data_3QOQ # _entry.id 3QOQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QOQ pdb_00003qoq 10.2210/pdb3qoq/pdb NDB NA1352 ? ? RCSB RCSB063911 ? ? WWPDB D_1000063911 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-15 2 'Structure model' 1 1 2012-05-02 3 'Structure model' 1 2 2012-10-17 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_entry_details 6 5 'Structure model' pdbx_modification_feature 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.entry_id 3QOQ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-02-10 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pryor Jr., E.E.' 1 'Wozniak, D.J.' 2 'Hollis, T.' 3 # _citation.id primary _citation.title ;The Transcription Factor AmrZ Utilizes Multiple DNA Binding Modes to Recognize Activator and Repressor Sequences of Pseudomonas aeruginosa Virulence Genes. ; _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 8 _citation.page_first e1002648 _citation.page_last e1002648 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7366 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22511872 _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1002648 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pryor Jr., E.E.' 1 ? primary 'Waligora, E.A.' 2 ? primary 'Xu, B.' 3 ? primary 'Dellos-Nolan, S.' 4 ? primary 'Wozniak, D.J.' 5 ? primary 'Hollis, T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alginate and motility regulator Z' 7906.509 4 ? ? 'UNP residues 1-66' ? 2 polymer syn ;DNA (5'-D(*AP*CP*TP*GP*GP*CP*AP*AP*AP*AP*CP*GP*CP*CP*GP*GP*CP*A)-3') ; 5519.596 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*GP*CP*CP*GP*GP*CP*GP*TP*TP*TP*TP*GP*CP*CP*AP*GP*T)-3') ; 5514.550 1 ? ? ? ? 4 water nat water 18.015 7 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNA binding-protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;GPH(MSE)RPLKQATPTYSSRTADKFVVRLPEG(MSE)REQIAEVARSHHRS(MSE)NSEIIARLEQSLLQEGALQDNLG V ; GPHMRPLKQATPTYSSRTADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQSLLQEGALQDNLGV A,B,C,D ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DT)(DG)(DG)(DC)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DC)(DG)(DG)(DC)(DA)' ACTGGCAAAACGCCGGCA E ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DC)(DG)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DG)(DC)(DC)(DA)(DG)(DT)' TGCCGGCGTTTTGCCAGT F ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 MSE n 1 5 ARG n 1 6 PRO n 1 7 LEU n 1 8 LYS n 1 9 GLN n 1 10 ALA n 1 11 THR n 1 12 PRO n 1 13 THR n 1 14 TYR n 1 15 SER n 1 16 SER n 1 17 ARG n 1 18 THR n 1 19 ALA n 1 20 ASP n 1 21 LYS n 1 22 PHE n 1 23 VAL n 1 24 VAL n 1 25 ARG n 1 26 LEU n 1 27 PRO n 1 28 GLU n 1 29 GLY n 1 30 MSE n 1 31 ARG n 1 32 GLU n 1 33 GLN n 1 34 ILE n 1 35 ALA n 1 36 GLU n 1 37 VAL n 1 38 ALA n 1 39 ARG n 1 40 SER n 1 41 HIS n 1 42 HIS n 1 43 ARG n 1 44 SER n 1 45 MSE n 1 46 ASN n 1 47 SER n 1 48 GLU n 1 49 ILE n 1 50 ILE n 1 51 ALA n 1 52 ARG n 1 53 LEU n 1 54 GLU n 1 55 GLN n 1 56 SER n 1 57 LEU n 1 58 LEU n 1 59 GLN n 1 60 GLU n 1 61 GLY n 1 62 ALA n 1 63 LEU n 1 64 GLN n 1 65 ASP n 1 66 ASN n 1 67 LEU n 1 68 GLY n 1 69 VAL n 2 1 DA n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DC n 2 7 DA n 2 8 DA n 2 9 DA n 2 10 DA n 2 11 DC n 2 12 DG n 2 13 DC n 2 14 DC n 2 15 DG n 2 16 DG n 2 17 DC n 2 18 DA n 3 1 DT n 3 2 DG n 3 3 DC n 3 4 DC n 3 5 DG n 3 6 DG n 3 7 DC n 3 8 DG n 3 9 DT n 3 10 DT n 3 11 DT n 3 12 DT n 3 13 DG n 3 14 DC n 3 15 DC n 3 16 DA n 3 17 DG n 3 18 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'algZ, amrZ, PA3385' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PA01 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C41(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 PRO 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ARG 5 2 ? ? ? A . n A 1 6 PRO 6 3 ? ? ? A . n A 1 7 LEU 7 4 ? ? ? A . n A 1 8 LYS 8 5 ? ? ? A . n A 1 9 GLN 9 6 ? ? ? A . n A 1 10 ALA 10 7 ? ? ? A . n A 1 11 THR 11 8 ? ? ? A . n A 1 12 PRO 12 9 ? ? ? A . n A 1 13 THR 13 10 10 THR THR A . n A 1 14 TYR 14 11 11 TYR TYR A . n A 1 15 SER 15 12 12 SER SER A . n A 1 16 SER 16 13 13 SER SER A . n A 1 17 ARG 17 14 14 ARG ARG A . n A 1 18 THR 18 15 15 THR THR A . n A 1 19 ALA 19 16 16 ALA ALA A . n A 1 20 ASP 20 17 17 ASP ASP A . n A 1 21 LYS 21 18 18 LYS LYS A . n A 1 22 PHE 22 19 19 PHE PHE A . n A 1 23 VAL 23 20 20 VAL VAL A . n A 1 24 VAL 24 21 21 VAL VAL A . n A 1 25 ARG 25 22 22 ARG ARG A . n A 1 26 LEU 26 23 23 LEU LEU A . n A 1 27 PRO 27 24 24 PRO PRO A . n A 1 28 GLU 28 25 25 GLU GLU A . n A 1 29 GLY 29 26 26 GLY GLY A . n A 1 30 MSE 30 27 27 MSE MSE A . n A 1 31 ARG 31 28 28 ARG ARG A . n A 1 32 GLU 32 29 29 GLU GLU A . n A 1 33 GLN 33 30 30 GLN GLN A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 VAL 37 34 34 VAL VAL A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 ARG 39 36 36 ARG ARG A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 HIS 41 38 38 HIS HIS A . n A 1 42 HIS 42 39 39 HIS HIS A . n A 1 43 ARG 43 40 40 ARG ARG A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 MSE 45 42 42 MSE MSE A . n A 1 46 ASN 46 43 43 ASN ASN A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 GLU 48 45 45 GLU GLU A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 ILE 50 47 47 ILE ILE A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 ARG 52 49 49 ARG ARG A . n A 1 53 LEU 53 50 50 LEU LEU A . n A 1 54 GLU 54 51 51 GLU GLU A . n A 1 55 GLN 55 52 52 GLN GLN A . n A 1 56 SER 56 53 53 SER SER A . n A 1 57 LEU 57 54 54 LEU LEU A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 GLN 59 56 56 GLN GLN A . n A 1 60 GLU 60 57 57 GLU GLU A . n A 1 61 GLY 61 58 58 GLY GLY A . n A 1 62 ALA 62 59 59 ALA ALA A . n A 1 63 LEU 63 60 ? ? ? A . n A 1 64 GLN 64 61 ? ? ? A . n A 1 65 ASP 65 62 ? ? ? A . n A 1 66 ASN 66 63 ? ? ? A . n A 1 67 LEU 67 64 ? ? ? A . n A 1 68 GLY 68 65 ? ? ? A . n A 1 69 VAL 69 66 ? ? ? A . n B 1 1 GLY 1 -2 ? ? ? B . n B 1 2 PRO 2 -1 ? ? ? B . n B 1 3 HIS 3 0 ? ? ? B . n B 1 4 MSE 4 1 ? ? ? B . n B 1 5 ARG 5 2 ? ? ? B . n B 1 6 PRO 6 3 ? ? ? B . n B 1 7 LEU 7 4 ? ? ? B . n B 1 8 LYS 8 5 ? ? ? B . n B 1 9 GLN 9 6 ? ? ? B . n B 1 10 ALA 10 7 ? ? ? B . n B 1 11 THR 11 8 ? ? ? B . n B 1 12 PRO 12 9 ? ? ? B . n B 1 13 THR 13 10 ? ? ? B . n B 1 14 TYR 14 11 ? ? ? B . n B 1 15 SER 15 12 ? ? ? B . n B 1 16 SER 16 13 ? ? ? B . n B 1 17 ARG 17 14 ? ? ? B . n B 1 18 THR 18 15 ? ? ? B . n B 1 19 ALA 19 16 16 ALA ALA B . n B 1 20 ASP 20 17 17 ASP ASP B . n B 1 21 LYS 21 18 18 LYS LYS B . n B 1 22 PHE 22 19 19 PHE PHE B . n B 1 23 VAL 23 20 20 VAL VAL B . n B 1 24 VAL 24 21 21 VAL VAL B . n B 1 25 ARG 25 22 22 ARG ARG B . n B 1 26 LEU 26 23 23 LEU LEU B . n B 1 27 PRO 27 24 24 PRO PRO B . n B 1 28 GLU 28 25 25 GLU GLU B . n B 1 29 GLY 29 26 26 GLY GLY B . n B 1 30 MSE 30 27 27 MSE MSE B . n B 1 31 ARG 31 28 28 ARG ARG B . n B 1 32 GLU 32 29 29 GLU GLU B . n B 1 33 GLN 33 30 30 GLN GLN B . n B 1 34 ILE 34 31 31 ILE ILE B . n B 1 35 ALA 35 32 32 ALA ALA B . n B 1 36 GLU 36 33 33 GLU GLU B . n B 1 37 VAL 37 34 34 VAL VAL B . n B 1 38 ALA 38 35 35 ALA ALA B . n B 1 39 ARG 39 36 36 ARG ARG B . n B 1 40 SER 40 37 37 SER SER B . n B 1 41 HIS 41 38 38 HIS HIS B . n B 1 42 HIS 42 39 39 HIS HIS B . n B 1 43 ARG 43 40 40 ARG ARG B . n B 1 44 SER 44 41 41 SER SER B . n B 1 45 MSE 45 42 42 MSE MSE B . n B 1 46 ASN 46 43 43 ASN ASN B . n B 1 47 SER 47 44 44 SER SER B . n B 1 48 GLU 48 45 45 GLU GLU B . n B 1 49 ILE 49 46 46 ILE ILE B . n B 1 50 ILE 50 47 47 ILE ILE B . n B 1 51 ALA 51 48 48 ALA ALA B . n B 1 52 ARG 52 49 49 ARG ARG B . n B 1 53 LEU 53 50 50 LEU LEU B . n B 1 54 GLU 54 51 51 GLU GLU B . n B 1 55 GLN 55 52 52 GLN GLN B . n B 1 56 SER 56 53 53 SER SER B . n B 1 57 LEU 57 54 54 LEU LEU B . n B 1 58 LEU 58 55 55 LEU LEU B . n B 1 59 GLN 59 56 56 GLN GLN B . n B 1 60 GLU 60 57 57 GLU GLU B . n B 1 61 GLY 61 58 58 GLY GLY B . n B 1 62 ALA 62 59 59 ALA ALA B . n B 1 63 LEU 63 60 ? ? ? B . n B 1 64 GLN 64 61 ? ? ? B . n B 1 65 ASP 65 62 ? ? ? B . n B 1 66 ASN 66 63 ? ? ? B . n B 1 67 LEU 67 64 ? ? ? B . n B 1 68 GLY 68 65 ? ? ? B . n B 1 69 VAL 69 66 ? ? ? B . n C 1 1 GLY 1 -2 ? ? ? C . n C 1 2 PRO 2 -1 ? ? ? C . n C 1 3 HIS 3 0 ? ? ? C . n C 1 4 MSE 4 1 ? ? ? C . n C 1 5 ARG 5 2 ? ? ? C . n C 1 6 PRO 6 3 ? ? ? C . n C 1 7 LEU 7 4 ? ? ? C . n C 1 8 LYS 8 5 ? ? ? C . n C 1 9 GLN 9 6 ? ? ? C . n C 1 10 ALA 10 7 ? ? ? C . n C 1 11 THR 11 8 ? ? ? C . n C 1 12 PRO 12 9 ? ? ? C . n C 1 13 THR 13 10 10 THR THR C . n C 1 14 TYR 14 11 11 TYR TYR C . n C 1 15 SER 15 12 12 SER SER C . n C 1 16 SER 16 13 13 SER SER C . n C 1 17 ARG 17 14 14 ARG ARG C . n C 1 18 THR 18 15 15 THR THR C . n C 1 19 ALA 19 16 16 ALA ALA C . n C 1 20 ASP 20 17 17 ASP ASP C . n C 1 21 LYS 21 18 18 LYS LYS C . n C 1 22 PHE 22 19 19 PHE PHE C . n C 1 23 VAL 23 20 20 VAL VAL C . n C 1 24 VAL 24 21 21 VAL VAL C . n C 1 25 ARG 25 22 22 ARG ARG C . n C 1 26 LEU 26 23 23 LEU LEU C . n C 1 27 PRO 27 24 24 PRO PRO C . n C 1 28 GLU 28 25 25 GLU GLU C . n C 1 29 GLY 29 26 26 GLY GLY C . n C 1 30 MSE 30 27 27 MSE MSE C . n C 1 31 ARG 31 28 28 ARG ARG C . n C 1 32 GLU 32 29 29 GLU GLU C . n C 1 33 GLN 33 30 30 GLN GLN C . n C 1 34 ILE 34 31 31 ILE ILE C . n C 1 35 ALA 35 32 32 ALA ALA C . n C 1 36 GLU 36 33 33 GLU GLU C . n C 1 37 VAL 37 34 34 VAL VAL C . n C 1 38 ALA 38 35 35 ALA ALA C . n C 1 39 ARG 39 36 36 ARG ARG C . n C 1 40 SER 40 37 37 SER SER C . n C 1 41 HIS 41 38 38 HIS HIS C . n C 1 42 HIS 42 39 39 HIS HIS C . n C 1 43 ARG 43 40 40 ARG ARG C . n C 1 44 SER 44 41 41 SER SER C . n C 1 45 MSE 45 42 42 MSE MSE C . n C 1 46 ASN 46 43 43 ASN ASN C . n C 1 47 SER 47 44 44 SER SER C . n C 1 48 GLU 48 45 45 GLU GLU C . n C 1 49 ILE 49 46 46 ILE ILE C . n C 1 50 ILE 50 47 47 ILE ILE C . n C 1 51 ALA 51 48 48 ALA ALA C . n C 1 52 ARG 52 49 49 ARG ARG C . n C 1 53 LEU 53 50 50 LEU LEU C . n C 1 54 GLU 54 51 51 GLU GLU C . n C 1 55 GLN 55 52 52 GLN GLN C . n C 1 56 SER 56 53 53 SER SER C . n C 1 57 LEU 57 54 54 LEU LEU C . n C 1 58 LEU 58 55 55 LEU LEU C . n C 1 59 GLN 59 56 56 GLN GLN C . n C 1 60 GLU 60 57 57 GLU GLU C . n C 1 61 GLY 61 58 58 GLY GLY C . n C 1 62 ALA 62 59 ? ? ? C . n C 1 63 LEU 63 60 ? ? ? C . n C 1 64 GLN 64 61 ? ? ? C . n C 1 65 ASP 65 62 ? ? ? C . n C 1 66 ASN 66 63 ? ? ? C . n C 1 67 LEU 67 64 ? ? ? C . n C 1 68 GLY 68 65 ? ? ? C . n C 1 69 VAL 69 66 ? ? ? C . n D 1 1 GLY 1 -2 ? ? ? D . n D 1 2 PRO 2 -1 ? ? ? D . n D 1 3 HIS 3 0 ? ? ? D . n D 1 4 MSE 4 1 ? ? ? D . n D 1 5 ARG 5 2 ? ? ? D . n D 1 6 PRO 6 3 ? ? ? D . n D 1 7 LEU 7 4 ? ? ? D . n D 1 8 LYS 8 5 ? ? ? D . n D 1 9 GLN 9 6 ? ? ? D . n D 1 10 ALA 10 7 ? ? ? D . n D 1 11 THR 11 8 ? ? ? D . n D 1 12 PRO 12 9 ? ? ? D . n D 1 13 THR 13 10 ? ? ? D . n D 1 14 TYR 14 11 ? ? ? D . n D 1 15 SER 15 12 ? ? ? D . n D 1 16 SER 16 13 ? ? ? D . n D 1 17 ARG 17 14 ? ? ? D . n D 1 18 THR 18 15 ? ? ? D . n D 1 19 ALA 19 16 16 ALA ALA D . n D 1 20 ASP 20 17 17 ASP ASP D . n D 1 21 LYS 21 18 18 LYS LYS D . n D 1 22 PHE 22 19 19 PHE