HEADER ISOMERASE 04-FEB-11 3QMQ TITLE CRYSTAL STRUCTURE OF E. COLI LSRG COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOINDUCER-2 (AI-2) MODIFYING PROTEIN LSRG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 511145; SOURCE 4 STRAIN: K-12 MG1655; SOURCE 5 GENE: G2583_1883, LSRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS AI-2 MODIFYING PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.MILLER,C.RUSSELL REVDAT 3 13-SEP-23 3QMQ 1 SEQADV REVDAT 2 01-JUN-11 3QMQ 1 JRNL REVDAT 1 13-APR-11 3QMQ 0 JRNL AUTH J.C.MARQUES,P.LAMOSA,C.RUSSELL,R.VENTURA,C.MAYCOCK, JRNL AUTH 2 M.F.SEMMELHACK,S.T.MILLER,K.B.XAVIER JRNL TITL PROCESSING THE INTERSPECIES QUORUM-SENSING SIGNAL JRNL TITL 2 AUTOINDUCER-2 (AI-2): CHARACTERIZATION OF JRNL TITL 3 PHOSPHO-(S)-4,5-DIHYDROXY-2,3-PENTANEDIONE ISOMERIZATION BY JRNL TITL 4 LSRG PROTEIN. JRNL REF J.BIOL.CHEM. V. 286 18331 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21454635 JRNL DOI 10.1074/JBC.M111.230227 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 42865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2165 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.294 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3292 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4442 ; 1.969 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 5.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;33.912 ;24.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;16.444 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2532 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1958 ; 1.290 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3182 ; 2.131 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1334 ; 3.539 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1260 ; 5.637 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 96 REMARK 3 RESIDUE RANGE : A 97 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5182 -4.7975 -28.1369 REMARK 3 T TENSOR REMARK 3 T11: 0.0288 T22: 0.0106 REMARK 3 T33: 0.0100 T12: -0.0071 REMARK 3 T13: 0.0002 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.3886 L22: 0.6122 REMARK 3 L33: 1.5128 L12: 0.2230 REMARK 3 L13: 0.2314 L23: 0.2225 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: -0.0528 S13: -0.0367 REMARK 3 S21: -0.0447 S22: 0.0007 S23: -0.0243 REMARK 3 S31: 0.1731 S32: -0.0457 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 96 REMARK 3 RESIDUE RANGE : B 97 B 285 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5007 -19.7690 -3.3763 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: 0.0134 REMARK 3 T33: 0.0143 T12: 0.0003 REMARK 3 T13: 0.0085 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.3868 L22: 0.8519 REMARK 3 L33: 0.8562 L12: -0.1838 REMARK 3 L13: -0.2690 L23: 0.1978 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: 0.0333 S13: 0.0729 REMARK 3 S21: 0.0358 S22: 0.0242 S23: -0.0351 REMARK 3 S31: -0.0285 S32: -0.0267 S33: -0.0647 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -2 C 96 REMARK 3 RESIDUE RANGE : C 97 C 286 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7079 -32.5924 -9.0103 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.0165 REMARK 3 T33: 0.0136 T12: 0.0091 REMARK 3 T13: -0.0034 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.1667 L22: 0.2191 REMARK 3 L33: 0.6570 L12: 0.1385 REMARK 3 L13: -0.1965 L23: 0.1098 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0095 S13: 0.0449 REMARK 3 S21: 0.0569 S22: 0.0280 S23: 0.0002 REMARK 3 S31: 0.1013 S32: 0.0428 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -2 D 96 REMARK 3 RESIDUE RANGE : D 97 D 287 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4262 7.8428 -22.5922 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.0367 REMARK 3 T33: 0.0103 T12: -0.0149 REMARK 3 T13: -0.0046 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.2997 L22: 0.1384 REMARK 3 L33: 0.6830 L12: 0.1810 REMARK 3 L13: 0.2149 L23: -0.0231 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.0521 S13: -0.0580 REMARK 3 S21: -0.0595 S22: 0.0087 S23: 0.0027 REMARK 3 S31: -0.1065 S32: 0.0713 S33: 0.0062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42888 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.3 REMARK 200 STARTING MODEL: PDB ENTRY CODE 2GFF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.65 M NACITRATE, PH 6.5, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.69850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN D 47 O HOH D 142 1.95 REMARK 500 O ASN D 35 O HOH D 216 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG D 37 CG ARG D 37 CD -0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 86 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG D 86 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 38 59.20 -141.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 3QMQ A 1 96 UNP D3QT67 D3QT67_ECOCB 1 96 DBREF 3QMQ B 1 96 UNP D3QT67 D3QT67_ECOCB 1 96 DBREF 3QMQ C 1 96 UNP D3QT67 D3QT67_ECOCB 1 96 DBREF 3QMQ D 1 96 UNP D3QT67 D3QT67_ECOCB 1 96 SEQADV 3QMQ MET A -2 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ GLY A -1 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ SER A 0 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ MET B -2 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ GLY B -1 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ SER B 0 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ MET C -2 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ GLY C -1 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ SER C 0 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ MET D -2 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ GLY D -1 UNP D3QT67 EXPRESSION TAG SEQADV 3QMQ SER D 0 UNP D3QT67 EXPRESSION TAG SEQRES 1 A 99 MET GLY SER MET HIS VAL THR LEU VAL GLU ILE ASN VAL SEQRES 2 A 99 HIS GLU ASP LYS VAL ASP GLU PHE ILE GLU VAL PHE ARG SEQRES 3 A 99 GLN ASN HIS LEU GLY SER VAL GLN GLU GLU GLY ASN LEU SEQRES 4 A 99 ARG PHE ASP VAL LEU GLN ASP PRO GLU VAL ASN SER ARG SEQRES 5 A 99 PHE TYR ILE TYR GLU ALA TYR LYS ASP GLU ASP ALA VAL SEQRES 6 A 99 ALA PHE HIS LYS THR THR PRO HIS TYR LYS THR CYS VAL SEQRES 7 A 99 ALA LYS LEU GLU SER LEU MET THR GLY PRO ARG LYS LYS SEQRES 8 A 99 ARG LEU PHE ASN GLY LEU MET PRO SEQRES 1 B 99 MET GLY SER MET HIS VAL THR LEU VAL GLU ILE ASN VAL SEQRES 2 B 99 HIS GLU ASP LYS VAL ASP GLU PHE ILE GLU VAL PHE ARG SEQRES 3 B 99 GLN ASN HIS LEU GLY SER VAL GLN GLU GLU GLY