HEADER IMMUNE SYSTEM 10-FEB-11 3QOS OBSLTE 24-FEB-16 3QOS 5I1D TITLE CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY 3-23/B3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B3 (IGKV4-1) LIGHT CHAIN; COMPND 3 CHAIN: L, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 3-23 (IGHV3-23) HEAVY CHAIN; COMPND 7 CHAIN: H, B; COMPND 8 FRAGMENT: FD; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 KEYWDS IMMUNOGLOBULIN FOLD, MONOCLONAL ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,T.MALIA,G.GILLILAND REVDAT 3 24-FEB-16 3QOS 1 OBSLTE VERSN REVDAT 2 22-JUN-11 3QOS 1 JRNL REVDAT 1 08-JUN-11 3QOS 0 JRNL AUTH T.J.MALIA,G.OBMOLOVA,J.C.ALMAGRO,G.L.GILLILAND,A.TEPLYAKOV JRNL TITL CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY 3-23/B3. JRNL REF MOL.IMMUNOL. V. 48 1586 2011 JRNL REFN ISSN 0161-5890 JRNL PMID 21605907 JRNL DOI 10.1016/J.MOLIMM.2011.04.020 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 72088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6778 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9219 ; 1.300 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 864 ; 6.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;35.418 ;24.715 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1078 ;13.696 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.478 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1033 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5070 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2745 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4550 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 427 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.175 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.084 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4443 ; 2.676 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6971 ; 4.283 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2722 ;24.113 ;88.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2248 ;25.743 ;88.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.6L REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.6L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.400 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1LVE AND 2B2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 2% PEG400, 0.1 REMARK 280 M HEPES, PH 7.50, CRYOPROTECTANT: MOTHER LIQUOR + 20% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.33500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.33500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 134 REMARK 465 LYS H 135 REMARK 465 SER H 136 REMARK 465 THR H 137 REMARK 465 SER H 138 REMARK 465 GLY H 139 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 GLU A 219 REMARK 465 CYS A 220 REMARK 465 GLY B 101 REMARK 465 ILE B 102 REMARK 465 TYR B 103 REMARK 465 LYS B 220 REMARK 465 SER B 221 REMARK 465 CYS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 57 -28.93 66.84 REMARK 500 ASN L 158 -18.12 77.95 REMARK 500 ASP H 150 64.96 71.49 REMARK 500 THR H 166 -32.22 -130.30 REMARK 500 ALA A 57 -28.78 59.88 REMARK 500 ASN A 144 74.23 46.89 REMARK 500 SER B 54 5.54 -151.66 REMARK 500 ALA B 92 159.46 178.53 REMARK 500 ASP B 150 58.09 70.54 REMARK 500 SER B 162 29.16 49.