PHE D . n D 1 23 VAL 23 20 20 VAL VAL D . n D 1 24 VAL 24 21 21 VAL VAL D . n D 1 25 ARG 25 22 22 ARG ARG D . n D 1 26 LEU 26 23 23 LEU LEU D . n D 1 27 PRO 27 24 24 PRO PRO D . n D 1 28 GLU 28 25 25 GLU GLU D . n D 1 29 GLY 29 26 26 GLY GLY D . n D 1 30 MSE 30 27 27 MSE MSE D . n D 1 31 ARG 31 28 28 ARG ARG D . n D 1 32 GLU 32 29 29 GLU GLU D . n D 1 33 GLN 33 30 30 GLN GLN D . n D 1 34 ILE 34 31 31 ILE ILE D . n D 1 35 ALA 35 32 32 ALA ALA D . n D 1 36 GLU 36 33 33 GLU GLU D . n D 1 37 VAL 37 34 34 VAL VAL D . n D 1 38 ALA 38 35 35 ALA ALA D . n D 1 39 ARG 39 36 36 ARG ARG D . n D 1 40 SER 40 37 37 SER SER D . n D 1 41 HIS 41 38 38 HIS HIS D . n D 1 42 HIS 42 39 39 HIS HIS D . n D 1 43 ARG 43 40 40 ARG ARG D . n D 1 44 SER 44 41 41 SER SER D . n D 1 45 MSE 45 42 42 MSE MSE D . n D 1 46 ASN 46 43 43 ASN ASN D . n D 1 47 SER 47 44 44 SER SER D . n D 1 48 GLU 48 45 45 GLU GLU D . n D 1 49 ILE 49 46 46 ILE ILE D . n D 1 50 ILE 50 47 47 ILE ILE D . n D 1 51 ALA 51 48 48 ALA ALA D . n D 1 52 ARG 52 49 49 ARG ARG D . n D 1 53 LEU 53 50 50 LEU LEU D . n D 1 54 GLU 54 51 51 GLU GLU D . n D 1 55 GLN 55 52 52 GLN GLN D . n D 1 56 SER 56 53 53 SER SER D . n D 1 57 LEU 57 54 54 LEU LEU D . n D 1 58 LEU 58 55 55 LEU LEU D . n D 1 59 GLN 59 56 56 GLN GLN D . n D 1 60 GLU 60 57 57 GLU GLU D . n D 1 61 GLY 61 58 58 GLY GLY D . n D 1 62 ALA 62 59 59 ALA ALA D . n D 1 63 LEU 63 60 60 LEU LEU D . n D 1 64 GLN 64 61 61 GLN GLN D . n D 1 65 ASP 65 62 62 ASP ASP D . n D 1 66 ASN 66 63 63 ASN ASN D . n D 1 67 LEU 67 64 ? ? ? D . n D 1 68 GLY 68 65 ? ? ? D . n D 1 69 VAL 69 66 ? ? ? D . n E 2 1 DA 1 1 1 DA A E . n E 2 2 DC 2 2 2 DC C E . n E 2 3 DT 3 3 3 DT T E . n E 2 4 DG 4 4 4 DG G E . n E 2 5 DG 5 5 5 DG G E . n E 2 6 DC 6 6 6 DC C E . n E 2 7 DA 7 7 7 DA A E . n E 2 8 DA 8 8 8 DA A E . n E 2 9 DA 9 9 9 DA A E . n E 2 10 DA 10 10 10 DA A E . n E 2 11 DC 11 11 11 DC C E . n E 2 12 DG 12 12 12 DG G E . n E 2 13 DC 13 13 13 DC C E . n E 2 14 DC 14 14 14 DC C E . n E 2 15 DG 15 15 15 DG G E . n E 2 16 DG 16 16 16 DG G E . n E 2 17 DC 17 17 17 DC C E . n E 2 18 DA 18 18 18 DA A E . n F 3 1 DT 1 19 19 DT T F . n F 3 2 DG 2 20 20 DG G F . n F 3 3 DC 3 21 21 DC C F . n F 3 4 DC 4 22 22 DC C F . n F 3 5 DG 5 23 23 DG G F . n F 3 6 DG 6 24 24 DG G F . n F 3 7 DC 7 25 25 DC C F . n F 3 8 DG 8 26 26 DG G F . n F 3 9 DT 9 27 27 DT T F . n F 3 10 DT 10 28 28 DT T F . n F 3 11 DT 11 29 29 DT T F . n F 3 12 DT 12 30 30 DT T F . n F 3 13 DG 13 31 31 DG G F . n F 3 14 DC 14 32 32 DC C F . n F 3 15 DC 15 33 33 DC C F . n F 3 16 DA 16 34 34 DA A F . n F 3 17 DG 17 35 35 DG G F . n F 3 18 DT 18 36 36 DT T F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HOH 1 67 7 HOH HOH A . H 4 HOH 1 67 3 HOH HOH B . I 4 HOH 1 67 2 HOH HOH C . I 4 HOH 2 68 5 HOH HOH C . J 4 HOH 1 19 4 HOH HOH E . K 4 HOH 1 1 1 HOH HOH F . K 4 HOH 2 6 6 HOH HOH F . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE 2.14 14-Jan-2009 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 REFMAC refmac_5.5.0063 24/04/2001 program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _cell.length_a 129.465 _cell.length_b 129.465 _cell.length_c 152.554 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3QOQ _cell.pdbx_unique_axis ? _cell.Z_PDB 64 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.entry_id 3QOQ _symmetry.Int_Tables_number 97 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3QOQ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.75 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 67.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '3% PEG8K, 0.1M MES, 0.15M NaCl, 2mM TCEP, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-07-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SILICON(111) CRYSTAL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 # _reflns.entry_id 3QOQ _reflns.d_resolution_high 3.100 _reflns.d_resolution_low 40.000 _reflns.number_obs 11900 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_netI_over_sigmaI 12.800 _reflns.pdbx_chi_squared 1.308 _reflns.pdbx_redundancy 5.700 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 3.100 3.150 ? ? ? 0.543 ? ? 0.894 5.800 ? 1141 100.000 1 1 3.150 3.210 ? ? ? 0.283 ? ? 1.002 5.800 ? 1139 100.000 2 1 3.210 3.270 ? ? ? 0.195 ? ? 1.066 5.700 ? 1096 100.000 3 1 3.270 3.340 ? ? ? 0.209 ? ? 1.075 5.700 ? 1128 99.800 4 1 3.340 3.410 ? ? ? 0.213 ? ? 0.976 5.800 ? 1147 100.000 5 1 3.410 3.490 ? ? ? 0.162 ? ? 1.095 5.800 ? 1110 100.000 6 1 3.490 3.580 ? ? ? 0.156 ? ? 1.022 5.800 ? 1109 100.000 7 1 3.580 3.680 ? ? ? 0.157 ? ? 1.031 5.800 ? 1121 100.000 8 1 3.680 3.780 ? ? ? 0.135 ? ? 0.981 5.700 ? 1119 100.000 9 1 3.780 3.910 ? ? ? 0.103 ? ? 1.048 5.800 ? 1137 100.000 10 1 3.910 4.040 ? ? ? 0.080 ? ? 1.030 5.800 ? 1133 99.900 11 1 4.040 4.210 ? ? ? 0.075 ? ? 1.067 5.800 ? 1089 100.000 12 1 4.210 4.400 ? ? ? 0.062 ? ? 1.186 5.800 ? 1134 99.900 13 1 4.400 4.630 ? ? ? 0.056 ? ? 1.237 5.700 ? 1126 99.900 14 1 4.630 4.920 ? ? ? 0.056 ? ? 1.581 5.700 ? 1120 99.900 15 1 4.920 5.300 ? ? ? 0.059 ? ? 1.800 5.700 ? 1117 99.900 16 1 5.300 5.830 ? ? ? 0.055 ? ? 2.109 5.700 ? 1128 99.900 17 1 5.830 6.670 ? ? ? 0.050 ? ? 2.091 5.600 ? 1132 99.700 18 1 6.670 8.390 ? ? ? 0.035 ? ? 1.913 5.500 ? 1119 99.600 19 1 8.390 40.000 ? ? ? 0.028 ? ? 2.082 5.700 ? 