data_3QOO # _entry.id 3QOO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3QOO RCSB RCSB063909 WWPDB D_1000063909 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC100778 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QOO _pdbx_database_status.recvd_initial_deposition_date 2011-02-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Michalska, K.' 1 'Li, H.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of hot-dog-like Taci_0573 protein from Thermanaerovibrio acidaminovorans' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Michalska, K.' 1 primary 'Li, H.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3QOO _cell.length_a 38.078 _cell.length_b 38.078 _cell.length_c 142.148 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QOO _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 15518.855 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 4 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)DFNELFPVGTYRR(MSE)VKKVSVSDTVTNRSKALEEF(MSE)STAAFLET(MSE)TQLAVEILDHKLPEGF VSVGVRSEVHNLAPAVLGDDVTFTVTVDRVEGNRVVLS(MSE)KADDPHGPVATGLQERVVVSTDLLEKRVWERFGGR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMDFNELFPVGTYRRMVKKVSVSDTVTNRSKALEEFMSTAAFLETMTQLAVEILDHKLPEGFVSVGVRSEVHNLAPAV LGDDVTFTVTVDRVEGNRVVLSMKADDPHGPVATGLQERVVVSTDLLEKRVWERFGGR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC100778 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ASP n 1 6 PHE n 1 7 ASN n 1 8 GLU n 1 9 LEU n 1 10 PHE n 1 11 PRO n 1 12 VAL n 1 13 GLY n 1 14 THR n 1 15 TYR n 1 16 ARG n 1 17 ARG n 1 18 MSE n 1 19 VAL n 1 20 LYS n 1 21 LYS n 1 22 VAL n 1 23 SER n 1 24 VAL n 1 25 SER n 1 26 ASP n 1 27 THR n 1 28 VAL n 1 29 THR n 1 30 ASN n 1 31 ARG n 1 32 SER n 1 33 LYS n 1 34 ALA n 1 35 LEU n 1 36 GLU n 1 37 GLU n 1 38 PHE n 1 39 MSE n 1 40 SER n 1 41 THR n 1 42 ALA n 1 43 ALA n 1 44 PHE n 1 45 LEU n 1 46 GLU n 1 47 THR n 1 48 MSE n 1 49 THR n 1 50 GLN n 1 51 LEU n 1 52 ALA n 1 53 VAL n 1 54 GLU n 1 55 ILE n 1 56 LEU n 1 57 ASP n 1 58 HIS n 1 59 LYS n 1 60 LEU n 1 61 PRO n 1 62 GLU n 1 63 GLY n 1 64 PHE n 1 65 VAL n 1 66 SER n 1 67 VAL n 1 68 GLY n 1 69 VAL n 1 70 ARG n 1 71 SER n 1 72 GLU n 1 73 VAL n 1 74 HIS n 1 75 ASN n 1 76 LEU n 1 77 ALA n 1 78 PRO n 1 79 ALA n 1 80 VAL n 1 81 LEU n 1 82 GLY n 1 83 ASP n 1 84 ASP n 1 85 VAL n 1 86 THR n 1 87 PHE n 1 88 THR n 1 89 VAL n 1 90 THR n 1 91 VAL n 1 92 ASP n 1 93 ARG n 1 94 VAL n 1 95 GLU n 1 96 GLY n 1 97 ASN n 1 98 ARG n 1 99 VAL n 1 100 VAL n 1 101 LEU n 1 102 SER n 1 103 MSE n 1 104 LYS n 1 105 ALA n 1 106 ASP n 1 107 ASP n 1 108 PRO n 1 109 HIS n 1 110 GLY n 1 111 PRO n 1 112 VAL n 1 113 ALA n 1 114 THR n 1 115 GLY n 1 116 LEU n 1 117 GLN n 1 118 GLU n 1 119 ARG n 1 120 VAL n 1 121 VAL n 1 122 VAL n 1 123 SER n 1 124 THR n 1 125 ASP n 1 126 LEU n 1 127 LEU n 1 128 GLU n 1 129 LYS n 1 130 ARG n 1 131 VAL n 1 132 TRP n 1 133 GLU n 1 134 ARG n 1 135 PHE n 1 136 GLY n 1 137 GLY n 1 138 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Taci_0573 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 6589' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermanaerovibrio acidaminovorans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 