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1007 DBREF 3QOS L 1 220 PDB 3QOS 3QOS 1 220 DBREF 3QOS A 1 220 PDB 3QOS 3QOS 1 220 DBREF 3QOS H 1 228 PDB 3QOS 3QOS 1 228 DBREF 3QOS B 1 228 PDB 3QOS 3QOS 1 228 SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR TYR SER THR PRO LEU THR PHE SEQRES 9 L 220 GLY GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 228 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 228 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 228 PHE THR PHE SER SER TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 H 228 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA ILE SER SEQRES 5 H 228 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 228 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 228 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 228 ALA VAL TYR TYR CYS ALA LYS TYR ASP GLY ILE TYR GLY SEQRES 9 H 228 GLU LEU ASP PHE TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 228 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 228 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 228 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 228 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 228 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 228 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 228 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 228 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 H 228 CYS HIS HIS HIS HIS HIS HIS SEQRES 1 A 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 A 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 A 220 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 A 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 A 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 A 220 TYR TYR CYS GLN GLN TYR TYR SER THR PRO LEU THR PHE SEQRES 9 A 220 GLY GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 10 A 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 A 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 A 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 A 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 A 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 A 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 A 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 A 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 228 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 228 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 228 PHE THR PHE SER SER TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 B 228 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA ILE SER SEQRES 5 B 228 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 228 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 B 228 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 228 ALA VAL TYR TYR CYS ALA LYS TYR ASP GLY ILE TYR GLY SEQRES 9 B 228 GLU LEU ASP PHE TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 B 228 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 B 228 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 B 228 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 B 228 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 B 228 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 B 228 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 B 228 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 B 228 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 B 228 CYS HIS HIS HIS HIS HIS HIS HET SO4 L1004 5 HET GOL L1005 6 HET SO4 H1002 5 HET GOL H1006 6 HET SO4 A1003 5 HET SO4 B1001 5 HET GOL B1007 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 12 HOH *333(H2 O) HELIX 1 1 GLN L 85 VAL L 89 5 5 HELIX 2 2 SER L 127 