HEADER OXIDOREDUCTASE 09-FEB-11 3QNS TITLE DYPB FROM RHODOCOCCUS JOSTII RHA1, CRYSTAL FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYP PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS JOSTII RHA1; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 GENE: DYPB, RHA1_RO02407; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PEROXIDASE, LIGNAN, HEME, DYP, ENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.GRIGG,J.N.ROBERTS,R.SINGH,L.D.ELTIS,M.E.P.MURPHY REVDAT 4 21-FEB-24 3QNS 1 REMARK SEQADV REVDAT 3 08-NOV-17 3QNS 1 REMARK REVDAT 2 29-AUG-12 3QNS 1 JRNL VERSN REVDAT 1 27-APR-11 3QNS 0 JRNL AUTH J.N.ROBERTS,R.SINGH,J.C.GRIGG,M.E.MURPHY,T.D.BUGG,L.D.ELTIS JRNL TITL CHARACTERIZATION OF DYE-DECOLORIZING PEROXIDASES FROM JRNL TITL 2 RHODOCOCCUS JOSTII RHA1. JRNL REF BIOCHEMISTRY V. 50 5108 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21534572 JRNL DOI 10.1021/BI200427H REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 108165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 365 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2356 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2697 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3711 ; 1.420 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 5.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;26.995 ;24.065 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;10.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.043 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2144 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1679 ; 1.379 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2728 ; 2.237 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1018 ; 3.142 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 983 ; 4.458 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2697 ; 1.391 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3QNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL; ASYMMETRIC CUT REMARK 200 4.9650 DEG REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108171 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 93.972 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : 0.38700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26 M AMMONIUM SULFATE, 0.1 M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 63.84950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.86353 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.41400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 63.84950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 36.86353 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.41400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 63.84950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 36.86353 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.41400 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 63.84950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 36.86353 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.41400 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 63.84950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 36.86353 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.41400 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 63.84950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 36.86353 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.41400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 73.72705 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 118.82800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 73.72705 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 118.82800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 73.72705 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 118.82800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 73.72705 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 118.82800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 73.72705 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 118.82800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 73.72705 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 118.82800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -424.