HEADER    HYDROLASE                               11-FEB-11   3QPD              
TITLE     STRUCTURE OF ASPERGILLUS ORYZAE CUTINASE EXPRESSED IN PICHIA PASTORIS,
TITLE    2 CRYSTALLIZED IN THE PRESENCE OF PARAOXON                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CUTINASE 1;                                                
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 26-212;                                       
COMPND   5 SYNONYM: CUTIN HYDROLASE 1, L1;                                      
COMPND   6 EC: 3.1.1.74;                                                        
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE;                             
SOURCE   3 ORGANISM_TAXID: 5062;                                                
SOURCE   4 GENE: CUTL, AO090005000029;                                          
SOURCE   5 EXPRESSION_SYSTEM: PICHIA PASTORIS;                                  
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 4922                                        
KEYWDS    ALPHA-BETA HYDROLASE FOLD, ESTERASE, HYDROLASE, CUTIN, MONO-ETHYL     
KEYWDS   2 PHOSPHORYLATED SERINE RESIDUE, SECRETED, PHOSPHORYLATED SERINE       
KEYWDS   3 RESIDUE                                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.LU,Y.GOSSER,J.K.MONTCLARE,Z.LIU,X.KONG                              
REVDAT   3   06-NOV-24 3QPD    1       LINK                                     
REVDAT   2   14-MAR-12 3QPD    1       AUTHOR                                   
REVDAT   1   29-FEB-12 3QPD    0                                                
JRNL        AUTH   A.LU,Y.GOSSER,J.K.MONTCLARE,Z.LIU,X.KONG                     
JRNL        TITL   STRUCTURE OF ASPERGILLUS ORYZAE CUTINASE EXPRESSED IN PICHIA 
JRNL        TITL 2 PASTORIS, CRYSTALLIZED IN THE PRESENCE OF PARAOXON           
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.57 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.6.1_357)                    
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 37.90                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.230                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 26363                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.161                           
REMARK   3   R VALUE            (WORKING SET) : 0.160                           
REMARK   3   FREE R VALUE                     : 0.184                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.050                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1345                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 37.9060 -  3.3834    0.94     2613   140  0.1580 0.1715        
REMARK   3     2  3.3834 -  2.6857    1.00     2606   136  0.1686 0.1961        
REMARK   3     3  2.6857 -  2.3463    1.00     2556   133  0.1564 0.1762        
REMARK   3     4  2.3463 -  2.1318    1.00     2518   145  0.1466 0.1666        
REMARK   3     5  2.1318 -  1.9790    1.00     2537   144  0.1514 0.1807        
REMARK   3     6  1.9790 -  1.8623    1.00     2517   139  0.1472 0.1777        
REMARK   3     7  1.8623 -  1.7690    0.99     2521   110  0.1450 0.2093        
REMARK   3     8  1.7690 -  1.6920    0.99     2484   140  0.1410 0.1747        
REMARK   3     9  1.6920 -  1.6269    0.99     2478   128  0.1355 0.1802        
REMARK   3    10  1.6269 -  1.5708    0.98     2471   130  0.1386 0.1582        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.36                                          
REMARK   3   B_SOL              : 41.67                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.160            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.330           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.74010                                              
REMARK   3    B22 (A**2) : 0.74010                                              
REMARK   3    B33 (A**2) : -1.99020                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.014           1418                                  
REMARK   3   ANGLE     :  1.570           1929                                  
REMARK   3   CHIRALITY :  0.099            222                                  
REMARK   3   PLANARITY :  0.009            257                                  
REMARK   3   DIHEDRAL  : 14.261            529                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3QPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-11.                  
REMARK 100 THE DEPOSITION ID IS D_1000063934.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 05-FEB-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X6A                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.77009                            
REMARK 200  MONOCHROMATOR                  : SI(111)                            
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 270                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 26363                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.570                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 37.900                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.9                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.63                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 47.83                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG2KMME, 0.1M POTASSIUM             
REMARK 280  THIOCYANATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE     
REMARK 280  298K                                                                
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+2/3                                            
REMARK 290       3555   -X+Y,-X,Z+1/3                                           
REMARK 290       4555   Y,X,-Z                                                  
REMARK 290       5555   X-Y,-Y,-Z+1/3                                           
REMARK 290       6555   -X,-X+Y,-Z+2/3                                          
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000      105.14067            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       52.57033            
REMARK 290   SMTRY1   4 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   5  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       52.57033            
REMARK 290   SMTRY1   6 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000      105.14067            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A 409  LIES ON A SPECIAL POSITION.                          