525903 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D1B956_THEAS _struct_ref.pdbx_db_accession D1B956 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDFNELFPVGTYRRMVKKVSVSDTVTNRSKALEEFMSTAAFLETMTQLAVEILDHKLPEGFVSVGVRSEVHNLAPAVLGD DVTFTVTVDRVEGNRVVLSMKADDPHGPVATGLQERVVVSTDLLEKRVWERFGGR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QOO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D1B956 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 135 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 135 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QOO SER A 1 ? UNP D1B956 ? ? 'EXPRESSION TAG' -2 1 1 3QOO ASN A 2 ? UNP D1B956 ? ? 'EXPRESSION TAG' -1 2 1 3QOO ALA A 3 ? UNP D1B956 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QOO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_percent_sol 35.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M MgCl2, 0.1 M sodium citrate, 40% PEG400, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-12-11 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791829 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791829 # _reflns.entry_id 3QOO _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.25 _reflns.number_obs 34179 _reflns.number_all 34231 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.138 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.6 _reflns.B_iso_Wilson_estimate 11.00 _reflns.pdbx_redundancy 10.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.27 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.582 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 5.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3QOO _refine.ls_number_reflns_obs 32906 _refine.ls_number_reflns_all 33976 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.38 _refine.ls_d_res_high 1.25 _refine.ls_percent_reflns_obs 99.45 _refine.ls_R_factor_obs 0.15670 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15594 _refine.ls_R_factor_R_free 0.18051 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.1 _refine.ls_number_reflns_R_free 1070 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.B_iso_mean 12.416 _refine.aniso_B[1][1] -0.38 _refine.aniso_B[2][2] -0.38 _refine.aniso_B[3][3] 0.57 _refine.aniso_B[1][2] -0.19 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. There is a strong positive peak in Fo-Fc electron density map near Lys126 most likely corresponding to a small ligand molecule but we were unable to unambiguously identify and model it. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model anisotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.048 _refine.pdbx_overall_ESU_R_Free 0.045 _refine.overall_SU_ML 0.028 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.384 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1053 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 1164 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 47.38 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1168 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 791 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.476 1.958 ? 1596 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.903 3.000 ? 