HEADER CHAPERONE/ANTIMICROBIAL PROTEIN 08-FEB-11 3QNJ TITLE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF E.COLI DNAK IN TITLE 2 COMPLEX WITH THE ANTIMICROBIAL PEPTIDE ONCOCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 389-607; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTIMICROBIAL PEPTIDE ONCOCIN; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAK, GROP, GRPF, SEG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ONCOPELTUS FASCIATUS; SOURCE 14 ORGANISM_TAXID: 7536; SOURCE 15 OTHER_DETAILS: THIS SEQUENCE IS DERIVED FROM ONCOPELTUS FASCIATUS SOURCE 16 AND OPTIMIZED FOR THE TREATMENT OF GRAM-NEGATIVE PATHOGENS KEYWDS PEPTIDE/PROTEIN BINDING, CHAPERONE-ANTIMICROBIAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,N.STRAETER REVDAT 5 21-FEB-24 3QNJ 1 REMARK REVDAT 4 08-NOV-17 3QNJ 1 REMARK REVDAT 3 11-MAY-11 3QNJ 1 JRNL REVDAT 2 30-MAR-11 3QNJ 1 HEADER KEYWDS REVDAT 1 23-MAR-11 3QNJ 0 JRNL AUTH D.KNAPPE,M.ZAHN,U.SAUER,G.SCHIFFER,N.STRATER,R.HOFFMANN JRNL TITL RATIONAL DESIGN OF ONCOCIN DERIVATIVES WITH SUPERIOR JRNL TITL 2 PROTEASE STABILITIES AND ANTIBACTERIAL ACTIVITIES BASED ON JRNL TITL 3 THE HIGH-RESOLUTION STRUCTURE OF THE ONCOCIN-DNAK COMPLEX. JRNL REF CHEMBIOCHEM V. 12 874 2011 JRNL REFN ISSN 1439-4227 JRNL PMID 21387510 JRNL DOI 10.1002/CBIC.201000792 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 24726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1713 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.91000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 3.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.333 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3477 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4714 ; 1.855 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.445 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;40.687 ;26.139 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 660 ;18.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.945 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2573 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2208 ; 0.771 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3576 ; 1.362 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1269 ; 2.678 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1129 ; 4.288 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 389 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2728 -31.7698 6.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.0951 REMARK 3 T33: 0.0463 T12: 0.0264 REMARK 3 T13: -0.0038 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 0.8745 L22: 0.7821 REMARK 3 L33: 4.1299 L12: -0.6392 REMARK 3 L13: 1.6663 L23: -1.0452 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: -0.1384 S13: 0.0735 REMARK 3 S21: 0.0001 S22: 0.0135 S23: -0.0235 REMARK 3 S31: 0.0026 S32: -0.1673 S33: 0.0525 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 420 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2655 -36.5213 0.2003 REMARK 3 T TENSOR REMARK 3 T11: 0.3628 T22: 0.3354 REMARK 3 T33: 0.2301 T12: 0.0221 REMARK 3 T13: -0.0167 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 20.2211 L22: 0.6843 REMARK 3 L33: 26.0498 L12: -0.6912 REMARK 3 L13: 20.6181 L23: -0.5990 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: -0.5172 S13: -0.7492 REMARK 3 S21: 0.0343 S22: 0.4774 S23: 0.0476 REMARK 3 S31: -1.3574 S32: -0.5098 S33: -0.4205 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 431 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2892 -31.4670 -7.2425 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: 0.1132 REMARK 3 T33: 0.0892 T12: 0.0082 REMARK 3 T13: 0.0323 