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -63.84950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 110.59058 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -127.69900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -127.69900 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 73.72705 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -59.41400 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 73.72705 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -59.41400 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 -63.84950 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 -36.86353 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -59.41400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 316 REMARK 465 PRO A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 ALA A 320 REMARK 465 GLU A 321 REMARK 465 SER A 322 REMARK 465 ALA A 323 REMARK 465 PRO A 324 REMARK 465 GLU A 325 REMARK 465 ASP A 326 REMARK 465 PRO A 327 REMARK 465 VAL A 328 REMARK 465 GLU A 329 REMARK 465 PRO A 330 REMARK 465 ALA A 331 REMARK 465 ALA A 332 REMARK 465 ALA A 333 REMARK 465 GLY A 334 REMARK 465 PRO A 335 REMARK 465 TYR A 336 REMARK 465 ASP A 337 REMARK 465 LEU A 338 REMARK 465 SER A 339 REMARK 465 LEU A 340 REMARK 465 LYS A 341 REMARK 465 ILE A 342 REMARK 465 GLY A 343 REMARK 465 GLY A 344 REMARK 465 LEU A 345 REMARK 465 LYS A 346 REMARK 465 GLY A 347 REMARK 465 VAL A 348 REMARK 465 SER A 349 REMARK 465 GLN A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MET A 191 O1 GOL A 357 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 143 -138.67 54.32 REMARK 500 ASP A 160 -129.21 54.68 REMARK 500 ASP A 245 48.80 -143.04 REMARK 500 ASP A 245 47.89 -143.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 351 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 226 NE2 REMARK 620 2 HEM A 351 NA 89.3 REMARK 620 3 HEM A 351 NB 88.9 90.6 REMARK 620 4 HEM A 351 NC 93.7 177.0 89.6 REMARK 620 5 HEM A 351 ND 93.7 88.9 177.3 90.8 REMARK 620 6 HOH A 507 O 171.2 86.8 83.3 90.2 94.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 358 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QNR RELATED DB: PDB DBREF 3QNS A 1 350 UNP Q0SE24 Q0SE24_RHOSR 1 350 SEQADV 3QNS GLY A -2 UNP Q0SE24 EXPRESSION TAG SEQADV 3QNS SER A -1 UNP Q0SE24 EXPRESSION TAG SEQADV 3QNS HIS A 0 UNP Q0SE24 EXPRESSION TAG SEQRES 1 A 353 GLY SER HIS MET PRO GLY PRO VAL ALA ARG LEU ALA PRO SEQRES 2 A 353 GLN ALA VAL LEU THR PRO PRO SER ALA ALA SER LEU PHE SEQRES 3 A 353 LEU VAL LEU VAL ALA GLY ASP SER ASP ASP ASP ARG ALA SEQRES 4 A 353 THR VAL CYS ASP VAL ILE SER GLY ILE ASP GLY PRO LEU SEQRES 5 A 353 LYS ALA VAL GLY PHE ARG GLU LEU ALA GLY SER LEU SER SEQRES 6 A 353 CYS VAL VAL GLY VAL GLY ALA GLN PHE TRP ASP ARG VAL SEQRES 7 A 353 SER ALA SER SER LYS PRO ALA HIS LEU HIS PRO PHE VAL SEQRES 8 A 353 PRO LEU SER GLY PRO VAL HIS SER ALA PRO SER THR PRO SEQRES 9 A 353 GLY ASP LEU LEU PHE HIS ILE LYS ALA ALA ARG LYS ASP SEQRES 10 A 353 LEU CYS PHE GLU LEU GLY ARG GLN ILE VAL SER ALA LEU SEQRES 11 A 353 GLY SER ALA ALA THR VAL VAL ASP GLU VAL HIS GLY PHE SEQRES 12 A 353 ARG TYR PHE ASP SER ARG ASP LEU LEU GLY PHE VAL ASP SEQRES 13 A 353 GLY THR GLU ASN PRO THR ASP ASP ASP ALA ALA ASP SER SEQRES 14 A 353 ALA LEU ILE GLY ASP GLU