SER L 133 1 7 HELIX 3 3 LYS L 189 GLU L 193 1 5 HELIX 4 4 THR H 28 TYR H 32 5 5 HELIX 5 5 ARG H 87 THR H 91 5 5 HELIX 6 6 SER H 162 ALA H 164 5 3 HELIX 7 7 SER H 193 GLY H 196 5 4 HELIX 8 8 LYS H 207 ASN H 210 5 4 HELIX 9 9 GLN A 85 VAL A 89 5 5 HELIX 10 10 SER A 127 LYS A 132 1 6 HELIX 11 11 LYS A 189 LYS A 194 1 6 HELIX 12 12 THR B 28 TYR B 32 5 5 HELIX 13 13 ARG B 87 THR B 91 5 5 HELIX 14 14 SER B 162 ALA B 164 5 3 HELIX 15 15 SER B 193 LEU B 195 5 3 HELIX 16 16 LYS B 207 ASN B 210 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 A 4 ASP L 76 ILE L 81 -1 O ILE L 81 N ALA L 19 SHEET 4 A 4 PHE L 68 SER L 73 -1 N SER L 69 O THR L 80 SHEET 1 B 6 SER L 10 SER L 14 0 SHEET 2 B 6 THR L 108 LYS L 113 1 O GLU L 111 N LEU L 11 SHEET 3 B 6 ALA L 90 GLN L 96 -1 N ALA L 90 O VAL L 110 SHEET 4 B 6 LEU L 39 GLN L 44 -1 N ALA L 40 O GLN L 95 SHEET 5 B 6 LYS L 51 TYR L 55 -1 O LEU L 53 N TRP L 41 SHEET 6 B 6 THR L 59 ARG L 60 -1 O THR L 59 N TYR L 55 SHEET 1 C 4 SER L 10 SER L 14 0 SHEET 2 C 4 THR L 108 LYS L 113 1 O GLU L 111 N LEU L 11 SHEET 3 C 4 ALA L 90 GLN L 96 -1 N ALA L 90 O VAL L 110 SHEET 4 C 4 THR L 103 PHE L 104 -1 O THR L 103 N GLN L 96 SHEET 1 D 2 LEU L 30 TYR L 31 0 SHEET 2 D 2 LYS L 36 ASN L 37 -1 O LYS L 36 N TYR L 31 SHEET 1 E 4 SER L 120 PHE L 124 0 SHEET 2 E 4 THR L 135 PHE L 145 -1 O LEU L 141 N PHE L 122 SHEET 3 E 4 TYR L 179 SER L 188 -1 O LEU L 187 N ALA L 136 SHEET 4 E 4 SER L 165 VAL L 169 -1 N GLN L 166 O THR L 184 SHEET 1 F 4 ALA L 159 GLN L 161 0 SHEET 2 F 4 LYS L 151 VAL L 156 -1 N TRP L 154 O GLN L 161 SHEET 3 F 4 VAL L 197 THR L 203 -1 O GLU L 201 N GLN L 153 SHEET 4 F 4 VAL L 211 ASN L 216 -1 O VAL L 211 N VAL L 202 SHEET 1 G 4 GLN H 3 SER H 7 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 O ALA H 23 N LEU H 5 SHEET 3 G 4 THR H 78 MET H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 G 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 H 6 LEU H 11 VAL H 12 0 SHEET 2 H 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 H 6 ALA H 92 TYR H 99 -1 N TYR H 94 O THR H 113 SHEET 4 H 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 H 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 H 6 THR H 58 TYR H 60 -1 O TYR H 59 N ALA H 50 SHEET 1 I 4 LEU H 11 VAL H 12 0 SHEET 2 I 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 I 4 ALA H 92 TYR H 99 -1 N TYR H 94 O THR H 113 SHEET 4 I 4 LEU H 106 TRP H 109 -1 O PHE H 108 N LYS H 98 SHEET 1 J 4 SER H 126 LEU H 130 0 SHEET 2 J 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 J 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 J 4 VAL H 169 THR H 171 -1 N HIS H 170 O VAL H 187 SHEET 1 K 4 SER H 126 LEU H 130 0 SHEET 2 K 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 K 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 K 4 VAL H 175 LEU H 176 -1 N VAL H 175 O SER H 183 SHEET 1 L 3 THR H 157 TRP H 160 0 SHEET 2 L 3 ILE H 201 HIS H 206 -1 O ASN H 203 N SER H 159 SHEET 3 L 3 THR H 211 LYS H 216 -1 O VAL H 213 N VAL H 204 SHEET 1 M 4 MET A 4 SER A 7 0 SHEET 2 M 4 ALA A 19 SER A 25 -1 O LYS A 24 N THR A 5 SHEET 3 M 4 ASP A 76 ILE A 81 -1 O LEU A 79 N ILE A 21 SHEET 4 M 4 PHE A 68 SER A 73 -1 N SER A 69 O THR A 80 SHEET 1 N 6 SER A 10 SER A 14 0 SHEET 2 N 6 THR A 108 LYS A 113 1 O GLU A 111 N LEU A 11 SHEET 3 N 6 ALA A 90 GLN A 96 -1 N ALA A 90 O VAL A 110 SHEET 4 N 6 LEU A 39 GLN A 44 -1 N ALA A 40 O GLN A 95 SHEET 5 N 6 LYS A 51 TYR A 55 -1 O LEU A 53 N TRP A 41 SHEET 6 N 6 THR A 59 ARG A 