HEADER PROTEIN BINDING 10-FEB-11 3QOU TITLE CRYSTAL STRUCTURE OF E. COLI YBBN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YBBN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: YBBN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS THIOREDOXIN-LIKE FOLD, TETRATRICOPEPTIDE REPEAT, LYSINE KEYWDS 2 DIMETHYLATION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.LIN,M.A.WILSON REVDAT 6 13-SEP-23 3QOU 1 REMARK SEQADV LINK REVDAT 5 08-NOV-17 3QOU 1 REMARK REVDAT 4 27-MAY-15 3QOU 1 REMARK VERSN REVDAT 3 22-JUN-11 3QOU 1 JRNL REVDAT 2 11-MAY-11 3QOU 1 REMARK REVDAT 1 23-FEB-11 3QOU 0 JRNL AUTH J.LIN,M.A.WILSON JRNL TITL ESCHERICHIA COLI THIOREDOXIN-LIKE PROTEIN YBBN CONTAINS AN JRNL TITL 2 ATYPICAL TETRATRICOPEPTIDE REPEAT MOTIF AND IS A NEGATIVE JRNL TITL 3 REGULATOR OF GROEL. JRNL REF J.BIOL.CHEM. V. 286 19459 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21498507 JRNL DOI 10.1074/JBC.M111.238741 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 25508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1337 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -1.35000 REMARK 3 B33 (A**2) : 1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2321 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3162 ; 1.013 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 5.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;36.045 ;26.475 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;15.048 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1785 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1438 ; 1.142 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2309 ; 1.868 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 883 ; 3.213 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 5.209 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4043 24.6680 45.3523 REMARK 3 T TENSOR REMARK 3 T11: 1.1641 T22: 0.5736 REMARK 3 T33: 0.5141 T12: -0.1390 REMARK 3 T13: -0.1467 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 10.0052 L22: 3.5009 REMARK 3 L33: 19.6895 L12: 2.0705 REMARK 3 L13: 2.6214 L23: 3.1831 REMARK 3 S TENSOR REMARK 3 S11: 0.4915 S12: -0.6616 S13: -1.5262 REMARK 3 S21: 0.9825 S22: -0.4782 S23: 0.0379 REMARK 3 S31: 3.4368 S32: -1.6878 S33: -0.0133 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9083 33.2434 42.9307 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.4767 REMARK 3 T33: 0.2961 T12: 0.0584 REMARK 3 T13: -0.0575 T23: -0.2108 REMARK 3 L TENSOR REMARK 3 L11: 11.4831 L22: 11.8618 REMARK 3 L33: 24.2335 L12: 5.2798 REMARK 3 L13: 9.1172 L23: 9.6649 REMARK 3 S TENSOR REMARK 3 S11: -0.1464 S12: 0.4886 S13: -0.6000 REMARK 3 S21: -1.3322 S22: 0.4247 S23: -0.2555 REMARK 3 S31: -0.3463 S32: 0.6486 S33: -0.2782 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 284 REMARK 3 RESIDUE RANGE : A 285 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3274 15.8454 2.7508 REMARK 3 T TENSOR