1925 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.103 5.000 ? 153 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.165 23.214 ? 56 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.395 15.000 ? 205 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9.950 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.092 0.200 ? 184 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1354 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 250 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.663 1.500 ? 730 'X-RAY DIFFRACTION' ? r_mcbond_other 0.464 1.500 ? 293 'X-RAY DIFFRACTION' ? r_mcangle_it 2.671 2.000 ? 1202 'X-RAY DIFFRACTION' ? r_scbond_it 3.505 3.000 ? 438 'X-RAY DIFFRACTION' ? r_scangle_it 5.200 4.500 ? 394 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.345 3.000 ? 1959 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.251 _refine_ls_shell.d_res_low 1.284 _refine_ls_shell.number_reflns_R_work 2379 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 98.55 _refine_ls_shell.R_factor_R_free 0.345 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3QOO _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 3QOO _struct.title 'Crystal structure of hot-dog-like Taci_0573 protein from Thermanaerovibrio acidaminovorans' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QOO _struct_keywords.pdbx_keywords 'Structural genomics, Unknown function' _struct_keywords.text 'Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, hot-dog superfamily, Unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details 'THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 5 ? PHE A 10 ? ASP A 2 PHE A 7 1 ? 6 HELX_P HELX_P2 2 SER A 23 ? ARG A 31 ? SER A 20 ARG A 28 5 ? 9 HELX_P HELX_P3 3 SER A 32 ? GLU A 36 ? SER A 29 GLU A 33 5 ? 5 HELX_P HELX_P4 4 SER A 40 ? ASP A 57 ? SER A 37 ASP A 54 1 ? 18 HELX_P HELX_P5 5 HIS A 58 ? LEU A 60 ? HIS A 55 LEU A 57 5 ? 3 HELX_P HELX_P6 6 THR A 124 ? PHE A 135 ? THR A 121 PHE A 132 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 4 C ? ? ? 1_555 A ASP 5 N ? ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A ARG 17 C ? ? ? 1_555 A MSE 18 N ? ? A ARG 14 A MSE 15 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A MSE 18 C ? ? ? 1_555 A VAL 19 N ? ? A MSE 15 A VAL 16 1_555 ? ? ? ? ? ? ? 1.320 ? covale4 covale ? ? A PHE 38 C ? ? ? 1_555 A MSE 39 N ? ? A PHE 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.321 ? covale5 covale ? ? A MSE 39 C ? ? ? 1_555 A SER 40 N ? ? A MSE 36 A SER 37 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A THR 47 C ? ? ? 1_555 A MSE 48 N ? ? A THR 44 A MSE 45 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A MSE 48 C ? ? ? 1_555 A THR 49 N ? ? A MSE 45 A THR 46 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale ? ? A SER 102 C ? ? ? 1_555 A MSE 103 N ? ? A SER 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.323 ? covale9 covale ? ? A MSE 103 C ? ? ? 1_555 A LYS 104 N ? ? A MSE 100 A LYS 101 1_555 ? ? ? ? ? ? ? 1.327 ? metalc1 metalc ? ? B NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 136 A HOH 182 1_555 ? ? ? ? ? ? ? 2.356 ? metalc2 metalc ? ? A SER 25 OG ? ? ? 