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.6039 L22: 0.7245 REMARK 3 L33: 2.1097 L12: 0.2089 REMARK 3 L13: 1.8091 L23: 0.2569 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.1308 S13: -0.0552 REMARK 3 S21: -0.0564 S22: 0.0467 S23: -0.1194 REMARK 3 S31: 0.0106 S32: 0.0665 S33: -0.0606 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 454 A 473 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9856 -41.0725 -8.0513 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.1463 REMARK 3 T33: 0.2239 T12: -0.0287 REMARK 3 T13: -0.0245 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.0207 L22: 1.6490 REMARK 3 L33: 0.6135 L12: 0.7418 REMARK 3 L13: 0.6125 L23: -0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.1456 S12: -0.1217 S13: -0.2334 REMARK 3 S21: -0.0214 S22: -0.0016 S23: 0.0441 REMARK 3 S31: 0.1255 S32: -0.1271 S33: -0.1440 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 474 A 495 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7119 -44.3153 2.2122 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.0935 REMARK 3 T33: 0.1590 T12: -0.0240 REMARK 3 T13: 0.0202 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 8.0825 L22: 0.1792 REMARK 3 L33: 0.6038 L12: 0.8109 REMARK 3 L13: 1.6301 L23: 0.2506 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: -0.3269 S13: -0.6323 REMARK 3 S21: 0.0126 S22: 0.0246 S23: -0.1335 REMARK 3 S31: 0.0978 S32: -0.0813 S33: -0.0940 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 496 A 511 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8818 -38.8261 -0.2486 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.0848 REMARK 3 T33: 0.1641 T12: 0.0203 REMARK 3 T13: 0.0168 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 5.9612 L22: 0.6987 REMARK 3 L33: 1.4011 L12: 1.6915 REMARK 3 L13: 2.3634 L23: 0.9617 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: -0.0645 S13: -0.2761 REMARK 3 S21: -0.0671 S22: 0.0007 S23: -0.1050 REMARK 3 S31: -0.0275 S32: -0.0065 S33: -0.0627 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 512 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5671 -18.3644 0.9535 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.2263 REMARK 3 T33: 0.2286 T12: 0.0453 REMARK 3 T13: -0.0825 T23: -0.1016 REMARK 3 L TENSOR REMARK 3 L11: 0.3098 L22: 5.0718 REMARK 3 L33: 4.7990 L12: -0.6181 REMARK 3 L13: 1.0749 L23: -0.4199 REMARK 3 S TENSOR REMARK 3 S11: -0.2115 S12: -0.0713 S13: 0.0802 REMARK 3 S21: 0.3032 S22: 0.2199 S23: -0.3681 REMARK 3 S31: -0.6540 S32: -0.0256 S33: -0.0084 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 528 A 547 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4482 -21.7945 -11.6636 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.0754 REMARK 3 T33: 0.2539 T12: 0.0400 REMARK 3 T13: 0.0440 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 17.5404 L22: 3.5138 REMARK 3 L33: 2.0704 L12: 1.5113 REMARK 3 L13: 0.6102 L23: -2.3587 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.5064 S13: -0.0220 REMARK 3 S21: -0.0713 S22: -0.0310 S23: 0.2976 REMARK 3 S31: 0.2011 S32: 0.0399 S33: 0.0326 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 548 A 568 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4265 -20.7444 -24.8967 REMARK 3 T TENSOR REMARK 3 T11: 0.5359 T22: 0.9491 REMARK 3 T33: 1.1185 T12: 0.0579 REMARK 3 T13: -0.4748 T23: -0.1303 REMARK 3 L TENSOR REMARK 3 L11: 4.9851 L22: 6.9183 REMARK 3 L33: 9.5268 L12: -5.3617 REMARK 3 L13: 6.5542 L23: -6.