115 1.392 -8.167 -2.825 3 B_DC3:DG10_C B 3 ? C 10 ? 19 1 1 B DA 4 1_555 C DT 9 1_555 0.037 -0.304 -0.023 -5.642 -9.188 1.621 4 B_DA4:DT9_C B 4 ? C 9 ? 20 1 1 B DC 5 1_555 C DG 8 1_555 0.186 -0.253 0.077 -3.552 -7.043 -2.483 5 B_DC5:DG8_C B 5 ? C 8 ? 19 1 1 B DC 6 1_555 C DG 7 1_555 0.225 -0.276 0.130 -5.710 -2.293 -1.458 6 B_DC6:DG7_C B 6 ? C 7 ? 19 1 1 B DG 7 1_555 C DC 6 1_555 -0.127 -0.219 0.112 -1.656 -12.437 -1.499 7 B_DG7:DC6_C B 7 ? C 6 ? 19 1 1 B DG 8 1_555 C DC 5 1_555 -0.335 -0.128 -0.083 -5.228 4.719 1.237 8 B_DG8:DC5_C B 8 ? C 5 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 -0.046 -0.111 -0.123 9.693 1.050 2.205 9 B_DT9:DA4_C B 9 ? C 4 ? 20 1 1 B DG 10 1_555 C DC 3 1_555 -0.362 -0.150 0.166 7.911 -13.806 -0.548 10 B_DG10:DC3_C B 10 ? C 3 ? 19 1 1 B DG 11 1_555 C DC 2 1_555 -0.370 -0.186 0.195 8.689 -9.338 0.427 11 B_DG11:DC2_C B 11 ? C 2 ? 19 1 1 B DC 12 1_555 C DG 1 1_555 0.492 -0.175 -0.016 0.753 -8.289 0.747 12 B_DC12:DG1_C B 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 12 1_555 B DC 2 1_555 C DG 11 1_555 -0.671 -0.396 3.532 -1.184 -1.278 36.046 -0.443 0.901 3.563 -2.063 1.912 36.087 1 BB_DG1DC2:DG11DC12_CC B 1 ? C 12 ? B 2 ? C 11 ? 1 B DC 2 1_555 C DG 11 1_555 B DC 3 1_555 C DG 10 1_555 -0.381 0.585 3.119 2.967 4.840 31.172 0.213 1.225 3.123 8.914 -5.465 31.672 2 BB_DC2DC3:DG10DG11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 B DC 3 1_555 C DG 10 1_555 B DA 4 1_555 C DT 9 1_555 0.383 2.331 3.441 0.354 -6.273 48.500 3.299 -0.436 3.138 -7.600 -0.428 48.881 3 BB_DC3DA4:DT9DG10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 B DA 4 1_555 C DT 9 1_555 B DC 5 1_555 C DG 8 1_555 0.247 -0.344 3.228 -1.497 3.488 26.724 -1.607 -0.903 3.140 7.497 3.217 26.988 4 BB_DA4DC5:DG8DT9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 B DC 5 1_555 C DG 8 1_555 B DC 6 1_555 C DG 7 1_555 0.368 -0.048 3.454 2.520 1.518 39.307 -0.262 -0.230 3.466 2.253 -3.740 39.413 5 BB_DC5DC6:DG7DG8_CC B 5 ? C 8 ? B 6 ? C 7 ? 1 B DC 6 1_555 C DG 7 1_555 B DG 7 1_555 C DC 6 1_555 -0.145 0.431 3.297 -0.670 5.929 37.633 -0.105 0.136 3.326 9.121 1.030 38.086 6 BB_DC6DG7:DC6DG7_CC B 6 ? C 7 ? B 7 ? C 6 ? 1 B DG 7 1_555 C DC 6 1_555 B DG 8 1_555 C DC 5 1_555 0.647 -0.231 3.482 1.781 -5.264 34.397 0.474 -0.789 3.506 -8.830 -2.988 34.830 7 BB_DG7DG8:DC5DC6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 B DG 8 1_555 C DC 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.483 0.120 3.090 2.223 4.179 26.032 -0.783 1.611 3.020 9.180 -4.884 26.452 8 BB_DG8DT9:DA4DC5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DG 10 1_555 C DC 3 1_555 -0.384 1.919 3.337 1.615 -2.843 46.453 2.666 0.621 3.206 -3.599 -2.045 46.561 9 BB_DT9DG10:DC3DA4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 B DG 10 1_555 C DC 3 1_555 B DG 11 1_555 C DC 2 1_555 0.675 0.620 3.219 -0.714 7.902 30.109 -0.366 -1.396 3.256 14.888 1.346 31.114 10 BB_DG10DG11:DC2DC3_CC B 10 ? C 3 ? B 11 ? C 2 ? 1 B DG 11 1_555 C DC 2 1_555 B DC 12 1_555 C DG 1 1_555 0.733 -0.325 3.483 2.020 0.216 34.327 -0.585 -0.902 3.517 0.365 -3.419 34.386 11 BB_DG11DC12:DG1DC2_CC B 11 ? C 2 ? B 12 ? C 1 ? # _atom_sites.entry_id 3QMB _atom_sites.fract_transf_matrix[1][1] 0.026756 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013896 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008651 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O P S ZN # loop_