1_555 B NA . NA ? ? A SER 22 A NA 136 1_555 ? ? ? ? ? ? ? 2.384 ? metalc3 metalc ? ? B NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 136 A HOH 167 1_555 ? ? ? ? ? ? ? 2.400 ? metalc4 metalc ? ? B NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 136 A HOH 152 1_555 ? ? ? ? ? ? ? 2.453 ? metalc5 metalc ? ? A SER 23 OG ? ? ? 1_555 B NA . NA ? ? A SER 20 A NA 136 1_555 ? ? ? ? ? ? ? 2.457 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 15 ? LYS A 21 ? TYR A 12 LYS A 18 A 2 ASP A 84 ? GLU A 95 ? ASP A 81 GLU A 92 A 3 ARG A 98 ? ASP A 107 ? ARG A 95 ASP A 104 A 4 GLY A 110 ? SER A 123 ? GLY A 107 SER A 120 A 5 PHE A 64 ? ASN A 75 ? PHE A 61 ASN A 72 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MSE A 18 ? N MSE A 15 O PHE A 87 ? O PHE A 84 A 2 3 N ASP A 92 ? N ASP A 89 O VAL A 100 ? O VAL A 97 A 3 4 N ALA A 105 ? N ALA A 102 O VAL A 112 ? O VAL A 109 A 4 5 O GLU A 118 ? O GLU A 115 N VAL A 69 ? N VAL A 66 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE NA A 136' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 137' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 138' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 139' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CL A 140' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 23 ? SER A 20 . ? 1_555 ? 2 AC1 7 SER A 25 ? SER A 22 . ? 1_555 ? 3 AC1 7 GLU A 133 ? GLU A 130 . ? 1_545 ? 4 AC1 7 HOH G . ? HOH A 150 . ? 1_545 ? 5 AC1 7 HOH G . ? HOH A 152 . ? 1_555 ? 6 AC1 7 HOH G . ? HOH A 167 . ? 1_555 ? 7 AC1 7 HOH G . ? HOH A 182 . ? 1_555 ? 8 AC2 3 VAL A 24 ? VAL A 21 . ? 1_565 ? 9 AC2 3 ARG A 130 ? ARG A 127 . ? 1_555 ? 10 AC2 3 ARG A 134 ? ARG A 131 . ? 1_555 ? 11 AC3 3 VAL A 122 ? VAL A 119 . ? 1_555 ? 12 AC3 3 SER A 123 ? SER A 120 . ? 1_555 ? 13 AC3 3 ARG A 130 ? ARG A 127 . ? 1_555 ? 14 AC4 4 ARG A 70 ? ARG A 67 . ? 5_665 ? 15 AC4 4 ARG A 93 ? ARG A 90 . ? 5_665 ? 16 AC4 4 LEU A 116 ? LEU A 113 . ? 5_665 ? 17 AC4 4 ARG A 138 ? ARG A 135 . ? 1_555 ? 18 AC5 6 THR A 41 ? THR A 38 . ? 1_555 ? 19 AC5 6 GLY A 68 ? GLY A 65 . ? 5_555 ? 20 AC5 6 VAL A 69 ? VAL A 66 . ? 5_555 ? 21 AC5 6 ARG A 70 ? ARG A 67 . ? 5_555 ? 22 AC5 6 SER A 71 ? SER A 68 . ? 5_555 ? 23 AC5 6 ASN A 75 ? ASN A 72 . ? 1_555 ? # _database_PDB_matrix.entry_id 3QOO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QOO _atom_sites.fract_transf_matrix[1][1] 0.026262 _atom_sites.fract_transf_matrix[1][2] 0.015162 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030325 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007035 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ASP 5 2 2 ASP ASP A . n A 1 6 PHE 6 3 3 PHE PHE A . n A 1 7 ASN 7 4 4 ASN ASN A . n A 1 8 GLU 8 5 5 GLU GLU A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 PHE 10 7 7 PHE PHE A . n A 1 11 PRO 11 8 8 PRO PRO A . n A 1 12 VAL 12 9 9 VAL VAL A . n A 1 13 GLY 13 10 10 GLY GLY A . n A 1 14 THR 14 11 11 THR THR A . n A 1 15 TYR 15 12 12 TYR TYR A . n A 1 16 ARG 16 13 13 ARG ARG A . n A 1 17 ARG 17 14 14 ARG ARG A . n A 1 18 MSE 18 15 15 MSE MSE A . n A 1 19 VAL 19 16 16 VAL VAL A . n A 1 20 LYS 20 17 17 LYS LYS A . n A 1 21 LYS 21 18 18 LYS LYS A . n A 1 