REMARK 3 T11: 0.0420 T22: 0.0456 REMARK 3 T33: 0.0938 T12: 0.0070 REMARK 3 T13: 0.0443 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.7154 L22: 1.5897 REMARK 3 L33: 1.0135 L12: -0.5931 REMARK 3 L13: 0.7452 L23: -1.1653 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.0778 S13: 0.0491 REMARK 3 S21: 0.0822 S22: -0.0497 S23: 0.0088 REMARK 3 S31: -0.0594 S32: -0.0031 S33: 0.0368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3QOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25553 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 2R5S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.2 M CALCIUM ACETATE, REMARK 280 0.1 M MES, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.22350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 382 O HOH A 400 1.94 REMARK 500 O HOH A 474 O HOH A 485 1.99 REMARK 500 O HOH A 395 O HOH A 410 2.00 REMARK 500 O HOH A 328 O HOH A 393 2.15 REMARK 500 O HOH A 357 O HOH A 392 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 502 O HOH A 503 2545 1.71 REMARK 500 O HOH A 430 O HOH A 437 2655 1.82 REMARK 500 O HOH A 501 O HOH A 504 2545 1.86 REMARK 500 O HOH A 331 O HOH A 503 2545 1.94 REMARK 500 O HOH A 415 O HOH A 430 2645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 4 8.64 56.45 REMARK 500 ASN A 10 -159.09 -139.13 REMARK 500 ASN A 53 70.39 45.42 REMARK 500 GLU A 66 73.52 -119.67 REMARK 500 ASN A 86 26.16 47.46 REMARK 500 PHE A 93 157.85 174.91 REMARK 500 ARG A 163 57.32 -117.32 REMARK 500 ASP A 180 -153.25 -102.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 285 DBREF 3QOU A 1 284 UNP P77395 YBBN_ECOLI 1 284 SEQADV 3QOU GLY A -2 UNP P77395 EXPRESSION TAG SEQADV 3QOU SER A -1 UNP P77395 EXPRESSION TAG SEQADV 3QOU HIS A 0 UNP P77395 EXPRESSION TAG SEQRES 1 A 287 GLY SER HIS MET SER VAL GLU ASN ILE VAL ASN ILE ASN SEQRES 2 A 287 GLU SER ASN LEU GLN GLN VAL LEU GLU GLN SER MET THR SEQRES 3 A 287 THR PRO VAL LEU PHE TYR PHE TRP SER GLU ARG SER GLN SEQRES 4 A 287 HIS CYS LEU GLN LEU THR PRO ILE LEU GLU SER LEU ALA SEQRES 5 A 287 ALA GLN TYR ASN GLY GLN PHE ILE LEU ALA LYS LEU ASP SEQRES 6 A 287 CYS ASP ALA GLU GLN MET ILE ALA ALA GLN PHE GLY LEU SEQRES 7 A 287 ARG ALA ILE PRO THR VAL TYR LEU PHE GLN ASN GLY GLN SEQRES 8 A 287 PRO VAL ASP GLY PHE GLN GLY PRO GLN PRO GLU GLU ALA SEQRES 9 A 287 ILE ARG ALA LEU LEU ASP MLY VAL LEU PRO ARG GLU GLU SEQRES 10 A 287 GLU LEU MLY ALA GLN GLN ALA MET GLN LEU MET GLN GLU SEQRES 11 A 287 SER ASN TYR THR ASP ALA LEU PRO LEU LEU MLY ASP ALA SEQRES 12 A 287 TRP GLN LEU SER ASN GLN ASN GLY GLU ILE GLY LEU LEU SEQRES 13 A 287 LEU ALA GLU THR LEU ILE ALA LEU ASN ARG SER GLU ASP SEQRES 14 A 287 ALA GLU ALA VAL LEU MLY THR ILE PRO LEU GLN ASP GLN SEQRES 15 A 287 ASP THR ARG TYR GLN GLY LEU VAL ALA GLN ILE GLU LEU SEQRES 16 A 287 LEU MLY GLN ALA ALA ASP THR PRO GLU ILE GLN GLN LEU SEQRES 17 A 287 GLN GLN GLN VAL ALA GLU ASN PRO GLU ASP ALA ALA LEU