HEADER TRANSFERASE 08-FEB-11 3QN6 TITLE CRYSTAL STRUCTURES OF ESCHERICHIA COLI ASPARTATE AMINOTRANSFERASE TITLE 2 RECONSTITUTED WITH 1-DEAZA-PYRIDOXAL 5'-PHOSPHATE: INTERNAL ALDIMINE TITLE 3 AND STABLE L-ASPARTATE EXTERNAL ALDIMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPAT, TRANSAMINASE A; COMPND 5 EC: 2.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ASPC, B0928, JW0911; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MG204 KEYWDS AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.R.GRISWOLD REVDAT 4 15-NOV-23 3QN6 1 REMARK LINK ATOM REVDAT 3 20-JUL-11 3QN6 1 JRNL REVDAT 2 22-JUN-11 3QN6 1 COMPND DBREF REVDAT 1 15-JUN-11 3QN6 0 JRNL AUTH W.R.GRISWOLD,A.J.FISHER,M.D.TONEY JRNL TITL CRYSTAL STRUCTURES OF ASPARTATE AMINOTRANSFERASE JRNL TITL 2 RECONSTITUTED WITH 1-DEAZAPYRIDOXAL 5'-PHOSPHATE: INTERNAL JRNL TITL 3 ALDIMINE AND STABLE L-ASPARTATE EXTERNAL ALDIMINE. JRNL REF BIOCHEMISTRY V. 50 5918 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21627105 JRNL DOI 10.1021/BI200436Y REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 48759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2362 - 3.8549 0.93 4588 225 0.1526 0.1682 REMARK 3 2 3.8549 - 3.0603 0.98 4663 231 0.1397 0.1805 REMARK 3 3 3.0603 - 2.6736 1.00 4671 258 0.1384 0.1763 REMARK 3 4 2.6736 - 2.4292 1.00 4635 276 0.1349 0.1944 REMARK 3 5 2.4292 - 2.2552 1.00 4649 231 0.1392 0.1780 REMARK 3 6 2.2552 - 2.1222 1.00 4655 245 0.1424 0.1765 REMARK 3 7 2.1222 - 2.0159 1.00 4582 272 0.1546 0.2052 REMARK 3 8 2.0159 - 1.9282 1.00 4616 256 0.1816 0.2229 REMARK 3 9 1.9282 - 1.8540 1.00 4618 242 0.2128 0.2559 REMARK 3 10 1.8540 - 1.7900 1.00 4611 235 0.2596 0.3066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 55.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.15140 REMARK 3 B22 (A**2) : -2.44480 REMARK 3 B33 (A**2) : -0.70650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3292 REMARK 3 ANGLE : 1.486 4472 REMARK 3 CHIRALITY : 0.112 483 REMARK 3 PLANARITY : 0.007 591 REMARK 3 DIHEDRAL : 13.901 1216 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 13:54) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4575 22.6070 -13.8582 REMARK 3 T TENSOR REMARK 3 T11: 0.2401 T22: 0.3026 REMARK 3 T33: 0.2644 T12: -0.0960 REMARK 3 T13: -0.0153 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.0325 L22: 0.0911 REMARK 3 L33: 0.0377 L12: -0.0533 REMARK 3 L13: 0.0239 L23: -0.0652 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.0725 S13: 0.1330 REMARK 3 S21: -0.0787 S22: 0.1424 S23: -0.0951 REMARK 3 S31: -0.0925 S32: 0.1272 S33: 0.0157 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 55:330) REMARK 3 ORIGIN FOR THE GROUP (A): -45.0420 25.0705 -3.7423 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.1711 REMARK 3 T33: 0.1580 T12: 0.0063 REMARK 3 T13: 0.0209 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.5956 L22: 0.8408 REMARK 3 L33: 0.8370 L12: -0.1042 REMARK 3 L13: 0.1041 L23: 0.1545 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.1088 S13: 0.0720 REMARK 3 S21: 0.0646 S22: 0.0160 S23: 0.0232 REMARK 3 S31: -0.0940 S32: -0.0758 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 331:408) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2600 19.7802 5.4868 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.2602 REMARK 3 T33: 0.3082 T12: -0.0355 REMARK 3 T13: -0.0830 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.2447 L22: 0.2536 REMARK 3 L33: 0.3198 