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.8059 S12: -0.1969 S13: -0.7347 REMARK 3 S21: -0.8053 S22: 0.2416 S23: 1.0803 REMARK 3 S31: 1.2955 S32: -0.1588 S33: -1.0475 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 569 A 580 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1630 -16.5687 -19.5398 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.2665 REMARK 3 T33: 0.1278 T12: 0.0587 REMARK 3 T13: -0.0556 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 20.0024 L22: 6.2714 REMARK 3 L33: 5.5488 L12: -1.3447 REMARK 3 L13: 3.2778 L23: -2.4776 REMARK 3 S TENSOR REMARK 3 S11: -0.2328 S12: 1.7272 S13: -0.5530 REMARK 3 S21: -0.4417 S22: 0.1287 S23: 0.6178 REMARK 3 S31: -0.1204 S32: 0.2492 S33: 0.1042 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 581 A 598 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8229 -13.8609 -15.3971 REMARK 3 T TENSOR REMARK 3 T11: 0.2075 T22: 0.4258 REMARK 3 T33: 0.5068 T12: 0.1376 REMARK 3 T13: -0.0090 T23: 0.0895 REMARK 3 L TENSOR REMARK 3 L11: 20.1702 L22: 4.8529 REMARK 3 L33: 4.8883 L12: 1.0580 REMARK 3 L13: 9.4230 L23: 1.9643 REMARK 3 S TENSOR REMARK 3 S11: 0.3003 S12: -0.7972 S13: -0.2257 REMARK 3 S21: 0.0118 S22: -0.4263 S23: 0.9903 REMARK 3 S31: 0.0973 S32: -0.5980 S33: 0.1260 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 389 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2546 -29.1081 -28.2028 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: 0.1301 REMARK 3 T33: 0.0631 T12: 0.0139 REMARK 3 T13: 0.0189 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.5600 L22: 0.1419 REMARK 3 L33: 0.1945 L12: -0.2776 REMARK 3 L13: 0.0542 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: -0.1101 S13: -0.0244 REMARK 3 S21: -0.0020 S22: 0.0524 S23: 0.0115 REMARK 3 S31: -0.1829 S32: 0.0111 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 402 B 420 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2235 -19.6320 -22.1536 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.1368 REMARK 3 T33: 0.0767 T12: 0.0151 REMARK 3 T13: -0.0075 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 3.5736 L22: 2.0492 REMARK 3 L33: 2.5823 L12: -2.1381 REMARK 3 L13: -1.5358 L23: 2.0192 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: 0.1448 S13: 0.0800 REMARK 3 S21: 0.0067 S22: 0.1950 S23: 0.0220 REMARK 3 S31: -0.0514 S32: 0.2932 S33: -0.0854 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 421 B 431 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7750 -10.7141 -16.7978 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: 0.0514 REMARK 3 T33: 0.0914 T12: -0.0083 REMARK 3 T13: 0.0243 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.8064 L22: 6.7330 REMARK 3 L33: 5.0801 L12: 1.4158 REMARK 3 L13: 2.0112 L23: 3.0349 REMARK 3 S TENSOR REMARK 3 S11: -0.0796 S12: 0.1084 S13: 0.0056 REMARK 3 S21: -0.3011 S22: 0.0719 S23: -0.0511 REMARK 3 S31: -0.1970 S32: 0.2798 S33: 0.0076 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 432 B 469 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7448 -14.2172 -10.6726 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.0313 REMARK 3 T33: 0.0296 T12: 0.0224 REMARK 3 T13: 0.0302 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 3.0944 L22: 3.2426 REMARK 3 L33: 0.8944 L12: 2.1958 REMARK 3 L13: 1.1886 L23: 0.8747 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: -0.1850 S13: 0.0817 REMARK 3 S21: 0.2524 S22: -0.1160 S23: -0.0388 REMARK 3 S31: 0.0444 S32: -0.0197 S33: -0.0331 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 470 B 490 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1728 -22.2205 -17.8125 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1879 REMARK 3 T33: 0.1623 T12: 0.0401 REMARK 3 T13: -0.0124 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.3897 L22: 8.0063 REMARK 3 L33: 3.2718 L12: 3.7670 REMARK 