1090 96.200 20 1 # _refine.entry_id 3QOQ _refine.ls_d_res_high 3.1000 _refine.ls_d_res_low 39.2500 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_number_reflns_obs 11827 _refine.ls_number_reflns_all 11827 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES REFINED INDIVIDUALLY' _refine.ls_R_factor_obs 0.2631 _refine.ls_R_factor_R_work 0.2614 _refine.ls_wR_factor_R_work 0.2610 _refine.ls_R_factor_R_free 0.2954 _refine.ls_wR_factor_R_free 0.2950 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 593 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 82.8186 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.1000 _refine.aniso_B[2][2] -1.1000 _refine.aniso_B[3][3] 2.2000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9070 _refine.correlation_coeff_Fo_to_Fc_free 0.8870 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.4180 _refine.overall_SU_ML 0.3250 _refine.overall_SU_B 18.6560 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 127.960 _refine.B_iso_min 20.000 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.ls_R_factor_all ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1522 _refine_hist.pdbx_number_atoms_nucleic_acid 732 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 2261 _refine_hist.d_res_high 3.1000 _refine_hist.d_res_low 39.2500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2356 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3316 1.180 2.352 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 187 4.293 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 83 38.953 23.012 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 298 21.314 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22 14.403 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 370 0.063 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1532 0.003 0.020 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 3.180 3.100 812 100.000 759 0.317 53 0.446 . . . . . 'X-RAY DIFFRACTION' 20 3.267 3.180 815 100.000 775 0.299 40 0.312 . . . . . 'X-RAY DIFFRACTION' 20 3.361 3.267 782 100.000 756 0.303 26 0.381 . . . . . 'X-RAY DIFFRACTION' 20 3.463 3.361 783 100.000 734 0.310 49 0.373 . . . . . 'X-RAY DIFFRACTION' 20 3.576 3.463 771 100.000 726 0.311 45 0.312 . . . . . 'X-RAY DIFFRACTION' 20 3.701 3.576 746 100.000 711 0.274 35 0.366 . . . . . 'X-RAY DIFFRACTION' 20 3.839 3.701 719 100.000 685 0.273 34 0.301 . . . . . 'X-RAY DIFFRACTION' 20 3.994 3.839 695 100.000 647 0.245 48 0.272 . . . . . 'X-RAY DIFFRACTION' 20 4.170 3.994 660 100.000 625 0.239 35 0.324 . . . . . 'X-RAY DIFFRACTION' 20 4.371 4.170 650 100.000 620 0.240 30 0.218 . . . . . 'X-RAY DIFFRACTION' 20 4.604 4.371 617 100.000 589 0.235 28 0.283 . . . . . 'X-RAY DIFFRACTION' 20 4.879 4.604 585 100.000 557 0.229 28 0.345 . . . . . 'X-RAY DIFFRACTION' 20 5.210 4.879 561 100.000 535 0.237 26 0.286 . . . . . 'X-RAY DIFFRACTION' 20 5.619 5.210 519 100.000 494 0.276 25 0.267 . . . . . 'X-RAY DIFFRACTION' 20 6.143 5.619 486 100.000 460 0.286 26 0.214 . . . . . 'X-RAY DIFFRACTION' 20 6.847 6.143 444 100.000 428 0.297 16 0.308 . . . . . 'X-RAY DIFFRACTION' 20 7.867 6.847 398 100.000 380 0.256 18 0.247 . . . . . 'X-RAY DIFFRACTION' 20 9.540 7.867 341 100.000 328 0.216 13 0.286 . . . . . 'X-RAY DIFFRACTION' 20 13.109 9.540 282 100.000 268 0.229 14 0.359 . . . . . 'X-RAY DIFFRACTION' 20 39.248 13.109 161 100.000 157 0.268 4 0.101 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3QOQ _struct.title 'Crystal Structure of the Transcription Factor AmrZ in Complex with the 18 Base Pair amrZ1 Binding Site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QOQ _struct_keywords.text 'Protein-DNA Complex, Ribbon-Helix-Helix, Transcription Factor, DNA Binding, Transcription-DNA complex' _struct_keywords.pdbx_keywords Transcription/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q9RPY7_PSEAE Q9RPY7 1 MRPLKQATPTYSSRTADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQSLLQEGALQDNLGV 1 ? 2 PDB 3QOQ 3QOQ 2 ACTGGCAAAACGCCGGCA ? ? 3 PDB 3QOQ 3QOQ 3 TGCCGGCGTTTTGCCAGT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QOQ A 4 ? 69 ? Q9RPY7 1 ? 66 ? 1 66 2 1 3QOQ B 4 ? 69 ? Q9RPY7 1 ? 66 ? 1 66 3 1 3QOQ C 4 ? 69 ? Q9RPY7 1 ? 66 ? 1 66 4 1 3QOQ D 4 ? 69 ? Q9RPY7 1 ? 66 ? 1 66 5 2 3QOQ E 1 ? 18 ? 3QOQ 1 ? 18 ? 1 18 6 3 3QOQ F 1 ? 18 ? 3QOQ 19 ? 36 ? 19 36 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QOQ GLY A 1 ? UNP Q9RPY7 ? ? 'expression tag' -2 1 1 3QOQ PRO A 2 ? UNP Q9RPY7 ? ? 'expression tag' -1 2 1 3QOQ HIS A 3 ? UNP Q9RPY7 ? ? 'expression tag' 0 3 2 3QOQ GLY B 1 ? UNP Q9RPY7 ? ? 'expression tag' -2 4 2 3QOQ PRO B 2 ? UNP Q9RPY7 ? ? 'expression tag' -1 5 2 3QOQ HIS B 3 ? UNP Q9RPY7 ? ? 'expression tag' 0 6 3 3QOQ GLY C 1 ? UNP Q9RPY7 ? ? 'expression tag' -2 7 3 3QOQ PRO C 2 ? UNP Q9RPY7 ? ? 'expression tag' -1 8 3 3QOQ HIS C 3 ? UNP Q9RPY7 ? ? 'expression tag' 0 9 4 3QOQ GLY D 1 ? UNP Q9RPY7 ? ? 'expression tag' -2 10 4 3QOQ PRO D 2 ? UNP Q9RPY7 ? ? 'expression tag' -1 11 4 3QOQ HIS D 3 ? UNP Q9RPY7 ? ? 'expression tag' 0 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12030 ? 1 MORE -77 ? 1 'SSA (A^2)' 15240 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 29 ? HIS A 41 ? GLY A 26 HIS A 38 1 ? 13 HELX_P HELX_P2 2 SER A 44 ? GLY A 61 ? SER A 41 GLY A 58 1 ? 18 HELX_P HELX_P3 3 GLY B 29 ? HIS B 41 ? GLY B 26 HIS B 38 1 ? 13 HELX_P HELX_P4 4 SER B 44 ? GLU B 60 ? SER B 41 GLU B 57 1 ? 17 HELX_P HELX_P5 5 GLY C 29 ? HIS C 41 ? GLY C 26 HIS C 38 1 ? 13 HELX_P HELX_P6 6 SER C 44 ? GLU C 60 ? SER C 41 GLU C 57 1 ? 17 HELX_P HELX_P7 7 GLY D 29 ? HIS D 41 ? GLY D 26 HIS D 38 1 ? 13 HELX_P HELX_P8 8 SER D 44 ? GLY D 61 ? SER D 41 GLY D 58 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 29 C ? ? ? 