L12: 0.2064 REMARK 3 L13: 0.0207 L23: 0.1830 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.2862 S13: -0.1119 REMARK 3 S21: 0.0977 S22: -0.0192 S23: -0.3900 REMARK 3 S31: -0.0768 S32: 0.0866 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48807 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 39.574 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : 0.42800 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 L OF PROTEIN (15-20 MG/ML, 50 MM REMARK 280 TEA, PH 7.5, 100 MM KCL, 2 MM DTT, 10 M DEAZA-PLP) MIXED WITH 2 REMARK 280 L RESERVOIR BUFFER (53-60% SATURATED AMMONIUM SULFATE AND 50 MM REMARK 280 TEA, PH 7.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.57350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.57350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.37450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.33900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.37450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.33900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.57350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.37450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.33900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.57350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.37450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.33900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -84.74900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.57350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 747 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 25 CG1 CG2 CD1 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 155 O HOH A 704 2.12 REMARK 500 O HOH A 788 O HOH A 789 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 123.28 -38.44 REMARK 500 TYR A 161 -44.41 -150.53 REMARK 500 ARG A 266 73.22 65.46 REMARK 500 ASN A 294 -77.19 -111.28 REMARK 500 SER A 296 -55.83 78.57 REMARK 500 ASN A 347 -39.50 77.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 417 DBREF 3QN6 A 13 408 UNP P00509 AAT_ECOLI 1 396 SEQRES 1 A 396 MET PHE GLU ASN ILE THR ALA ALA PRO ALA ASP PRO ILE SEQRES 2 A 396 LEU GLY LEU ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO SEQRES 3 A 396 GLY LYS ILE ASN LEU GLY ILE GLY VAL TYR LYS ASP GLU SEQRES 4 A 396 THR GLY LYS THR PRO VAL LEU THR SER VAL LYS LYS ALA SEQRES 5 A 396 GLU GLN TYR LEU LEU GLU ASN GLU THR THR LYS ASN TYR SEQRES 6 A 396 LEU GLY ILE ASP GLY ILE PRO GLU PHE GLY ARG CYS THR SEQRES 7 A 396 GLN GLU LEU LEU PHE GLY LYS GLY SER ALA LEU ILE ASN SEQRES 8 A 396 ASP LYS ARG ALA ARG THR ALA GLN THR PRO GLY GLY THR SEQRES 9 A 396 GLY ALA LEU ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN SEQRES 10 A 396 THR SER VAL LYS ARG VAL TRP VAL SER ASN PRO SER TRP SEQRES 11 A 396 PRO ASN HIS LYS SER VAL PHE ASN SER ALA GLY LEU GLU SEQRES 12 A 396 VAL ARG GLU TYR ALA TYR TYR ASP ALA GLU ASN HIS THR SEQRES 13 A 396 LEU ASP PHE ASP ALA LEU ILE ASN SER LEU ASN GLU ALA SEQRES 14 A 396 GLN ALA GLY ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS SEQRES 15 A 396 ASN PRO THR GLY ILE ASP PRO THR LEU GLU GLN TRP GLN SEQRES 16 A 396 THR LEU ALA GLN LEU SER VAL GLU LYS GLY TRP LEU PRO SEQRES 17 A 396 LEU PHE ASP PHE ALA TYR GLN GLY PHE ALA ARG GLY LEU SEQRES 18 A 396 GLU GLU ASP ALA GLU GLY LEU ARG ALA PHE ALA ALA MET SEQRES 19 A 396 HIS LYS GLU LEU ILE VAL ALA SER SER TYR SER 3QN ASN SEQRES 20 A 396 PHE GLY LEU TYR ASN GLU ARG VAL GLY ALA CYS THR