3 L13: 2.0965 L23: 4.0847 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: 0.2330 S13: -0.0984 REMARK 3 S21: 0.2989 S22: 0.0796 S23: -0.5962 REMARK 3 S31: 0.1234 S32: 0.1544 S33: -0.2060 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 491 B 524 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7111 -24.0806 -17.7129 REMARK 3 T TENSOR REMARK 3 T11: 0.2157 T22: 0.2056 REMARK 3 T33: 0.2073 T12: 0.0264 REMARK 3 T13: 0.0286 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 3.0668 L22: 6.4791 REMARK 3 L33: 1.4352 L12: 1.3600 REMARK 3 L13: 0.0492 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.1027 S13: -0.5948 REMARK 3 S21: -0.0047 S22: 0.1942 S23: 0.1909 REMARK 3 S31: 0.1773 S32: -0.0727 S33: -0.2072 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 525 B 542 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8180 -3.0752 -15.4816 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.0700 REMARK 3 T33: 0.1618 T12: 0.0906 REMARK 3 T13: -0.0025 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 13.4885 L22: 11.6981 REMARK 3 L33: 10.9159 L12: 8.5724 REMARK 3 L13: 9.2531 L23: 8.0615 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.1549 S13: -0.0716 REMARK 3 S21: -0.0514 S22: 0.0874 S23: 0.2039 REMARK 3 S31: 0.0489 S32: 0.0521 S33: -0.0730 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 543 B 552 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8884 6.1331 0.2873 REMARK 3 T TENSOR REMARK 3 T11: 0.4608 T22: 0.9780 REMARK 3 T33: 0.4880 T12: 0.2771 REMARK 3 T13: -0.0335 T23: -0.2573 REMARK 3 L TENSOR REMARK 3 L11: 12.6916 L22: 14.1884 REMARK 3 L33: 14.2626 L12: 13.0224 REMARK 3 L13: -0.1320 L23: 3.2934 REMARK 3 S TENSOR REMARK 3 S11: 0.7012 S12: -1.2954 S13: -0.2484 REMARK 3 S21: 0.7512 S22: -0.9577 S23: -0.2251 REMARK 3 S31: 0.2582 S32: 1.2766 S33: 0.2565 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 556 B 580 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1943 7.7443 0.6456 REMARK 3 T TENSOR REMARK 3 T11: 0.3862 T22: 0.3549 REMARK 3 T33: 0.1596 T12: 0.2242 REMARK 3 T13: 0.0831 T23: -0.0979 REMARK 3 L TENSOR REMARK 3 L11: 4.0865 L22: 12.3323 REMARK 3 L33: 15.0263 L12: 4.2636 REMARK 3 L13: 3.9368 L23: 11.1836 REMARK 3 S TENSOR REMARK 3 S11: 0.1455 S12: -0.3760 S13: 0.0158 REMARK 3 S21: 1.2159 S22: 0.2371 S23: 0.1364 REMARK 3 S31: 0.6916 S32: 0.3185 S33: -0.3826 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 581 B 594 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4417 9.4698 -8.1721 REMARK 3 T TENSOR REMARK 3 T11: 0.3558 T22: 0.6878 REMARK 3 T33: 0.3437 T12: 0.2983 REMARK 3 T13: 0.0092 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 15.8901 L22: 2.0690 REMARK 3 L33: 8.4155 L12: 3.1175 REMARK 3 L13: 4.4293 L23: -2.2159 REMARK 3 S TENSOR REMARK 3 S11: -0.2388 S12: -0.5366 S13: 0.4331 REMARK 3 S21: 0.2044 S22: 0.0789 S23: 0.1068 REMARK 3 S31: -0.3226 S32: 0.1450 S33: 0.1600 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 595 B 602 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6383 18.1086 -1.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.8695 T22: 0.6537 REMARK 3 T33: 0.9763 T12: 0.1621 REMARK 3 T13: -0.2772 T23: -0.2658 REMARK 3 L TENSOR REMARK 3 L11: 41.1197 L22: 40.0379 REMARK 3 L33: 10.5132 L12: 7.1700 REMARK 3 L13: -20.3542 L23: -7.6643 REMARK 3 S TENSOR REMARK 3 S11: 1.8709 S12: 0.5576 S13: 2.1569 REMARK 3 S21: 0.3625 S22: -0.9746 S23: 0.0026 REMARK 3 S31: -0.8837 S32: -0.1457 S33: -0.8963 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6720 -32.1054 -7.7562 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.2436 REMARK 3 T33: 0.2120 T12: -0.0291 REMARK 3 T13: -0.0254 