22 VAL 22 19 19 VAL VAL A . n A 1 23 SER 23 20 20 SER SER A . n A 1 24 VAL 24 21 21 VAL VAL A . n A 1 25 SER 25 22 22 SER SER A . n A 1 26 ASP 26 23 23 ASP ASP A . n A 1 27 THR 27 24 24 THR THR A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 THR 29 26 26 THR THR A . n A 1 30 ASN 30 27 27 ASN ASN A . n A 1 31 ARG 31 28 28 ARG ARG A . n A 1 32 SER 32 29 29 SER SER A . n A 1 33 LYS 33 30 30 LYS LYS A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 PHE 38 35 35 PHE PHE A . n A 1 39 MSE 39 36 36 MSE MSE A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 THR 41 38 38 THR THR A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 PHE 44 41 41 PHE PHE A . n A 1 45 LEU 45 42 42 LEU LEU A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 THR 47 44 44 THR THR A . n A 1 48 MSE 48 45 45 MSE MSE A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 GLN 50 47 47 GLN GLN A . n A 1 51 LEU 51 48 48 LEU LEU A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 GLU 54 51 51 GLU GLU A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 HIS 58 55 55 HIS HIS A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 PRO 61 58 58 PRO PRO A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 GLY 63 60 60 GLY GLY A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 VAL 65 62 62 VAL VAL A . n A 1 66 SER 66 63 63 SER SER A . n A 1 67 VAL 67 64 64 VAL VAL A . n A 1 68 GLY 68 65 65 GLY GLY A . n A 1 69 VAL 69 66 66 VAL VAL A . n A 1 70 ARG 70 67 67 ARG ARG A . n A 1 71 SER 71 68 68 SER SER A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 VAL 73 70 70 VAL VAL A . n A 1 74 HIS 74 71 71 HIS HIS A . n A 1 75 ASN 75 72 72 ASN ASN A . n A 1 76 LEU 76 73 73 LEU LEU A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 PRO 78 75 75 PRO PRO A . n A 1 79 ALA 79 76 76 ALA ALA A . n A 1 80 VAL 80 77 77 VAL VAL A . n A 1 81 LEU 81 78 78 LEU LEU A . n A 1 82 GLY 82 79 79 GLY GLY A . n A 1 83 ASP 83 80 80 ASP ASP A . n A 1 84 ASP 84 81 81 ASP ASP A . n A 1 85 VAL 85 82 82 VAL VAL A . n A 1 86 THR 86 83 83 THR THR A . n A 1 87 PHE 87 84 84 PHE PHE A . n A 1 88 THR 88 85 85 THR THR A . n A 1 89 VAL 89 86 86 VAL VAL A . n A 1 90 THR 90 87 87 THR THR A . n A 1 91 VAL 91 88 88 VAL VAL A . n A 1 92 ASP 92 89 89 ASP ASP A . n A 1 93 ARG 93 90 90 ARG ARG A . n A 1 94 VAL 94 91 91 VAL VAL A . n A 1 95 GLU 95 92 92 GLU GLU A . n A 1 96 GLY 96 93 93 GLY GLY A . n A 1 97 ASN 97 94 94 ASN ASN A . n A 1 98 ARG 98 95 95 ARG ARG A . n A 1 99 VAL 99 96 96 VAL VAL A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 LEU 101 98 98 LEU LEU A . n A 1 102 SER 102 99 99 SER SER A . n A 1 103 MSE 103 100 100 MSE MSE A . n A 1 104 LYS 104 101 101 LYS LYS A . n A 1 105 ALA 105 102 102 ALA ALA A . n A 1 106 ASP 106 103 103 ASP ASP A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 PRO 108 105 105 PRO PRO A . n A 1 109 HIS 109 106 106 HIS HIS A . n A 1 110 GLY 110 107 107 GLY GLY A . n A 1 111 PRO 111 108 108 PRO PRO A . n A 1 112 VAL 112 109 109 VAL VAL A . n A 1 113 ALA 113 110 110 ALA ALA A . n A 1 114 THR 114 111 111 THR THR A . n A 1 115 GLY 115 112 112 GLY GLY A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 GLN 117 114 