1_555 A MSE 30 N ? ? A GLY 26 A MSE 27 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 30 C ? ? ? 1_555 A ARG 31 N ? ? A MSE 27 A ARG 28 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A SER 44 C ? ? ? 1_555 A MSE 45 N ? ? A SER 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A MSE 45 C ? ? ? 1_555 A ASN 46 N ? ? A MSE 42 A ASN 43 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? B GLY 29 C ? ? ? 1_555 B MSE 30 N ? ? B GLY 26 B MSE 27 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? B MSE 30 C ? ? ? 1_555 B ARG 31 N ? ? B MSE 27 B ARG 28 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? B SER 44 C ? ? ? 1_555 B MSE 45 N ? ? B SER 41 B MSE 42 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? B MSE 45 C ? ? ? 1_555 B ASN 46 N ? ? B MSE 42 B ASN 43 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? C GLY 29 C ? ? ? 1_555 C MSE 30 N ? ? C GLY 26 C MSE 27 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? C MSE 30 C ? ? ? 1_555 C ARG 31 N ? ? C MSE 27 C ARG 28 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? C SER 44 C ? ? ? 1_555 C MSE 45 N ? ? C SER 41 C MSE 42 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? C MSE 45 C ? ? ? 1_555 C ASN 46 N ? ? C MSE 42 C ASN 43 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? D GLY 29 C ? ? ? 1_555 D MSE 30 N ? ? D GLY 26 D MSE 27 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? D MSE 30 C ? ? ? 1_555 D ARG 31 N ? ? D MSE 27 D ARG 28 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale15 covale both ? D SER 44 C ? ? ? 1_555 D MSE 45 N ? ? D SER 41 D MSE 42 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? D MSE 45 C ? ? ? 1_555 D ASN 46 N ? ? D MSE 42 D ASN 43 1_555 ? ? ? ? ? ? ? 1.330 ? ? hydrog1 hydrog ? ? E DA 1 N1 ? ? ? 1_555 F DT 18 N3 ? ? E DA 1 F DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? E DA 1 N6 ? ? ? 1_555 F DT 18 O4 ? ? E DA 1 F DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? E DC 2 N3 ? ? ? 1_555 F DG 17 N1 ? ? E DC 2 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DG 17 O6 ? ? E DC 2 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DG 17 N2 ? ? E DC 2 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? E DT 3 N3 ? ? ? 1_555 F DA 16 N1 ? ? E DT 3 F DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? E DT 3 O4 ? ? ? 1_555 F DA 16 N6 ? ? E DT 3 F DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F DC 15 N3 ? ? E DG 4 F DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F DC 15 O2 ? ? E DG 4 F DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DC 15 N4 ? ? E DG 4 F DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? E DG 5 N1 ? ? ? 1_555 F DC 14 N3 ? ? E DG 5 F DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? E DG 5 N2 ? ? ? 1_555 F DC 14 O2 ? ? E DG 5 F DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? E DG 5 O6 ? ? ? 1_555 F DC 14 N4 ? ? E DG 5 F DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? E DC 6 N3 ? ? ? 1_555 F DG 13 N1 ? ? E DC 6 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? E DC 6 N4 ? ? ? 1_555 F DG 13 O6 ? ? E DC 6 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? E DC 6 O2 ? ? ? 1_555 F DG 13 N2 ? ? E DC 6 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? E DA 7 N1 ? ? ? 1_555 F DT 12 N3 ? ? E DA 7 F DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? E DA 7 N6 ? ? ? 1_555 F DT 12 O4 ? ? E DA 7 F DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? E DA 8 N1 ? ? ? 1_555 F DT 11 N3 ? ? E DA 8 F DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? E DA 8 N6 ? ? ? 1_555 F DT 11 O4 ? ? E DA 8 F DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? E DA 9 N1 ? ? ? 1_555 F DT 10 N3 ? ? E DA 9 F DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? E DA 9 N6 ? ? ? 1_555 F DT 10 O4 ? ? E DA 9 F DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? E DA 10 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 10 F DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 10 F DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? E DC 11 N3 ? ? ? 1_555 F DG 8 N1 ? ? E DC 11 F DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? E DC 11 N4 ? ? ? 1_555 F DG 8 O6 ? ? E DC 11 F DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? E DC 11 O2 ? ? ? 1_555 F DG 8 N2 ? ? E DC 11 F DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? E DG 12 N1 ? ? ? 1_555 F DC 7 N3 ? ? E DG 12 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E DG 12 N2 ? ? ? 1_555 F DC 7 O2 ? ? E DG 12 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E DG 12 O6 ? ? ? 1_555 F DC 7 N4 ? ? E DG 12 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E DC 13 N3 ? ? ? 1_555 F DG 6 N1 ? ? E DC 13 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DC 13 N4 ? ? ? 1_555 F DG 6 O6 ? ? E DC 13 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DC 13 O2 ? ? ? 1_555 F DG 6 N2 ? ? E DC 13 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DC 14 N3 ? ? ? 1_555 F DG 5 N1 ? ? E DC 14 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DC 14 N4 ? ? ? 1_555 F DG 5 O6 ? ? E DC 14 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DC 14 O2 ? ? ? 1_555 F DG 5 N2 ? ? E DC 14 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DG 15 N1 ? ? ? 1_555 F DC 4 N3 ? ? E DG 15 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DG 15 N2 ? ? ? 1_555 F DC 4 O2 ? ? E DG 15 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DG 15 O6 ? ? ? 