ASN LEU SEQRES 4 B 99 ARG PHE ASP VAL LEU GLN ASP PRO GLU VAL ASN SER ARG SEQRES 5 B 99 PHE TYR ILE TYR GLU ALA TYR LYS ASP GLU ASP ALA VAL SEQRES 6 B 99 ALA PHE HIS LYS THR THR PRO HIS TYR LYS THR CYS VAL SEQRES 7 B 99 ALA LYS LEU GLU SER LEU MET THR GLY PRO ARG LYS LYS SEQRES 8 B 99 ARG LEU PHE ASN GLY LEU MET PRO SEQRES 1 C 99 MET GLY SER MET HIS VAL THR LEU VAL GLU ILE ASN VAL SEQRES 2 C 99 HIS GLU ASP LYS VAL ASP GLU PHE ILE GLU VAL PHE ARG SEQRES 3 C 99 GLN ASN HIS LEU GLY SER VAL GLN GLU GLU GLY ASN LEU SEQRES 4 C 99 ARG PHE ASP VAL LEU GLN ASP PRO GLU VAL ASN SER ARG SEQRES 5 C 99 PHE TYR ILE TYR GLU ALA TYR LYS ASP GLU ASP ALA VAL SEQRES 6 C 99 ALA PHE HIS LYS THR THR PRO HIS TYR LYS THR CYS VAL SEQRES 7 C 99 ALA LYS LEU GLU SER LEU MET THR GLY PRO ARG LYS LYS SEQRES 8 C 99 ARG LEU PHE ASN GLY LEU MET PRO SEQRES 1 D 99 MET GLY SER MET HIS VAL THR LEU VAL GLU ILE ASN VAL SEQRES 2 D 99 HIS GLU ASP LYS VAL ASP GLU PHE ILE GLU VAL PHE ARG SEQRES 3 D 99 GLN ASN HIS LEU GLY SER VAL GLN GLU GLU GLY ASN LEU SEQRES 4 D 99 ARG PHE ASP VAL LEU GLN ASP PRO GLU VAL ASN SER ARG SEQRES 5 D 99 PHE TYR ILE TYR GLU ALA TYR LYS ASP GLU ASP ALA VAL SEQRES 6 D 99 ALA PHE HIS LYS THR THR PRO HIS TYR LYS THR CYS VAL SEQRES 7 D 99 ALA LYS LEU GLU SER LEU MET THR GLY PRO ARG LYS LYS SEQRES 8 D 99 ARG LEU PHE ASN GLY LEU MET PRO FORMUL 5 HOH *288(H2 O) HELIX 1 1 HIS A 11 ASP A 13 5 3 HELIX 2 2 LYS A 14 VAL A 30 1 17 HELIX 3 3 ASP A 58 LYS A 66 1 9 HELIX 4 4 THR A 68 GLU A 79 1 12 HELIX 5 5 SER A 80 MET A 82 5 3 HELIX 6 6 HIS B 11 ASP B 13 5 3 HELIX 7 7 LYS B 14 VAL B 30 1 17 HELIX 8 8 ASP B 58 THR B 67 1 10 HELIX 9 9 THR B 68 GLU B 79 1 12 HELIX 10 10 HIS C 11 ASP C 13 5 3 HELIX 11 11 LYS C 14 VAL C 30 1 17 HELIX 12 12 ASP C 58 LYS C 66 1 9 HELIX 13 13 THR C 68 GLU C 79 1 12 HELIX 14 14 HIS D 11 ASP D 13 5 3 HELIX 15 15 LYS D 14 VAL D 30 1 17 HELIX 16 16 ASP D 58 LYS D 66 1 9 HELIX 17 17 THR D 68 GLU D 79 1 12 SHEET 1 A 9 MET A 1 ASN A 9 0 SHEET 2 A 9 ARG A 49 TYR A 56 -1 O PHE A 50 N ILE A 8 SHEET 3 A 9 ASN A 35 GLN A 42 -1 N LEU A 36 O ALA A 55 SHEET 4 A 9 LYS D 87 MET D 95 -1 O LEU D 94 N VAL A 40 SHEET 5 A 9 MET D 1 ASN D 9 -1 N LEU D 5 O ARG D 89 SHEET 6 A 9 ARG D 49 TYR D 56 -1 O TYR D 56 N HIS D 2 SHEET 7 A 9 ASN D 35 GLN D 42 -1 N LEU D 41 O TYR D 51 SHEET 8 A 9 LYS A 87 MET A 95 -1 N ASN A 92 O GLN D 42 SHEET 9 A 9 MET A 1 ASN A 9 -1 N MET A 1 O GLY A 93 SHEET 1 B 9 MET B 1 ASN B 9 0 SHEET 2 B 9 ARG B 49 TYR B 56 -1 O PHE B 50 N ILE B 8 SHEET 3 B 9 ASN B 35 GLN B 42 -1 N LEU B 36 O ALA B 55 SHEET 4 B 9 LYS C 87 MET C 95 -1 O ASN C 92 N GLN B 42 SHEET 5 B 9 MET C 1 ASN C 9 -1 N MET C 1 O GLY C 93 SHEET 6 B 9 ARG C 49 TYR C 56 -1 O TYR C 56 N HIS C 2 SHEET 7 B 9 ASN C 35 GLN C 42 -1 N LEU C 36 O ALA C 55 SHEET 8 B 9 LYS B 87 MET B 95 -1 N LEU B 94 O VAL C 40 SHEET 9 B 9 MET B 1 ASN B 9 -1 N GLU B 7 O LYS B 87 CISPEP 1 MET A 95 PRO A 96 0 0.13 CISPEP 2 MET B 95 PRO B 96 0 -0.19 CISPEP 3 MET C 95 PRO C 96 0 3.74 CISPEP 4 MET D 95 PRO D 96 0 -0.74 CRYST1 44.643 83.397 63.595 90.00 89.53 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022400 0.000000 -0.000185 0.00000 SCALE2 0.000000 0.011991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015725 0.00000