114 GLN GLN A . n A 1 118 GLU 118 115 115 GLU GLU A . n A 1 119 ARG 119 116 116 ARG ARG A . n A 1 120 VAL 120 117 117 VAL VAL A . n A 1 121 VAL 121 118 118 VAL VAL A . n A 1 122 VAL 122 119 119 VAL VAL A . n A 1 123 SER 123 120 120 SER SER A . n A 1 124 THR 124 121 121 THR THR A . n A 1 125 ASP 125 122 122 ASP ASP A . n A 1 126 LEU 126 123 123 LEU LEU A . n A 1 127 LEU 127 124 124 LEU LEU A . n A 1 128 GLU 128 125 125 GLU GLU A . n A 1 129 LYS 129 126 126 LYS LYS A . n A 1 130 ARG 130 127 127 ARG ARG A . n A 1 131 VAL 131 128 128 VAL VAL A . n A 1 132 TRP 132 129 129 TRP TRP A . n A 1 133 GLU 133 130 130 GLU GLU A . n A 1 134 ARG 134 131 131 ARG ARG A . n A 1 135 PHE 135 132 132 PHE PHE A . n A 1 136 GLY 136 133 133 GLY GLY A . n A 1 137 GLY 137 134 134 GLY GLY A . n A 1 138 ARG 138 135 135 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 18 A MSE 15 ? MET SELENOMETHIONINE 3 A MSE 39 A MSE 36 ? MET SELENOMETHIONINE 4 A MSE 48 A MSE 45 ? MET SELENOMETHIONINE 5 A MSE 103 A MSE 100 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5260 ? 1 MORE -106 ? 1 'SSA (A^2)' 12690 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 47.3826666667 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 182 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 OG ? A SER 25 ? A SER 22 ? 1_555 91.8 ? 2 O ? G HOH . ? A HOH 182 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 O ? G HOH . ? A HOH 167 ? 1_555 93.0 ? 3 OG ? A SER 25 ? A SER 22 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 O ? G HOH . ? A HOH 167 ? 1_555 88.4 ? 4 O ? G HOH . ? A HOH 182 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 O ? G HOH . ? A HOH 152 ? 1_555 174.4 ? 5 OG ? A SER 25 ? A SER 22 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 O ? G HOH . ? A HOH 152 ? 1_555 87.2 ? 6 O ? G HOH . ? A HOH 167 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 O ? G HOH . ? A HOH 152 ? 1_555 92.6 ? 7 O ? G HOH . ? A HOH 182 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 OG ? A SER 23 ? A SER 20 ? 1_555 88.1 ? 8 OG ? A SER 25 ? A SER 22 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 OG ? A SER 23 ? A SER 20 ? 1_555 84.2 ? 9 O ? G HOH . ? A HOH 167 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 OG ? A SER 23 ? A SER 20 ? 1_555 172.6 ? 10 O ? G HOH . ? A HOH 152 ? 1_555 NA ? B NA . ? A NA 136 ? 1_555 OG ? A SER 23 ? A SER 20 ? 1_555 86.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-23 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELX 'model building' . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP/wARP 'model building' . ? 5 Coot 'model building' . ? 6 REFMAC refinement 5.5.0109 ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 SHELX phasing . ? 10 DM phasing . ? 