LEU SEQRES 21 A 396 VAL ALA ALA ASP SER GLU THR VAL ASP ARG ALA PHE SER SEQRES 22 A 396 GLN MET LYS ALA ALA ILE ARG ALA ASN TYR SER ASN PRO SEQRES 23 A 396 PRO ALA HIS GLY ALA SER VAL VAL ALA THR ILE LEU SER SEQRES 24 A 396 ASN ASP ALA LEU ARG ALA ILE TRP GLU GLN GLU LEU THR SEQRES 25 A 396 ASP MET ARG GLN ARG ILE GLN ARG MET ARG GLN LEU PHE SEQRES 26 A 396 VAL ASN THR LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SEQRES 27 A 396 SER PHE ILE ILE LYS GLN ASN GLY MET PHE SER PHE SER SEQRES 28 A 396 GLY LEU THR LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU SEQRES 29 A 396 PHE GLY VAL TYR ALA VAL ALA SER GLY ARG VAL ASN VAL SEQRES 30 A 396 ALA GLY MET THR PRO ASP ASN MET ALA PRO LEU CYS GLU SEQRES 31 A 396 ALA ILE VAL ALA VAL LEU MODRES 3QN6 3QN A 258 LYS HET 3QN A 258 24 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET SO4 A 413 5 HET EDO A 414 4 HET EDO A 415 4 HET EDO A 416 4 HET EDO A 417 4 HETNAM 3QN (E)-N~6~-{2-HYDROXY-3-METHYL-6-[(PHOSPHONOOXY) HETNAM 2 3QN METHYL]BENZYLIDENE}-L-LYSINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 3QN C15 H23 N2 O7 P FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 11 HOH *396(H2 O) HELIX 1 1 ASP A 23 ASP A 35 1 13 HELIX 2 2 LEU A 58 GLU A 72 1 15 HELIX 3 3 ILE A 83 GLY A 96 1 14 HELIX 4 4 SER A 99 ASP A 104 1 6 HELIX 5 5 PRO A 113 THR A 130 1 18 HELIX 6 6 PRO A 143 ALA A 152 1 10 HELIX 7 7 ASP A 170 ASN A 179 1 10 HELIX 8 8 THR A 202 GLY A 217 1 16 HELIX 9 9 GLY A 232 ALA A 237 1 6 HELIX 10 10 ALA A 237 HIS A 247 1 11 HELIX 11 11 LEU A 262 ARG A 266 5 5 HELIX 12 12 ASP A 276 ALA A 293 1 18 HELIX 13 13 PRO A 299 SER A 311 1 13 HELIX 14 14 ASN A 312 LYS A 344 1 33 HELIX 15 15 SER A 351 GLN A 356 1 6 HELIX 16 16 THR A 366 GLY A 378 1 13 HELIX 17 17 ALA A 390 MET A 392 5 3 HELIX 18 18 ASN A 396 LEU A 408 1 13 SHEET 1 A 2 ILE A 41 ASN A 42 0 SHEET 2 A 2 VAL A 379 TYR A 380 1 O TYR A 380 N ILE A 41 SHEET 1 B 7 ALA A 107 THR A 112 0 SHEET 2 B 7 GLY A 268 VAL A 273 -1 O LEU A 272 N ARG A 108 SHEET 3 B 7 LEU A 250 SER A 255 -1 N SER A 254 O ALA A 269 SHEET 4 B 7 LEU A 219 PHE A 224 1 N PHE A 222 O ALA A 253 SHEET 5 B 7 VAL A 186 HIS A 190 1 N PHE A 189 O ASP A 223 SHEET 6 B 7 ARG A 134 ASN A 139 1 N TRP A 136 O LEU A 188 SHEET 7 B 7 GLU A 155 ALA A 160 1 O GLU A 155 N VAL A 135 SHEET 1 C 2 TYR A 162 ASP A 163 0 SHEET 2 C 2 THR A 168 LEU A 169 -1 O THR A 168 N ASP A 163 SHEET 1 D 2 PHE A 360 PHE A 362 0 SHEET 2 D 2 ARG A 386 ASN A 388 -1 O VAL A 387 N SER A 361 LINK C 3QN A 258 N ASN A 259 1555 1555 1.34 CISPEP 1 ASN A 139 PRO A 140 0 2.52 CISPEP 2 ASN A 195 PRO A 196 0 19.11 SITE 1 AC1 5 ARG A 327 GLN A 328 HOH A 527 HOH A 786 SITE 2 AC1 5 HOH A 797 SITE 1 AC2 3 HOH A 11 PRO A 84 ARG A 88 SITE 1 AC3 5 LYS A 133 ARG A 134 ARG A 372 ALA A 406 SITE 2 AC3 5 HOH A 537 SITE 1 AC4 4 ARG A 108 LYS A 288 HOH A 477 HOH A 536 SITE 1 AC5 5 LYS A 146 ASN A 150 GLU A 155 VAL A 156 SITE 2 AC5 5 ARG A 157 SITE 1 AC6 5 GLY A 232 LEU A 233 GLU A 234 GLU A 235 SITE 2 AC6 5 HOH A 562 SITE 1 AC7 9 PRO A 84 GLY A 87 ARG A 88 GLN A 91 SITE 2 AC7 9 ARG A 108 THR A 109 HOH A 445 HOH A 548 SITE 3 AC7 9 HOH A 564 SITE 1 AC8 7 GLU A 65 LEU A 68 LEU A 69 GLU A 72 SITE 2 AC8 7 LYS A 75 HIS A 301 HOH A 455 SITE 1 AC9 6 TYR A 48 PRO A 56 3QN A 258 GLY A 261 SITE 2 AC9 6 TYR A 263 HOH A 752 CRYST1 84.749 154.678 79.147 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011800 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012635 0.00000