1_555 F DC 4 N4 ? ? E DG 15 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DG 16 N1 ? ? ? 1_555 F DC 3 N3 ? ? E DG 16 F DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DG 16 N2 ? ? ? 1_555 F DC 3 O2 ? ? E DG 16 F DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DG 16 O6 ? ? ? 1_555 F DC 3 N4 ? ? E DG 16 F DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DC 17 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 17 F DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DC 17 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 17 F DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DC 17 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 17 F DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DA 18 N1 ? ? ? 1_555 F DT 1 N3 ? ? E DA 18 F DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DA 18 N6 ? ? ? 1_555 F DT 1 O4 ? ? E DA 18 F DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 30 ? . . . . MSE A 27 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 45 ? . . . . MSE A 42 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE B 30 ? . . . . MSE B 27 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE B 45 ? . . . . MSE B 42 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE C 30 ? . . . . MSE C 27 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE C 45 ? . . . . MSE C 42 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE D 30 ? . . . . MSE D 27 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MSE D 45 ? . . . . MSE D 42 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 20 ? ARG A 25 ? ASP A 17 ARG A 22 A 2 LYS B 21 ? LEU B 26 ? LYS B 18 LEU B 23 B 1 ASP C 20 ? LEU C 26 ? ASP C 17 LEU C 23 B 2 ASP D 20 ? LEU D 26 ? ASP D 17 LEU D 23 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 24 ? N VAL A 21 O PHE B 22 ? O PHE B 19 B 1 2 N PHE C 22 ? N PHE C 19 O VAL D 24 ? O VAL D 21 # _pdbx_entry_details.entry_id 3QOQ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" E DA 1 ? ? "C4'" E DA 1 ? ? "C3'" E DA 1 ? ? 101.97 104.50 -2.53 0.40 N 2 1 "O4'" E DA 1 ? ? "C1'" E DA 1 ? ? N9 E DA 1 ? ? 110.76 108.30 2.46 0.30 N 3 1 "O4'" E DC 2 ? ? "C4'" E DC 2 ? ? "C3'" E DC 2 ? ? 101.01 104.50 -3.49 0.40 N 4 1 "C1'" E DC 2 ? ? "O4'" E DC 2 ? ? "C4'" E DC 2 ? ? 101.77 110.10 -8.33 1.00 N 5 1 "O4'" E DC 2 ? ? "C1'" E DC 2 ? ? N1 E DC 2 ? ? 112.76 108.30 4.46 0.30 N 6 1 "C3'" E DT 3 ? ? "C2'" E DT 3 ? ? "C1'" E DT 3 ? ? 97.35 102.40 -5.05 0.80 N 7 1 "O4'" E DT 3 ? ? "C1'" E DT 3 ? ? N1 E DT 3 ? ? 112.88 108.30 4.58 0.30 N 8 1 "O4'" E DG 5 ? ? "C1'" E DG 5 ? ? N9 E DG 5 ? ? 112.87 108.30 4.57 0.30 N 9 1 "O4'" E DA 8 ? ? "C1'" E DA 8 ? ? N9 E DA 8 ? ? 110.18 108.30 1.88 0.30 N 10 1 "C1'" E DC 14 ? ? "O4'" E DC 14 ? ? "C4'" E DC 14 ? ? 103.28 110.10 -6.82 1.00 N 11 1 "O4'" E DG 15 ? ? "C1'" E DG 15 ? ? N9 E DG 15 ? ? 111.53 108.30 3.23 0.30 N 12 1 "O4'" E DG 16 ? ? "C4'" E DG 16 ? ? "C3'" E DG 16 ? ? 98.30 104.50 -6.20 0.40 N 13 1 "C1'" E DG 16 ? ? "O4'" E DG 16 ? ? "C4'" E DG 16 ? ? 103.57 110.10 -6.53 1.00 N 14 1 "O4'" E DG 16 ? ? "C1'" E DG 16 ? ? N9 E DG 16 ? ? 112.05 108.30 3.75 0.30 N 15 1 "O4'" E DA 18 ? ? "C4'" E DA 18 ? ? "C3'" E DA 18 ? ? 101.30 104.50 -3.20 0.40 N 16 1 "O4'" F DG 20 ? ? "C4'" F DG 20 ? ? "C3'" F DG 20 ? ? 101.86 104.50 -2.64 0.40 N 17 1 "O4'" F DG 20 ? ? "C1'" F DG 20 ? ? N9 F DG 20 ? ? 110.56 108.30 2.26 0.30 N 18 1 "O4'" F DC 22 ? ? "C1'" F DC 22 ? ? N1 F DC 22 ? ? 111.29 108.30 2.99 0.30 N 19 1 "O4'" F DG 24 ? ? "C1'" F DG 24 ? ? N9 F DG 24 ? ? 111.87 108.30 3.57 0.30 N 20 1 "O4'" F DT 27 ? ? "C4'" F DT 27 ? ? "C3'" F DT 27 ? ? 99.39 104.50 -5.11 0.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU D 25 ? ? -33.41 -71.99 2 1 LEU D 60 ? ? -97.64 30.57 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 30 A MSE 27 ? MET SELENOMETHIONINE 2 A MSE 45 A MSE 42 ? MET SELENOMETHIONINE 3 B MSE 30 B MSE 27 ? MET SELENOMETHIONINE 4 B MSE 45 B MSE 42 ? MET SELENOMETHIONINE 5 C MSE 30 C MSE 27 ? MET SELENOMETHIONINE 6 C MSE 45 C MSE 42 ? MET SELENOMETHIONINE 7 D MSE 30 D MSE 27 ? MET SELENOMETHIONINE 8 D MSE 45 D MSE 42 ? MET SELENOMETHIONINE # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.Cartn_x _pdbx_phasing_MAD_set_site.Cartn_y _pdbx_phasing_MAD_set_site.Cartn_z _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.b_iso 1 SE 12.859 -16.172 -52.504 2.67 68.12 2 SE -59.811 17.136 -38.985 2.09 68.96 3 SE -59.923 33.221 -41.407 1.98 62.37 4 SE -31.751 16.122 -95.930 1.66 60.75 5 SE -24.513 24.691 -53.622 1.78 62.80 6 SE -28.833 4.965 -43.354 0.66 50.80 7 SE 4.070 -41.007 -40.379 1.33 62.05 8 SE -18.032 13.027 -59.557 0.99 56.51 9 SE -2.670 -29.090 -42.996 0.93 54.24 10 SE -4.677 -46.295 -35.708 0.97 56.13 11 SE -10.971 -18.946 -60.314 0.91 55.46 12 SE -4.091 -28.054 -45.467 0.93 54.61 13 SE -5.413 -29.700 -33.940 0.81 54.58 14 SE -17.384 -30.431 -97.141 0.74 52.78 # _pdbx_phasing_dm.entry_id 3QOQ _pdbx_phasing_dm.fom_acentric 0.670 _pdbx_phasing_dm.fom_centric 0.570 _pdbx_phasing_dm.fom 0.650 _pdbx_phasing_dm.reflns_acentric 10269 _pdbx_phasing_dm.reflns_centric 1559 _pdbx_phasing_dm.reflns 11828 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 8.900 39.248 ? ? 0.960 0.890 0.940 379 179 558 5.500 8.900 ? ? 0.900 0.740 0.870 1336 318 1654 4.400 5.500 ? ? 0.860 0.650 0.830 1724 299 2023 3.900 4.400 ? ? 0.770 0.620 0.760 1777 232 2009 3.300 3.900 ? ? 0.560 0.370 0.540 3131 346 3477 3.100 3.300 ? ? 