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    THR A  49      -13.13     77.36                                   
REMARK 500    SER A  57     -100.88   -132.94                                   
REMARK 500    SEP A 126     -122.85     56.23                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3QPC   RELATED DB: PDB                                   
REMARK 900 HIGH RESOLUTION STRUCTURE OF FSC CUTIANSE IN THE PRESENCE OF PAROXON 
REMARK 900 RELATED ID: 3GBS   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF ASPERGILLUS ORYZAE CUTINASE                     
REMARK 900 RELATED ID: 3QPA   RELATED DB: PDB                                   
DBREF  3QPD A   26   212  UNP    P52956   CUTI1_ASPOR     26    212             
SEQRES   1 A  187  LEU THR GLY GLY ASP GLU LEU ARG ASP GLY PRO CYS LYS          
SEQRES   2 A  187  PRO ILE THR PHE ILE PHE ALA ARG ALA SER THR GLU PRO          
SEQRES   3 A  187  GLY LEU LEU GLY ILE SER THR GLY PRO ALA VAL CYS ASN          
SEQRES   4 A  187  ARG LEU LYS LEU ALA ARG SER GLY ASP VAL ALA CYS GLN          
SEQRES   5 A  187  GLY VAL GLY PRO ARG TYR THR ALA ASP LEU PRO SER ASN          
SEQRES   6 A  187  ALA LEU PRO GLU GLY THR SER GLN ALA ALA ILE ALA GLU          
SEQRES   7 A  187  ALA GLN GLY LEU PHE GLU GLN ALA VAL SER LYS CYS PRO          
SEQRES   8 A  187  ASP THR GLN ILE VAL ALA GLY GLY TYR SEP GLN GLY THR          
SEQRES   9 A  187  ALA VAL MET ASN GLY ALA ILE LYS ARG LEU SER ALA ASP          
SEQRES  10 A  187  VAL GLN ASP LYS ILE LYS GLY VAL VAL LEU PHE GLY TYR          
SEQRES  11 A  187  THR ARG ASN ALA GLN GLU ARG GLY GLN ILE ALA ASN PHE          
SEQRES  12 A  187  PRO LYS ASP LYS VAL LYS VAL TYR CYS ALA VAL GLY ASP          
SEQRES  13 A  187  LEU VAL CYS LEU GLY THR LEU ILE VAL ALA PRO PRO HIS          
SEQRES  14 A  187  PHE SER TYR LEU SER ASP THR GLY ASP ALA SER ASP PHE          
SEQRES  15 A  187  LEU LEU SER GLN LEU                                          
MODRES 3QPD SEP A  126  SER  PHOSPHOSERINE                                      
HET    SEP  A 126      10                                                       
HETNAM     SEP PHOSPHOSERINE                                                    
HETSYN     SEP PHOSPHONOSERINE                                                  
FORMUL   1  SEP    C3 H8 N O6 P                                                 
FORMUL   2  HOH   *237(H2 O)                                                    
HELIX    1   1 ASP A   30  GLY A   35  1                                   6    
HELIX    2   2 SER A   57  ARG A   70  1                                  14    
HELIX    3   3 ASP A   86  LEU A   92  5                                   7    
HELIX    4   4 SER A   97  CYS A  115  1                                  19    
HELIX    5   5 SEP A  126  LYS A  137  1                                  12    
HELIX    6   6 SER A  140  LYS A  146  1                                   7    
HELIX    7   7 PRO A  169  ASP A  171  5                                   3    
HELIX    8   8 ASP A  181  GLY A  186  5                                   6    
HELIX    9   9 ALA A  191  SER A  199  5                                   9    
HELIX   10  10 ASP A  200  LEU A  212  1                                  13    
SHEET    1   A 5 VAL A  74  GLY A  78  0                                        
SHEET    2   A 5 ILE A  40  ALA A  45  1  N  PHE A  42   O  ALA A  75           
SHEET    3   A 5 GLN A 119  TYR A 125  1  O  VAL A 121   N  THR A  41           
SHEET    4   A 5 ILE A 147  PHE A 153  1  O  LYS A 148   N  ILE A 120           
SHEET    5   A 5 VAL A 173  TYR A 176  1  O  TYR A 176   N  LEU A 152           
SSBOND   1 CYS A   37    CYS A  115                          1555   1555  2.06  
SSBOND   2 CYS A   63    CYS A   76                          1555   1555  2.08  
SSBOND   3 CYS A  177    CYS A  184                          1555   1555  2.06  
LINK         C   TYR A 125                 N   SEP A 126     1555   1555  1.33  
LINK         C   SEP A 126                 N   GLN A 127     1555   1555  1.34  
CISPEP   1 GLY A   35    PRO A   36          0         2.03                     
CISPEP   2 GLY A   80    PRO A   81          0         7.08                     
CRYST1   45.078   45.078  157.711  90.00  90.00 120.00 P 32 2 1      6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.022184  0.012808  0.000000        0.00000                         
SCALE2      0.000000  0.025616  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.006341        0.00000