11 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 29 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -161.20 _pdbx_validate_torsion.psi 113.04 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'CHLORIDE ION' CL 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 136 1 NA NA A . C 3 CL 1 137 1 CL CL A . D 3 CL 1 138 1 CL CL A . E 3 CL 1 139 1 CL CL A . F 3 CL 1 140 1 CL CL A . G 4 HOH 1 141 1 HOH HOH A . G 4 HOH 2 142 2 HOH HOH A . G 4 HOH 3 143 3 HOH HOH A . G 4 HOH 4 144 4 HOH HOH A . G 4 HOH 5 145 5 HOH HOH A . G 4 HOH 6 146 6 HOH HOH A . G 4 HOH 7 147 7 HOH HOH A . G 4 HOH 8 148 8 HOH HOH A . G 4 HOH 9 149 9 HOH HOH A . G 4 HOH 10 150 10 HOH HOH A . G 4 HOH 11 151 11 HOH HOH A . G 4 HOH 12 152 12 HOH HOH A . G 4 HOH 13 153 13 HOH HOH A . G 4 HOH 14 154 14 HOH HOH A . G 4 HOH 15 155 15 HOH HOH A . G 4 HOH 16 156 16 HOH HOH A . G 4 HOH 17 157 17 HOH HOH A . G 4 HOH 18 158 18 HOH HOH A . G 4 HOH 19 159 19 HOH HOH A . G 4 HOH 20 160 20 HOH HOH A . G 4 HOH 21 161 21 HOH HOH A . G 4 HOH 22 162 22 HOH HOH A . G 4 HOH 23 163 23 HOH HOH A . G 4 HOH 24 164 24 HOH HOH A . G 4 HOH 25 165 25 HOH HOH A . G 4 HOH 26 166 26 HOH HOH A . G 4 HOH 27 167 27 HOH HOH A . G 4 HOH 28 168 28 HOH HOH A . G 4 HOH 29 169 29 HOH HOH A . G 4 HOH 30 170 30 HOH HOH A . G 4 HOH 31 171 31 HOH HOH A . G 4 HOH 32 172 32 HOH HOH A . G 4 HOH 33 173 33 HOH HOH A . G 4 HOH 34 174 34 HOH HOH A . G 4 HOH 35 175 35 HOH HOH A . G 4 HOH 36 176 36 HOH HOH A . G 4 HOH 37 177 37 HOH HOH A . G 4 HOH 38 178 38 HOH HOH A . G 4 HOH 39 179 39 HOH HOH A . G 4 HOH 40 180 40 HOH HOH A . G 4 HOH 41 181 41 HOH HOH A . G 4 HOH 42 182 42 HOH HOH A . G 4 HOH 43 183 43 HOH HOH A . G 4 HOH 44 184 44 HOH HOH A . G 4 HOH 45 185 45 HOH HOH A . G 4 HOH 46 186 46 HOH HOH A . G 4 HOH 47 187 47 HOH HOH A . G 4 HOH 48 188 48 HOH HOH A . G 4 HOH 49 189 49 HOH HOH A . G 4 HOH 50 190 50 HOH HOH A . G 4 HOH 51 191 51 HOH HOH A . G 4 HOH 52 192 52 HOH HOH A . G 4 HOH 53 193 53 HOH HOH A . G 4 HOH 54 194 54 HOH HOH A . G 4 HOH 55 195 55 HOH HOH A . G 4 HOH 56 196 56 HOH HOH A . G 4 HOH 57 197 57 HOH HOH A . G 4 HOH 58 198 58 HOH HOH A . G 4 HOH 59 199 59 HOH HOH A . G 4 HOH 60 200 60 HOH HOH A . G 4 HOH 61 201 61 HOH HOH A . G 4 HOH 62 202 62 HOH HOH A . G 4 HOH 63 203 63 HOH HOH A . G 4 HOH 64 204 64 HOH HOH A . G 4 HOH 65 205 65 HOH HOH A . G 4 HOH 66 206 66 HOH HOH A . G 4 HOH 67 207 67 HOH HOH A . G 4 HOH 68 208 68 HOH HOH A . G 4 HOH 69 209 69 HOH HOH A . G 4 HOH 70 210 70 HOH HOH A . G 4 HOH 71 211 71 HOH HOH A . G 4 HOH 72 212 72 HOH HOH A . G 4 HOH 73 213 73 HOH HOH A . G 4 HOH 74 214 74 HOH HOH A . G 4 HOH 75 215 75 HOH HOH A . G 4 HOH 76 216 76 HOH HOH A . G 4 HOH 77 217 77 HOH HOH A . G 4 HOH 78 218 78 HOH HOH A . G 4 HOH 79 219 79 HOH HOH A . G 4 HOH 80 220 80 HOH HOH A . G 4 HOH 81 221 81 HOH HOH A . G 4 HOH 82 222 82 HOH HOH A . G 4 HOH 83 223 83 HOH HOH A . G 4 HOH 84 224 84 HOH HOH A . G 4 HOH 85 225 85 HOH HOH A . G 4 HOH 86 226 86 HOH HOH A . G 4 HOH 87 227 87 HOH HOH A . G 4 HOH 88 228 88 HOH HOH A . G 4 HOH 89 229 89 HOH HOH A . G 4 HOH 90 230 90 HOH HOH A . G 4 HOH 91 231 91 HOH HOH A . G 4 HOH 92 232 92 HOH HOH A . G 4 HOH 93 233 93 HOH HOH A . G 4 HOH 94 234 94 HOH HOH A . G 4 HOH 95 235 95 HOH HOH A . G 4 HOH 96 236 96 HOH HOH A . G 4 HOH 97 237 97 HOH HOH A . G 4 HOH 98 238 98 HOH HOH A . G 4 HOH 99 239 99 HOH HOH A . G 4 HOH 100 240 100 HOH HOH A . G 4 HOH 101 241 101 HOH HOH A . G 4 HOH 102 242 102 HOH HOH A . G 4 HOH 103 243 103 HOH HOH A . G 4 HOH 104 244 104 HOH HOH A . G 4 HOH 105 245 105 HOH HOH A . G 4 HOH 106 246 106 HOH HOH A . #