0.340 0.200 0.320 1922 185 2107 # _phasing.method SAD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A PRO -1 ? A PRO 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ARG 2 ? A ARG 5 6 1 Y 1 A PRO 3 ? A PRO 6 7 1 Y 1 A LEU 4 ? A LEU 7 8 1 Y 1 A LYS 5 ? A LYS 8 9 1 Y 1 A GLN 6 ? A GLN 9 10 1 Y 1 A ALA 7 ? A ALA 10 11 1 Y 1 A THR 8 ? A THR 11 12 1 Y 1 A PRO 9 ? A PRO 12 13 1 Y 1 A LEU 60 ? A LEU 63 14 1 Y 1 A GLN 61 ? A GLN 64 15 1 Y 1 A ASP 62 ? A ASP 65 16 1 Y 1 A ASN 63 ? A ASN 66 17 1 Y 1 A LEU 64 ? A LEU 67 18 1 Y 1 A GLY 65 ? A GLY 68 19 1 Y 1 A VAL 66 ? A VAL 69 20 1 Y 1 B GLY -2 ? B GLY 1 21 1 Y 1 B PRO -1 ? B PRO 2 22 1 Y 1 B HIS 0 ? B HIS 3 23 1 Y 1 B MSE 1 ? B MSE 4 24 1 Y 1 B ARG 2 ? B ARG 5 25 1 Y 1 B PRO 3 ? B PRO 6 26 1 Y 1 B LEU 4 ? B LEU 7 27 1 Y 1 B LYS 5 ? B LYS 8 28 1 Y 1 B GLN 6 ? B GLN 9 29 1 Y 1 B ALA 7 ? B ALA 10 30 1 Y 1 B THR 8 ? B THR 11 31 1 Y 1 B PRO 9 ? B PRO 12 32 1 Y 1 B THR 10 ? B THR 13 33 1 Y 1 B TYR 11 ? B TYR 14 34 1 Y 1 B SER 12 ? B SER 15 35 1 Y 1 B SER 13 ? B SER 16 36 1 Y 1 B ARG 14 ? B ARG 17 37 1 Y 1 B THR 15 ? B THR 18 38 1 Y 1 B LEU 60 ? B LEU 63 39 1 Y 1 B GLN 61 ? B GLN 64 40 1 Y 1 B ASP 62 ? B ASP 65 41 1 Y 1 B ASN 63 ? B ASN 66 42 1 Y 1 B LEU 64 ? B LEU 67 43 1 Y 1 B GLY 65 ? B GLY 68 44 1 Y 1 B VAL 66 ? B VAL 69 45 1 Y 1 C GLY -2 ? C GLY 1 46 1 Y 1 C PRO -1 ? C PRO 2 47 1 Y 1 C HIS 0 ? C HIS 3 48 1 Y 1 C MSE 1 ? C MSE 4 49 1 Y 1 C ARG 2 ? C ARG 5 50 1 Y 1 C PRO 3 ? C PRO 6 51 1 Y 1 C LEU 4 ? C LEU 7 52 1 Y 1 C LYS 5 ? C LYS 8 53 1 Y 1 C GLN 6 ? C GLN 9 54 1 Y 1 C ALA 7 ? C ALA 10 55 1 Y 1 C THR 8 ? C THR 11 56 1 Y 1 C PRO 9 ? C PRO 12 57 1 Y 1 C ALA 59 ? C ALA 62 58 1 Y 1 C LEU 60 ? C LEU 63 59 1 Y 1 C GLN 61 ? C GLN 64 60 1 Y 1 C ASP 62 ? C ASP 65 61 1 Y 1 C ASN 63 ? C ASN 66 62 1 Y 1 C LEU 64 ? C LEU 67 63 1 Y 1 C GLY 65 ? C GLY 68 64 1 Y 1 C VAL 66 ? C VAL 69 65 1 Y 1 D GLY -2 ? D GLY 1 66 1 Y 1 D PRO -1 ? D PRO 2 67 1 Y 1 D HIS 0 ? D HIS 3 68 1 Y 1 D MSE 1 ? D MSE 4 69 1 Y 1 D ARG 2 ? D ARG 5 70 1 Y 1 D PRO 3 ? D PRO 6 71 1 Y 1 D LEU 4 ? D LEU 7 72 1 Y 1 D LYS 5 ? D LYS 8 73 1 Y 1 D GLN 6 ? D GLN 9 74 1 Y 1 D ALA 7 ? D ALA 10 75 1 Y 1 D THR 8 ? D THR 11 76 1 Y 1 D PRO 9 ? D PRO 12 77 1 Y 1 D THR 10 ? D THR 13 78 1 Y 1 D TYR 11 ? D TYR 14 79 1 Y 1 D SER 12 ? D SER 15 80 1 Y 1 D SER 13 ? D SER 16 81 1 Y 1 D ARG 14 ? D ARG 17 82 1 Y 1 D THR 15 ? D THR 18 83 1 Y 1 D LEU 64 ? D LEU 67 84 1 Y 1 D GLY 65 ? D GLY 68 85 1 Y 1 D VAL 66 ? D VAL 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MSE N N N N 359 MSE CA C N S 360 MSE C C N N 361 MSE O O N N 362 MSE OXT O N N 363 MSE CB C N N 364 MSE CG C N N 365 MSE SE SE N N 366 MSE CE C N N 367 MSE H H N N 368 MSE H2 H N N 369 MSE HA H N N 370 MSE HXT H N N 371 MSE HB2 H N N 372 MSE HB3 H N N 373 MSE HG2 H N N 374 MSE HG3 H N N 375 MSE HE1 H N N 376 MSE HE2 H N N 377 MSE HE3 H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 THR N N N N 433 THR CA C N S 434 THR C C N N 435 THR O O N N 436 THR CB C N R 437 THR OG1 O N N 438 THR CG2 C N N 439 THR OXT O N N 440 THR H H N N 441 THR H2 H N N 442 THR HA H N N 443 THR HB H N N 444 THR HG1 H N N 445 THR HG21 H N N 446 THR HG22 H N N 447 THR HG23 H N N 448 THR HXT H N N 449 TYR N N N N 450 TYR CA C N S 451 TYR C C N N 452 TYR O O N N 453 TYR CB C N N 454 TYR CG C Y N 455 TYR CD1 C Y N 456 TYR CD2 C Y N 457 TYR CE1 C Y N 458 TYR CE2 C Y N 459 TYR CZ C Y N 460 TYR OH O N N 461 TYR OXT O N N 462 TYR H H N N 463 TYR H2 H N N 464 TYR HA H N N 465 TYR HB2 H N N 466 TYR HB3 H N N 467 TYR HD1 H N N 468 TYR HD2 H N N 469 TYR HE1 H N N 470 TYR HE2 H N N 471 TYR HH H N N 472 TYR HXT H N N 473 VAL N N N N 474 VAL CA C N S 475 VAL C C N N 476 VAL O O N N 477 VAL CB C N N 478 VAL CG1 C N N 479 VAL CG2 C N N 480 VAL OXT O N N 481 VAL H H N N 482 VAL H2 H N N 483 VAL HA H N N 484 VAL HB H N N 485 VAL HG11 H N N 486 VAL HG12 H N N 487 VAL HG13 H N N 488 VAL HG21 H N N 489 VAL HG22 H N N 490 VAL HG23 H N N 491 VAL HXT H N N 492 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MSE N CA sing N N 354 MSE N H sing N N 355 MSE N H2 sing N N 356 MSE CA C sing N N 357 MSE CA CB sing N N 358 MSE CA HA sing N N 359 MSE C O doub N N 360 MSE C OXT sing N N 361 MSE OXT HXT sing N N 362 MSE CB CG sing N N 363 MSE CB HB2 sing N N 364 MSE CB HB3 sing N N 365 MSE CG SE sing N N 366 MSE CG HG2 sing N N 367 MSE CG HG3 sing N N 368 MSE SE CE sing N N 369 MSE CE HE1 sing N N 370 MSE CE HE2 sing N N 371 MSE CE HE3 sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TYR N CA sing N N 442 TYR N H sing N N 443 TYR N H2 sing N N 444 TYR CA C sing N N 445 TYR CA CB sing N N 446 TYR CA HA sing N N 447 TYR C O doub N N 448 TYR C OXT sing N N 449 TYR CB CG sing N N 450 TYR CB HB2 sing N N 451 TYR CB HB3 sing N N 452 TYR CG CD1 doub Y N 453 TYR CG CD2 sing Y N 454 TYR CD1 CE1 sing Y N 455 TYR CD1 HD1 sing N N 456 TYR CD2 CE2 doub Y N 457 TYR CD2 HD2 sing N N 458 TYR CE1 CZ doub Y N 459 TYR CE1 HE1 sing N N 460 TYR CE2 CZ sing Y N 461 TYR CE2 HE2 sing N N 462 TYR CZ OH sing N N 463 TYR OH HH sing N N 464 TYR OXT HXT sing N N 465 VAL N CA sing N N 466 VAL N H sing N N 467 VAL N H2 sing N N 468 VAL CA C sing N N 469 VAL CA CB sing N N 470 VAL CA HA sing N N 471 VAL C O doub N N 472 VAL C OXT sing N N 473 VAL CB CG1 sing N N 474 VAL CB CG2 sing N N 475 VAL CB HB sing N N 476 VAL CG1 HG11 sing N N 477 VAL CG1 HG12 sing N N 478 VAL CG1 HG13 sing N N 479 VAL CG2 HG21 sing N N 480 VAL CG2 HG22 sing N N 481 VAL CG2 HG23 sing N N 482 VAL OXT HXT sing N N 483 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3QOQ 'double helix' 3QOQ 'a-form double helix' 3QOQ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 E DA 1 1_555 F DT 18 1_555 -0.216 -0.449 0.541 2.355 -9.167 -2.720 1 E_DA1:DT36_F E 1 ? F 36 ? 