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 4.2935 L22: 20.7287 REMARK 3 L33: 24.0691 L12: 4.5042 REMARK 3 L13: 5.5854 L23: -4.5054 REMARK 3 S TENSOR REMARK 3 S11: -0.1048 S12: -0.0540 S13: 0.3511 REMARK 3 S21: -0.2863 S22: -0.2784 S23: 1.1311 REMARK 3 S31: -0.1061 S32: -1.0593 S33: 0.3831 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 13 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8846 -10.1742 -6.6584 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.0616 REMARK 3 T33: 0.0134 T12: 0.0046 REMARK 3 T13: 0.0228 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 14.8417 L22: 24.7009 REMARK 3 L33: 83.4118 L12: 3.6200 REMARK 3 L13: -7.5291 L23: -26.3960 REMARK 3 S TENSOR REMARK 3 S11: -0.0953 S12: -0.8126 S13: 0.1341 REMARK 3 S21: 1.6592 S22: -0.0337 S23: 0.2250 REMARK 3 S31: -1.2355 S32: -0.4665 S33: 0.1290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8943 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25775 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 0.1 M CITRIC REMARK 280 ACID, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K, PH 4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.83200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.56850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.83200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.56850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -44.62900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 551 REMARK 465 GLU A 552 REMARK 465 ALA A 553 REMARK 465 GLY A 554 REMARK 465 ASP A 555 REMARK 465 LYS A 556 REMARK 465 MET A 599 REMARK 465 GLU A 600 REMARK 465 ILE A 601 REMARK 465 ALA A 602 REMARK 465 GLN A 603 REMARK 465 GLN A 604 REMARK 465 GLN A 605 REMARK 465 HIS A 606 REMARK 465 ALA A 607 REMARK 465 ALA B 553 REMARK 465 GLY B 554 REMARK 465 ASP B 555 REMARK 465 GLN B 603 REMARK 465 GLN B 604 REMARK 465 GLN B 605 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 465 VAL C 1 REMARK 465 ASP C 2 REMARK 465 ARG C 11 REMARK 465 PRO C 12 REMARK 465 PRO C 13 REMARK 465 ARG C 14 REMARK 465 ORN C 15 REMARK 465 ILE C 16 REMARK 465 TYR C 17 REMARK 465 ASN C 18 REMARK 465 ORN C 19 REMARK 465 VAL D 1 REMARK 465 ASP D 2 REMARK 465 LYS D 3 REMARK 465 ARG D 14 REMARK 465 ORN D 15 REMARK 465 ILE D 16 REMARK 465 TYR D 17 REMARK 465 ASN D 18 REMARK 465 ORN D 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 408 CG - SD - CE ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 549 21.02 -74.42 REMARK 500 ASP A 560 10.68 -69.02 REMARK 500 LYS A 562 -3.00 -59.26 REMARK 500 LYS A 597 7.84 -68.68 REMARK 500 PRO D 12 152.37 -47.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 541 LEU A 542 145.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 20 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DKX RELATED DB: PDB REMARK 900 RELATED ID: 1DKY RELATED DB: PDB REMARK 900 RELATED ID: 1DKZ RELATED DB: PDB REMARK 900 RELATED ID: 3DPO RELATED DB: PDB REMARK 900 RELATED ID: 3DPP RELATED DB: PDB REMARK 900 RELATED ID: 3DPQ RELATED DB: PDB DBREF 3QNJ A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 3QNJ B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 3QNJ C 1 19 PDB 3QNJ 3QNJ 1 19 DBREF 3QNJ D 1 19 PDB 3QNJ 3QNJ 1 19 SEQRES 1 A 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 A 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 A 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 A 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 A 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 A 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 A 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 A 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 