60 -1 O THR A 59 N TYR A 55 SHEET 1 O 4 SER A 10 SER A 14 0 SHEET 2 O 4 THR A 108 LYS A 113 1 O GLU A 111 N LEU A 11 SHEET 3 O 4 ALA A 90 GLN A 96 -1 N ALA A 90 O VAL A 110 SHEET 4 O 4 THR A 103 PHE A 104 -1 O THR A 103 N GLN A 96 SHEET 1 P 2 LEU A 30 TYR A 31 0 SHEET 2 P 2 LYS A 36 ASN A 37 -1 O LYS A 36 N TYR A 31 SHEET 1 Q 4 SER A 120 PHE A 124 0 SHEET 2 Q 4 THR A 135 PHE A 145 -1 O LEU A 141 N PHE A 122 SHEET 3 Q 4 TYR A 179 SER A 188 -1 O LEU A 185 N VAL A 138 SHEET 4 Q 4 SER A 165 VAL A 169 -1 N SER A 168 O SER A 182 SHEET 1 R 4 ALA A 159 LEU A 160 0 SHEET 2 R 4 LYS A 151 VAL A 156 -1 N VAL A 156 O ALA A 159 SHEET 3 R 4 VAL A 197 THR A 203 -1 O GLU A 201 N GLN A 153 SHEET 4 R 4 VAL A 211 ASN A 216 -1 O LYS A 213 N CYS A 200 SHEET 1 S 4 GLN B 3 SER B 7 0 SHEET 2 S 4 LEU B 18 SER B 25 -1 O ALA B 23 N LEU B 5 SHEET 3 S 4 THR B 78 MET B 83 -1 O LEU B 81 N LEU B 20 SHEET 4 S 4 PHE B 68 ARG B 72 -1 N SER B 71 O TYR B 80 SHEET 1 T 6 LEU B 11 VAL B 12 0 SHEET 2 T 6 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 T 6 ALA B 92 TYR B 99 -1 N TYR B 94 O THR B 113 SHEET 4 T 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 T 6 LEU B 45 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 T 6 THR B 58 TYR B 60 -1 O TYR B 59 N ALA B 50 SHEET 1 U 4 LEU B 11 VAL B 12 0 SHEET 2 U 4 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 U 4 ALA B 92 TYR B 99 -1 N TYR B 94 O THR B 113 SHEET 4 U 4 LEU B 106 TRP B 109 -1 O PHE B 108 N LYS B 98 SHEET 1 V 4 SER B 126 LEU B 130 0 SHEET 2 V 4 THR B 141 TYR B 151 -1 O LEU B 147 N PHE B 128 SHEET 3 V 4 TYR B 182 PRO B 191 -1 O LEU B 184 N VAL B 148 SHEET 4 V 4 VAL B 169 THR B 171 -1 N HIS B 170 O VAL B 187 SHEET 1 W 4 SER B 126 LEU B 130 0 SHEET 2 W 4 THR B 141 TYR B 151 -1 O LEU B 147 N PHE B 128 SHEET 3 W 4 TYR B 182 PRO B 191 -1 O LEU B 184 N VAL B 148 SHEET 4 W 4 VAL B 175 LEU B 176 -1 N VAL B 175 O SER B 183 SHEET 1 X 3 THR B 157 TRP B 160 0 SHEET 2 X 3 TYR B 200 HIS B 206 -1 O ASN B 203 N SER B 159 SHEET 3 X 3 THR B 211 VAL B 217 -1 O VAL B 213 N VAL B 204 SSBOND 1 CYS L 23 CYS L 94 1555 1555 2.05 SSBOND 2 CYS L 140 CYS L 200 1555 1555 2.01 SSBOND 3 CYS L 220 CYS H 222 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.02 SSBOND 5 CYS H 146 CYS H 202 1555 1555 2.06 SSBOND 6 CYS A 23 CYS A 94 1555 1555 2.05 SSBOND 7 CYS A 140 CYS A 200 1555 1555 2.03 SSBOND 8 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 9 CYS B 146 CYS B 202 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -3.27 CISPEP 2 THR L 100 PRO L 101 0 1.85 CISPEP 3 TYR L 146 PRO L 147 0 1.76 CISPEP 4 PHE H 152 PRO H 153 0 -10.18 CISPEP 5 GLU H 154 PRO H 155 0 -7.58 CISPEP 6 SER A 7 PRO A 8 0 -6.75 CISPEP 7 THR A 100 PRO A 101 0 2.33 CISPEP 8 TYR A 146 PRO A 147 0 -0.69 CISPEP 9 PHE B 152 PRO B 153 0 -8.07 CISPEP 10 GLU B 154 PRO B 155 0 -7.47 SITE 1 AC1 4 GLN L 43 LYS L 45 GLN L 48 HOH L 298 SITE 1 AC2 7 PRO H 129 LYS H 220 HOH H 338 SER L 127 SITE 2 AC2 7 ASP L 128 GLU L 129 HOH L 222 SITE 1 AC3 4 SER A 33 PHE H 27 THR H 28 TYR H 32 SITE 1 AC4 6 SER B 121 HOH B 229 HOH B 255 LYS H 123 SITE 2 AC4 6 GLY H 124 HOH H 241 SITE 1 AC5 3 LYS A 45 GLN A 48 HOH A 230 SITE 1 AC6 9 ALA B 120 SER B 121 HOH B 231 HOH B 241 SITE 2 AC6 9 HOH B 255 HOH B 280 GLN L 153 LYS L 155 SITE 3 AC6 9 HOH L 286 SITE 1 AC7 7 GLU B 154 PRO B 155 VAL B 156 PHE B 172 SITE 2 AC7 7 PRO B 173 ALA B 174 LEU B 184 CRYST1 62.670 111.010 159.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006251 0.00000