20 1 1 E DC 2 1_555 F DG 17 1_555 -0.160 -0.238 0.515 -5.425 -5.731 -0.279 2 E_DC2:DG35_F E 2 ? F 35 ? 19 1 1 E DT 3 1_555 F DA 16 1_555 0.473 -0.295 0.035 0.484 -5.844 -9.518 3 E_DT3:DA34_F E 3 ? F 34 ? 20 1 1 E DG 4 1_555 F DC 15 1_555 0.359 -0.485 0.597 6.310 -8.885 -9.246 4 E_DG4:DC33_F E 4 ? F 33 ? 19 1 1 E DG 5 1_555 F DC 14 1_555 0.028 -0.377 -0.132 2.216 3.374 -1.905 5 E_DG5:DC32_F E 5 ? F 32 ? 19 1 1 E DC 6 1_555 F DG 13 1_555 0.005 -0.455 0.107 8.509 -9.387 -6.102 6 E_DC6:DG31_F E 6 ? F 31 ? 19 1 1 E DA 7 1_555 F DT 12 1_555 0.548 -0.346 0.294 9.012 -14.320 -5.892 7 E_DA7:DT30_F E 7 ? F 30 ? 20 1 1 E DA 8 1_555 F DT 11 1_555 0.382 -0.351 0.347 3.255 -13.391 -3.728 8 E_DA8:DT29_F E 8 ? F 29 ? 20 1 1 E DA 9 1_555 F DT 10 1_555 0.193 -0.317 0.072 -2.042 -11.706 -3.149 9 E_DA9:DT28_F E 9 ? F 28 ? 20 1 1 E DA 10 1_555 F DT 9 1_555 -0.022 -0.309 0.241 1.259 -14.315 1.145 10 E_DA10:DT27_F E 10 ? F 27 ? 20 1 1 E DC 11 1_555 F DG 8 1_555 0.086 -0.412 0.287 -7.103 -6.536 -0.483 11 E_DC11:DG26_F E 11 ? F 26 ? 19 1 1 E DG 12 1_555 F DC 7 1_555 -0.363 -0.318 0.296 0.675 -10.593 -2.359 12 E_DG12:DC25_F E 12 ? F 25 ? 19 1 1 E DC 13 1_555 F DG 6 1_555 -0.109 -0.364 -0.088 -0.682 2.912 -2.150 13 E_DC13:DG24_F E 13 ? F 24 ? 19 1 1 E DC 14 1_555 F DG 5 1_555 -0.228 -0.395 0.082 0.452 -7.516 -4.568 14 E_DC14:DG23_F E 14 ? F 23 ? 19 1 1 E DG 15 1_555 F DC 4 1_555 0.053 -0.460 0.025 9.529 6.348 -2.654 15 E_DG15:DC22_F E 15 ? F 22 ? 19 1 1 E DG 16 1_555 F DC 3 1_555 -0.659 -0.462 0.301 8.789 -3.564 -0.113 16 E_DG16:DC21_F E 16 ? F 21 ? 19 1 1 E DC 17 1_555 F DG 2 1_555 0.374 -0.477 0.355 -3.430 -8.819 1.325 17 E_DC17:DG20_F E 17 ? F 20 ? 19 1 1 E DA 18 1_555 F DT 1 1_555 0.132 -0.343 -0.099 -1.458 3.746 -1.418 18 E_DA18:DT19_F E 18 ? F 19 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 E DA 1 1_555 F DT 18 1_555 E DC 2 1_555 F DG 17 1_555 0.186 -0.808 3.465 1.054 0.956 32.987 -1.593 -0.139 3.445 1.682 -1.855 33.016 1 EE_DA1DC2:DG35DT36_FF E 1 ? F 36 ? E 2 ? F 35 ? 1 E DC 2 1_555 F DG 17 1_555 E DT 3 1_555 F DA 16 1_555 0.091 -0.066 3.134 5.583 4.250 38.459 -0.589 0.509 3.092 6.387 -8.391 39.070 2 EE_DC2DT3:DA34DG35_FF E 2 ? F 35 ? E 3 ? F 34 ? 1 E DT 3 1_555 F DA 16 1_555 E DG 4 1_555 F DC 15 1_555 -0.682 0.964 3.171 -10.178 -0.178 43.686 1.281 -0.025 3.240 -0.236 13.460 44.800 3 EE_DT3DG4:DC33DA34_FF E 3 ? F 34 ? E 4 ? F 33 ? 1 E DG 4 1_555 F DC 15 1_555 E DG 5 1_555 F DC 14 1_555 0.693 -0.817 3.577 3.490 -3.709 23.881 -0.627 -0.410 3.720 -8.834 -8.314 24.410 4 EE_DG4DG5:DC32DC33_FF E 4 ? F 33 ? E 5 ? F 32 ? 1 E DG 5 1_555 F DC 14 1_555 E DC 6 1_555 F DG 13 1_555 -1.326 -0.321 3.158 -3.554 0.787 32.439 -0.706 1.751 3.273 1.404 6.336 32.637 5 EE_DG5DC6:DG31DC32_FF E 5 ? F 32 ? E 6 ? F 31 ? 1 E DC 6 1_555 F DG 13 1_555 E DA 7 1_555 F DT 12 1_555 0.101 0.746 3.333 0.819 3.717 37.509 0.658 -0.047 3.390 5.763 -1.269 37.694 6 EE_DC6DA7:DT30DG31_FF E 6 ? F 31 ? E 7 ? F 30 ? 1 E DA 7 1_555 F DT 12 1_555 E DA 8 1_555 F DT 11 1_555 0.455 -0.577 3.344 0.341 2.066 33.918 -1.324 -0.723 3.309 3.538 -0.583 33.981 7 EE_DA7DA8:DT29DT30_FF E 7 ? F 30 ? E 8 ? F 29 ? 1 E DA 8 1_555 F DT 11 1_555 E DA 9 1_555 F DT 10 1_555 0.088 -0.655 3.360 2.299 -4.150 35.976 -0.449 0.193 3.411 -6.682 -3.703 36.277 8 EE_DA8DA9:DT28DT29_FF E 8 ? F 29 ? E 9 ? F 28 ? 1 E DA 9 1_555 F DT 10 1_555 E DA 10 1_555 F DT 9 1_555 0.242 -0.397 3.060 -2.747 2.283 35.919 -0.940 -0.752 3.004 3.690 4.440 36.091 9 EE_DA9DA10:DT27DT28_FF E 9 ? F 28 ? E 10 ? F 27 ? 1 E DA 10 1_555 F DT 9 1_555 E DC 11 1_555 F DG 8 1_555 -0.538 -1.129 3.418 -1.222 -0.826 35.089 -1.741 0.699 3.459 -1.370 2.026 35.119 10 EE_DA10DC11:DG26DT27_FF E 10 ? F 27 ? E 11 ? F 26 ? 1 E DC 11 1_555 F DG 8 1_555 E DG 12 1_555 F DC 7 1_555 -0.375 -0.066 3.101 -2.410 3.319 27.804 -0.879 0.233 3.093 6.861 4.981 28.099 11 EE_DC11DG12:DC25DG26_FF E 11 ? F 26 ? E 12 ? F 25 ? 1 E DG 12 1_555 F DC 7 1_555 E DC 13 1_555 F DG 6 1_555 1.207 -0.373 3.369 3.902 0.512 36.482 -0.666 -1.359 3.470 0.815 -6.210 36.687 12 EE_DG12DC13:DG24DC25_FF E 12 ? F 25 ? E 13 ? F 24 ? 1 E DC 13 1_555 F DG 6 1_555 E DC 14 1_555 F DG 5 1_555 -0.815 -0.507 3.356 -0.117 -0.674 26.771 -0.914 1.729 3.371 -1.455 0.253 26.779 13 EE_DC13DC14:DG23DG24_FF E 13 ? F 24 ? E 14 ? F 23 ? 1 E DC 14 1_555 F DG 5 1_555 E DG 15 1_555 F DC 4 1_555 1.367 0.914 3.236 3.397 -0.569 39.424 1.418 -1.619 3.325 -0.842 -5.024 39.568 14 EE_DC14DG15:DC22DG23_FF E 14 ? F 23 ? E 15 ? F 22 ? 1 E DG 15 1_555 F DC 4 1_555 E DG 16 1_555 F DC 3 1_555 0.333 -0.963 3.368 -5.030 0.944 23.999 -2.562 -2.359 3.192 2.238 11.924 24.531 15 EE_DG15DG16:DC21DC22_FF E 15 ? F 22 ? E 16 ? F 21 ? 1 E DG 16 1_555 F DC 3 1_555 E DC 17 1_555 F DG 2 1_555 0.215 -1.557 3.673 -0.036 -3.942 39.527 -1.766 -0.321 3.805 -5.811 0.054 39.715 16 EE_DG16DC17:DG20DC21_FF E 16 ? F 21 ? E 17 ? F 20 ? 1 E DC 17 1_555 F DG 2 1_555 E DA 18 1_555 F DT 1 1_555 0.018 -1.388 3.191 4.887 2.470 30.944 -3.009 0.846 3.041 4.585 -9.070 31.414 17 EE_DC17DA18:DT19DG20_FF E 17 ? F 20 ? E 18 ? F 19 ? # _atom_sites.entry_id 3QOQ _atom_sites.fract_transf_matrix[1][1] 0.007724 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007724 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006555 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P SE # loop_