ASP PRO ASP PHE ARG GLY GLY SEQRES 15 A 353 SER TYR VAL ILE VAL GLN LYS TYR LEU HIS ASP MET SER SEQRES 16 A 353 ALA TRP ASN THR LEU SER THR GLU GLU GLN GLU ARG VAL SEQRES 17 A 353 ILE GLY ARG THR LYS LEU GLU ASN VAL GLU LEU ASP ASP SEQRES 18 A 353 ASP ALA GLN PRO SER ASN SER HIS VAL THR LEU ASN THR SEQRES 19 A 353 ILE VAL ASP ASP ASP GLY VAL GLU HIS ASP ILE LEU ARG SEQRES 20 A 353 ASP ASN MET ALA PHE GLY SER LEU GLY GLU ALA GLU TYR SEQRES 21 A 353 GLY THR TYR PHE ILE GLY TYR ALA LYS ASP PRO ALA VAL SEQRES 22 A 353 THR GLU LEU MET LEU ARG ARG MET PHE LEU GLY GLU PRO SEQRES 23 A 353 PRO GLY ASN TYR ASP ARG VAL LEU ASP PHE SER THR ALA SEQRES 24 A 353 ALA THR GLY THR LEU PHE PHE VAL PRO SER ARG ASP VAL SEQRES 25 A 353 LEU GLU SER LEU GLY ASP GLU PRO ALA GLY ALA GLU SER SEQRES 26 A 353 ALA PRO GLU ASP PRO VAL GLU PRO ALA ALA ALA GLY PRO SEQRES 27 A 353 TYR ASP LEU SER LEU LYS ILE GLY GLY LEU LYS GLY VAL SEQRES 28 A 353 SER GLN HET HEM A 351 43 HET SO4 A 352 5 HET SO4 A 353 10 HET GOL A 354 6 HET GOL A 355 6 HET GOL A 356 6 HET GOL A 357 6 HET GOL A 358 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *412(H2 O) HELIX 1 1 SER A 31 GLY A 44 1 14 HELIX 2 2 ILE A 45 PHE A 54 1 10 HELIX 3 3 GLY A 68 SER A 76 1 9 HELIX 4 4 ARG A 112 GLY A 128 1 17 HELIX 5 5 THR A 159 LEU A 168 1 10 HELIX 6 6 ASP A 173 ARG A 177 5 5 HELIX 7 7 ASP A 190 ASN A 195 1 6 HELIX 8 8 SER A 198 GLY A 207 1 10 HELIX 9 9 ASP A 217 GLN A 221 5 5 HELIX 10 10 SER A 225 ASN A 230 1 6 HELIX 11 11 ASP A 267 GLY A 281 1 15 HELIX 12 12 ASP A 288 ASP A 292 5 5 HELIX 13 13 SER A 306 LEU A 313 1 8 SHEET 1 A 4 SER A 62 VAL A 67 0 SHEET 2 A 4 LEU A 104 ALA A 110 -1 O HIS A 107 N VAL A 64 SHEET 3 A 4 ALA A 20 ALA A 28 -1 N LEU A 22 O ILE A 108 SHEET 4 A 4 ALA A 131 PHE A 140 -1 O VAL A 134 N VAL A 25 SHEET 1 B 2 LEU A 90 SER A 91 0 SHEET 2 B 2 SER A 96 ALA A 97 -1 O ALA A 97 N LEU A 90 SHEET 1 C 4 LEU A 243 ARG A 244 0 SHEET 2 C 4 GLU A 256 ALA A 265 -1 O TYR A 264 N LEU A 243 SHEET 3 C 4 SER A 180 HIS A 189 -1 N HIS A 189 O TYR A 257 SHEET 4 C 4 SER A 294 ALA A 296 -1 O THR A 295 N LEU A 188 SHEET 1 D 4 MET A 247 SER A 251 0 SHEET 2 D 4 GLU A 256 ALA A 265 -1 O TYR A 260 N MET A 247 SHEET 3 D 4 SER A 180 HIS A 189 -1 N HIS A 189 O TYR A 257 SHEET 4 D 4 THR A 300 VAL A 304 -1 O VAL A 304 N SER A 180 SHEET 1 E 2 ILE A 232 VAL A 233 0 SHEET 2 E 2 GLU A 239 HIS A 240 -1 O HIS A 240 N ILE A 232 LINK NE2 HIS A 226 FE HEM A 351 1555 1555 2.02 LINK FE HEM A 351 O HOH A 507 1555 1555 2.12 CISPEP 1 GLU A 282 PRO A 283 0 -9.73 SITE 1 AC1 26 ASP A 147 PHE A 151 VAL A 152 ASP A 153 SITE 2 AC1 26 GLY A 154 THR A 155 GLU A 156 GLN A 185 SITE 3 AC1 26 TYR A 187 HIS A 189 ARG A 208 HIS A 226 SITE 4 AC1 26 VAL A 227 ASN A 230 ARG A 244 PHE A 261 SITE 5 AC1 26 MET A 274 LEU A 275 MET A 278 SER A 294 SITE 6 AC1 26 HOH A 406 HOH A 420 HOH A 423 HOH A 473 SITE 7 AC1 26 HOH A 507 HOH A 561 SITE 1 AC2 8 LYS A 113 HIS A 138 HOH A 450 HOH A 466 SITE 2 AC2 8 HOH A 594 HOH A 637 HOH A 639 HOH A 659 SITE 1 AC3 9 GLU A 56 LEU A 57 ALA A 58 ARG A 112 SITE 2 AC3 9 ARG A 141 HOH A 378 HOH A 481 HOH A 518 SITE 3 AC3 9 HOH A 688 SITE 1 AC4 3 HIS A 240 PRO A 284 HOH A 698 SITE 1 AC5 12 ARG A 121 LEU A 148 LEU A 149 MET A 191 SITE 2 AC5 12 TRP A 194 ASN A 195 LYS A 210 LEU A 211 SITE 3 AC5 12 GLU A 212 HOH A 407 HOH A 475 HOH A 700 SITE 1 AC6 4 PRO A 222 SER A 223 ASN A 224 HOH A 571 SITE 1 AC7 9 HIS A 189 ASP A 190 MET A 191 SER A 192 SITE 2 AC7 9 ALA A 255 TYR A 257 HOH A 662 HOH A 744 SITE 3 AC7 9 HOH A 766 SITE 1 AC8 4 ASN A 224 ASN A 286 TYR A 287 HOH A 712 CRYST1 127.699 127.699 178.242 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007831 0.004521 0.000000 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005610 0.00000