SEQRES 18 A 287 ALA THR GLN LEU ALA LEU GLN LEU HIS GLN VAL GLY ARG SEQRES 19 A 287 ASN GLU GLU ALA LEU GLU LEU LEU PHE GLY HIS LEU ARG SEQRES 20 A 287 MLY ASP LEU THR ALA ALA ASP GLY GLN THR ARG MLY THR SEQRES 21 A 287 PHE GLN GLU ILE LEU ALA ALA LEU GLY THR GLY ASP ALA SEQRES 22 A 287 LEU ALA SER MLY TYR ARG ARG GLN LEU TYR ALA LEU LEU SEQRES 23 A 287 TYR MODRES 3QOU MLY A 108 LYS N-DIMETHYL-LYSINE MODRES 3QOU MLY A 117 LYS N-DIMETHYL-LYSINE MODRES 3QOU MLY A 138 LYS N-DIMETHYL-LYSINE MODRES 3QOU MLY A 172 LYS N-DIMETHYL-LYSINE MODRES 3QOU MLY A 194 LYS N-DIMETHYL-LYSINE MODRES 3QOU MLY A 245 LYS N-DIMETHYL-LYSINE MODRES 3QOU MLY A 256 LYS N-DIMETHYL-LYSINE MODRES 3QOU MLY A 274 LYS N-DIMETHYL-LYSINE HET MLY A 108 11 HET MLY A 117 11 HET MLY A 138 11 HET MLY A 172 11 HET MLY A 194 11 HET MLY A 245 11 HET MLY A 256 11 HET MLY A 274 11 HET CA A 285 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM CA CALCIUM ION FORMUL 1 MLY 8(C8 H18 N2 O2) FORMUL 2 CA CA 2+ FORMUL 3 HOH *227(H2 O) HELIX 1 1 ASN A 13 GLU A 19 1 7 HELIX 2 2 LEU A 41 ASN A 53 1 13 HELIX 3 3 GLU A 66 GLN A 72 1 7 HELIX 4 4 PRO A 98 LEU A 110 1 13 HELIX 5 5 ARG A 112 GLU A 127 1 16 HELIX 6 6 ASN A 129 SER A 144 1 16 HELIX 7 7 ASN A 147 LEU A 161 1 15 HELIX 8 8 ARG A 163 MLY A 172 1 10 HELIX 9 9 THR A 173 ILE A 174 5 2 HELIX 10 10 PRO A 175 GLN A 179 5 5 HELIX 11 11 ASP A 180 ALA A 197 1 18 HELIX 12 12 THR A 199 ASN A 212 1 14 HELIX 13 13 ASP A 215 VAL A 229 1 15 HELIX 14 14 ARG A 231 ASP A 246 1 16 HELIX 15 15 THR A 248 ASP A 251 5 4 HELIX 16 16 GLY A 252 GLY A 266 1 15 HELIX 17 17 ASP A 269 TYR A 284 1 16 SHEET 1 A 5 ILE A 6 ASN A 8 0 SHEET 2 A 5 ILE A 57 ASP A 62 1 O LYS A 60 N VAL A 7 SHEET 3 A 5 VAL A 26 TRP A 31 1 N LEU A 27 O ILE A 57 SHEET 4 A 5 THR A 80 GLN A 85 -1 O PHE A 84 N VAL A 26 SHEET 5 A 5 GLN A 88 GLN A 94 -1 O ASP A 91 N LEU A 83 LINK C ASP A 107 N MLY A 108 1555 1555 1.33 LINK C MLY A 108 N VAL A 109 1555 1555 1.33 LINK C LEU A 116 N MLY A 117 1555 1555 1.33 LINK C MLY A 117 N ALA A 118 1555 1555 1.33 LINK C LEU A 137 N MLY A 138 1555 1555 1.33 LINK C MLY A 138 N AASP A 139 1555 1555 1.33 LINK C MLY A 138 N BASP A 139 1555 1555 1.33 LINK C LEU A 171 N MLY A 172 1555 1555 1.34 LINK C MLY A 172 N THR A 173 1555 1555 1.34 LINK C LEU A 193 N MLY A 194 1555 1555 1.34 LINK C MLY A 194 N GLN A 195 1555 1555 1.33 LINK C ARG A 244 N MLY A 245 1555 1555 1.33 LINK C MLY A 245 N ASP A 246 1555 1555 1.33 LINK C ARG A 255 N MLY A 256 1555 1555 1.33 LINK C MLY A 256 N THR A 257 1555 1555 1.33 LINK C SER A 273 N MLY A 274 1555 1555 1.33 LINK C MLY A 274 N TYR A 275 1555 1555 1.33 CISPEP 1 ILE A 78 PRO A 79 0 1.61 SITE 1 AC1 4 ALA A 281 TYR A 284 HOH A 420 HOH A 421 CRYST1 29.523 62.447 79.981 90.00 96.57 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033872 0.000000 0.003900 0.00000 SCALE2 0.000000 0.016014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012586 0.00000