A 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 A 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 A 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 A 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 A 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 A 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 A 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 A 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 A 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 B 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 B 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 B 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 B 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 B 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 B 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 B 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 B 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 B 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 B 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 B 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 B 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 B 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 B 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 B 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 B 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 C 19 VAL ASP LYS PRO PRO TYR LEU PRO ARG PRO ARG PRO PRO SEQRES 2 C 19 ARG ORN ILE TYR ASN ORN SEQRES 1 D 19 VAL ASP LYS PRO PRO TYR LEU PRO ARG PRO ARG PRO PRO SEQRES 2 D 19 ARG ORN ILE TYR ASN ORN HET SO4 A 1 5 HET SO4 B 2 5 HET SO4 B 4 5 HET SO4 B 5 5 HET SO4 B 6 5 HET SO4 C 20 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *148(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 ASN A 508 ASN A 522 1 15 HELIX 3 3 ASN A 522 GLN A 549 1 28 HELIX 4 4 LYS A 562 LEU A 576 1 15 HELIX 5 5 ASP A 580 SER A 595 1 16 HELIX 6 6 ARG B 447 ASN B 451 5 5 HELIX 7 7 ASN B 508 ASN B 522 1 15 HELIX 8 8 ASN B 522 GLU B 552 1 31 HELIX 9 9 PRO B 558 GLY B 578 1 21 HELIX 10 10 ASP B 580 VAL B 594 1 15 HELIX 11 11 SER B 595 ALA B 602 1 8 SHEET 1 A 4 VAL A 407 ILE A 412 0 SHEET 2 A 4 LEU A 399 THR A 403 -1 N LEU A 399 O LEU A 411 SHEET 3 A 4 VAL A 436 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 A 4 LYS A 452 LEU A 459 -1 O LYS A 452 N GLN A 442 SHEET 1 B 4 THR A 420 PHE A 426 0 SHEET 2 B 4 ILE A 472 ILE A 478 -1 O PHE A 476 N HIS A 422 SHEET 3 B 4 LEU A 484 ASP A 490 -1 O HIS A 485 N ASP A 477 SHEET 4 B 4 GLU A 496 ILE A 501 -1 O ILE A 501 N LEU A 484 SHEET 1 C 2 VAL B 394 THR B 395 0 SHEET 2 C 2 THR B 416 THR B 417 -1 O THR B 416 N THR B 395 SHEET 1 D 4 VAL B 407 ILE B 412 0 SHEET 2 D 4 LEU B 399 THR B 403 -1 N THR B 403 O VAL B 407 SHEET 3 D 4 ALA B 435 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 D 4 LYS B 452 ASP B 460 -1 O PHE B 457 N ILE B 438 SHEET 1 E 5 GLU B 496 ILE B 501 0 SHEET 2 E 5 LEU B 484 ASP B 490 -1 N ALA B 488 O GLN B 497 SHEET 3 E 5 ILE B 472 ILE B 478 -1 N ASP B 477 O HIS B 485 SHEET 4 E 5 THR B 420 THR B 428 -1 N PHE B 426 O ILE B 472 SHEET 5 E 5 TYR D 6 LEU D 7 1 O LEU D 7 N SER B 427 CISPEP 1 ILE A 418 PRO A 419 0 2.15 CISPEP 2 ILE B 418 PRO B 419 0 3.92 SITE 1 AC1 5 HOH A 153 HOH A 165 LYS A 452 SER A 453 SITE 2 AC1 5 LYS B 452 SITE 1 AC2 3 HOH B 152 LYS B 502 SER B 504 SITE 1 AC3 4 ARG B 447 ARG B 536 LYS B 577 GLU B 579 SITE 1 AC4 4 GLU B 402 GLY B 405 GLY B 406 PRO D 8 SITE 1 AC5 3 ASP A 510 HOH B 120 ASN B 458 SITE 1 AC6 4 HOH A 119 MET A 404 GLY A 405 ARG C 9 CRYST1 77.664 161.137 44.629 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022407 0.00000