HEADER IMMUNE SYSTEM 10-FEB-11 3QOT OBSLTE 24-FEB-16 3QOT 5I18 TITLE CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY 1-69/B3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B3 (IGKV4-1) LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 1-69 (IGHV1-69) HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: FD; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 KEYWDS IMMUNOGLOBULIN FOLD, MONOCLONAL ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,T.MALIA,G.GILLILAND REVDAT 3 24-FEB-16 3QOT 1 OBSLTE REVDAT 2 26-OCT-11 3QOT 1 JRNL REVDAT 1 10-AUG-11 3QOT 0 JRNL AUTH J.C.ALMAGRO,M.P.BEAVERS,F.HERNANDEZ-GUZMAN,J.MAIER, JRNL AUTH 2 J.SHAULSKY,K.BUTENHOF,P.LABUTE,N.THORSTEINSON,K.KELLY, JRNL AUTH 3 A.TEPLYAKOV,J.LUO,R.SWEET,G.L.GILLILAND JRNL TITL ANTIBODY MODELING ASSESSMENT. JRNL REF PROTEINS V. 79 3050 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21935986 JRNL DOI 10.1002/PROT.23130 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 36098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 753 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2276 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3379 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4597 ; 1.252 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 6.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;38.291 ;24.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 541 ;12.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2518 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1453 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2304 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 379 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2201 ; 1.941 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3485 ; 2.943 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1359 ;10.524 ;88.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1112 ;11.945 ;88.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 0 L 113 REMARK 3 RESIDUE RANGE : H 2 H 119 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7058 38.4410 20.3337 REMARK 3 T TENSOR REMARK 3 T11: -0.1326 T22: -0.1424 REMARK 3 T33: -0.1032 T12: 0.0031 REMARK 3 T13: 0.0294 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.2838 L22: 1.5995 REMARK 3 L33: 1.0716 L12: 1.0038 REMARK 3 L13: 0.7063 L23: 0.7705 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.0589 S13: 0.0209 REMARK 3 S21: -0.0624 S22: 0.0442 S23: -0.1313 REMARK 3 S31: -0.0279 S32: 0.1297 S33: -0.0651 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 114 L 218 REMARK 3 RESIDUE RANGE : H 120 H 219 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8059 23.8183 47.9145 REMARK 3 T TENSOR REMARK 3 T11: -0.1420 T22: -0.1057 REMARK 3 T33: -0.1190 T12: -0.0063 REMARK 3 T13: 0.0012 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.9018 L22: 0.8618 REMARK 3 L33: 2.9485 L12: 0.4080 REMARK 3 L13: 0.5917 L23: 0.8964 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: -0.1890 S13: -0.0634 REMARK 3 S21: 0.1020 S22: 0.0049 S23: -0.0398 REMARK 3 S31: 0.0616 S32: 0.0293 S33: -0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.6L REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.6L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37021 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 26.600 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 16.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1LVE AND 2DD8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 8% ETHYLENE GLYCOL, 0.1 M REMARK 280 HEPES, PH 7.50, CRYOPROTECTANT: 25% GLYCEROL, 15% PEG8000, 10% REMARK 280 ETHYLENE GLYCOL, 0.1 M HEPES, PH 7.50, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.03000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.03000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.03000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.03000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 397 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 219 REMARK 465 CYS L 220 REMARK 465 GLN H 1 REMARK 465 SER H 134 REMARK 465 LYS H 135 REMARK 465 SER H 136 REMARK 465 THR H 137 REMARK 465 SER H 138 REMARK 465 GLY H 139 REMARK 465 LYS H 220 REMARK 465 SER H 221 REMARK 465 CYS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 57 -40.20 71.10 REMARK 500 ALA L 90 178.11 176.69 REMARK 500 ASN L 158 -5.15 69.28 REMARK 500 SER H 25 -172.54 -69.74 REMARK 500 THR H 28 155.34 171.07 REMARK 500 SER H 30 -132.79 53.00 REMARK 500 TYR H 103 -106.18 -118.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1004 DBREF 3QOT L 0 220 PDB 3QOT 3QOT 0 220 DBREF 3QOT H 1 228 PDB 3QOT 3QOT 1 228 SEQRES 1 L 221 MET ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA SEQRES 2 L 221 VAL SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SEQRES 3 L 221 SER GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR SEQRES 4 L 221 LEU ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS SEQRES 5 L 221 LEU LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL SEQRES 6 L 221 PRO ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE SEQRES 7 L 221 THR LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA SEQRES 8 L 221 VAL TYR TYR CYS GLN GLN TYR TYR SER THR PRO LEU THR SEQRES 9 L 221 PHE GLY GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL SEQRES 10 L 221 ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU SEQRES 11 L 221 GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU SEQRES 12 L 221 ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS SEQRES 13 L 221 VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER SEQRES 14 L 221 VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SEQRES 15 L 221 SER SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS SEQRES 16 L 221 HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SEQRES 17 L 221 SER SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 228 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 228 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 228 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 H 228 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 228 PRO ILE PHE GLY THR ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 228 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 H 228 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 228 ALA VAL TYR TYR CYS ALA ARG TYR ASP GLY ILE TYR GLY SEQRES 9 H 228 GLU LEU ASP PHE TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 228 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 228 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 228 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 228 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 228 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 228 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 228 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 228 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 H 228 CYS HIS HIS HIS HIS HIS HIS HET GOL L1001 6 HET GOL L1002 6 HET GOL L1003 6 HET GOL L1004 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *401(H2 O) HELIX 1 1 GLN L 85 VAL L 89 5 5 HELIX 2 2 SER L 127 LYS L 132 1 6 HELIX 3 3 LYS L 189 HIS L 195 1 7 HELIX 4 4 GLY H 26 THR H 28 5 3 HELIX 5 5 GLN H 62 GLN H 65 5 4 HELIX 6 6 GLU H 74 THR H 76 5 3 HELIX 7 7 ARG H 87 THR H 91 5 5 HELIX 8 8 SER H 162 ALA H 164 5 3 HELIX 9 9 SER H 193 LEU H 195 5 3 HELIX 10 10 LYS H 207 ASN H 210 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 A 4 ASP L 76 ILE L 81 -1 O LEU L 79 N ILE L 21 SHEET 4 A 4 PHE L 68 SER L 73 -1 N SER L 69 O THR L 80 SHEET 1 B 6 SER L 10 SER L 14 0 SHEET 2 B 6 THR L 108 LYS L 113 1 O LYS L 109 N LEU L 11 SHEET 3 B 6 ALA L 90 GLN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 B 6 LEU L 39 GLN L 44 -1 N ALA L 40 O GLN L 95 SHEET 5 B 6 LYS L 51 TYR L 55 -1 O LEU L 53 N TRP L 41 SHEET 6 B 6 THR L 59 ARG L 60 -1 O THR L 59 N TYR L 55 SHEET 1 C 4 SER L 10 SER L 14 0 SHEET 2 C 4 THR L 108 LYS L 113 1 O LYS L 109 N LEU L 11 SHEET 3 C 4 ALA L 90 GLN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 C 4 THR L 103 PHE L 104 -1 O THR L 103 N GLN L 96 SHEET 1 D 4 SER L 120 PHE L 124 0 SHEET 2 D 4 THR L 135 PHE L 145 -1 O LEU L 141 N PHE L 122 SHEET 3 D 4 TYR L 179 SER L 188 -1 O TYR L 179 N PHE L 145 SHEET 4 D 4 SER L 165 VAL L 169 -1 N GLN L 166 O THR L 184 SHEET 1 E 4 ALA L 159 LEU L 160 0 SHEET 2 E 4 LYS L 151 VAL L 156 -1 N VAL L 156 O ALA L 159 SHEET 3 E 4 VAL L 197 THR L 203 -1 O GLU L 201 N GLN L 153 SHEET 4 E 4 VAL L 211 ASN L 216 -1 O VAL L 211 N VAL L 202 SHEET 1 F 4 LEU H 4 GLN H 6 0 SHEET 2 F 4 VAL H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 F 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 F 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 G 6 GLU H 10 LYS H 12 0 SHEET 2 G 6 THR H 113 VAL H 117 1 O THR H 116 N LYS H 12 SHEET 3 G 6 ALA H 92 TYR H 99 -1 N ALA H 92 O VAL H 115 SHEET 4 G 6 ALA H 33 GLN H 39 -1 N SER H 35 O ALA H 97 SHEET 5 G 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 G 6 ALA H 58 TYR H 60 -1 O ASN H 59 N GLY H 50 SHEET 1 H 4 GLU H 10 LYS H 12 0 SHEET 2 H 4 THR H 113 VAL H 117 1 O THR H 116 N LYS H 12 SHEET 3 H 4 ALA H 92 TYR H 99 -1 N ALA H 92 O VAL H 115 SHEET 4 H 4 PHE H 108 TRP H 109 -1 O PHE H 108 N ARG H 98 SHEET 1 I 4 SER H 126 LEU H 130 0 SHEET 2 I 4 THR H 141 TYR H 151 -1 O LEU H 147 N PHE H 128 SHEET 3 I 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 I 4 VAL H 169 THR H 171 -1 N HIS H 170 O VAL H 187 SHEET 1 J 4 SER H 126 LEU H 130 0 SHEET 2 J 4 THR H 141 TYR H 151 -1 O LEU H 147 N PHE H 128 SHEET 3 J 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 J 4 VAL H 175 LEU H 176 -1 N VAL H 175 O SER H 183 SHEET 1 K 3 THR H 157 TRP H 160 0 SHEET 2 K 3 ILE H 201 HIS H 206 -1 O ASN H 203 N SER H 159 SHEET 3 K 3 THR H 211 LYS H 216 -1 O VAL H 213 N VAL H 204 SSBOND 1 CYS L 23 CYS L 94 1555 1555 2.08 SSBOND 2 CYS L 140 CYS L 200 1555 1555 2.00 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 4 CYS H 146 CYS H 202 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -3.42 CISPEP 2 THR L 100 PRO L 101 0 -0.19 CISPEP 3 TYR L 146 PRO L 147 0 -1.44 CISPEP 4 PHE H 152 PRO H 153 0 -12.97 CISPEP 5 GLU H 154 PRO H 155 0 -6.13 SITE 1 AC1 9 HIS H 170 THR L 170 GLU L 171 ASP L 173 SITE 2 AC1 9 SER L 174 HOH L 240 HOH L 339 HOH L 379 SITE 3 AC1 9 GOL L1004 SITE 1 AC2 11 PHE H 172 PRO H 173 VAL H 175 SER H 183 SITE 2 AC2 11 LEU H 184 SER H 185 SER L 168 SER L 182 SITE 3 AC2 11 SER L 183 THR L 184 HOH L 402 SITE 1 AC3 6 SER L 58 ARG L 60 SER L 69 GLY L 70 SITE 2 AC3 6 LYS L 132 HOH L 428 SITE 1 AC4 9 THR H 166 ASP L 173 SER L 174 LYS L 175 SITE 2 AC4 9 HOH L 228 HOH L 339 HOH L 354 HOH L 365 SITE 3 AC4 9 GOL L1001 CRYST1 120.060 120.060 64.160 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015586 0.00000