HEADER TRANSFERASE 13-FEB-11 3QPG TITLE CRYSTAL STRUCTURES OF ESCHERICHIA COLI ASPARTATE AMINOTRANSFERASE TITLE 2 RECONSTITUTED WITH 1-DEAZA-PYRIDOXAL 5'-PHOSPHATE: INTERNAL ALDIMINE TITLE 3 AND STABLE L-ASPARTATE EXTERNAL ALDIMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE TRANSAMINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: MG204 KEYWDS AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.R.GRISWOLD REVDAT 3 21-FEB-24 3QPG 1 REMARK REVDAT 2 20-JUL-11 3QPG 1 JRNL REVDAT 1 15-JUN-11 3QPG 0 JRNL AUTH W.R.GRISWOLD,A.J.FISHER,M.D.TONEY JRNL TITL CRYSTAL STRUCTURES OF ASPARTATE AMINOTRANSFERASE JRNL TITL 2 RECONSTITUTED WITH 1-DEAZAPYRIDOXAL 5'-PHOSPHATE: INTERNAL JRNL TITL 3 ALDIMINE AND STABLE L-ASPARTATE EXTERNAL ALDIMINE. JRNL REF BIOCHEMISTRY V. 50 5918 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21627105 JRNL DOI 10.1021/BI200436Y REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 46680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5091 - 3.8559 0.96 4586 231 0.1430 0.1549 REMARK 3 2 3.8559 - 3.0617 0.99 4556 231 0.1432 0.1654 REMARK 3 3 3.0617 - 2.6750 0.99 4511 232 0.1484 0.1859 REMARK 3 4 2.6750 - 2.4306 0.99 4463 277 0.1506 0.1982 REMARK 3 5 2.4306 - 2.2564 0.99 4459 229 0.1441 0.1922 REMARK 3 6 2.2564 - 2.1235 0.98 4475 224 0.1444 0.1909 REMARK 3 7 2.1235 - 2.0171 0.98 4426 248 0.1448 0.1783 REMARK 3 8 2.0171 - 1.9294 0.98 4399 251 0.1654 0.2353 REMARK 3 9 1.9294 - 1.8551 0.98 4409 236 0.1801 0.2244 REMARK 3 10 1.8551 - 1.7911 0.90 4028 209 0.1983 0.2540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 50.66 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.22940 REMARK 3 B22 (A**2) : -4.88430 REMARK 3 B33 (A**2) : 1.65490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3390 REMARK 3 ANGLE : 1.518 4616 REMARK 3 CHIRALITY : 0.114 494 REMARK 3 PLANARITY : 0.008 613 REMARK 3 DIHEDRAL : 13.470 1260 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 13:54) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6223 21.6407 -11.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.2860 T22: 0.3844 REMARK 3 T33: 0.3424 T12: 0.0125 REMARK 3 T13: -0.0595 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.0466 L22: 0.0382 REMARK 3 L33: 0.0483 L12: 0.0428 REMARK 3 L13: 0.0476 L23: 0.0315 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: 0.1568 S13: -0.0719 REMARK 3 S21: -0.1157 S22: 0.0325 S23: -0.0745 REMARK 3 S31: 0.1858 S32: 0.2411 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 55:330) REMARK 3 ORIGIN FOR THE GROUP (A): -46.2518 25.3144 -3.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.1820 T22: 0.2167 REMARK 3 T33: 0.1901 T12: 0.0171 REMARK 3 T13: 0.0129 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.7932 L22: 0.5844 REMARK 3 L33: 0.9105 L12: -0.0335 REMARK 3 L13: 0.1740 L23: -0.0138 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.1896 S13: 0.0214 REMARK 3 S21: 0.0787 S22: 0.0028 S23: 0.0402 REMARK 3 S31: -0.0040 S32: -0.1120 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 331:408) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2462 20.0454 6.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.3184 T22: 0.3616 REMARK 3 T33: 0.3509 T12: -0.0077 REMARK 3 T13: -0.0770 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.2406 L22: 0.0622 REMARK 3 L33: 0.3715 L12: 0.0770 REMARK 3 L13: 0.0839 L23: 0.1438 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.2880 S13: -0.0887 REMARK 3 S21: 0.2444 S22: 0.1043 S23: -0.2928 REMARK 3 S31: 0.1294 S32: 0.1259 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46701 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 28.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 UL OF PROTEIN SOLUTION(15-20 MG/ML, REMARK 280 50 MM TEA, PH 7.5, 100 MM KCL, 2 MM DTT, 10 MM DEAZA-PLP, 50 MM REMARK 280 L-ASPARTATE) MIXED WITH 2 UL RESERVOIR BUFFER (53-60% SATURATED REMARK 280 AMMONIUM SULFATE AND 50 MM TEA, PH 7.5), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.89950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.89950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.89250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.41700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.89250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.41700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.89950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.89250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.41700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.89950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.89250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.41700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -83.78500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -38.89950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 ASN A 347 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 238 O HOH A 653 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 25 -61.57 -104.99 REMARK 500 TYR A 161 -46.32 -150.17 REMARK 500 ARG A 266 74.20 56.70 REMARK 500 ASN A 294 -76.47 -112.37 REMARK 500 SER A 296 -61.85 79.58 REMARK 500 ASN A 347 -49.43 76.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3QP A 422 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QN6 RELATED DB: PDB REMARK 900 SAME PROTEIN IN THE INTERNAL ALDIMINE (DEAZA-PLP) DBREF 3QPG A 13 408 UNP C9QZE8 C9QZE8_ECOD1 1 396 SEQRES 1 A 396 MET PHE GLU ASN ILE THR ALA ALA PRO ALA ASP PRO ILE SEQRES 2 A 396 LEU GLY LEU ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO SEQRES 3 A 396 GLY LYS ILE ASN LEU GLY ILE GLY VAL TYR LYS ASP GLU SEQRES 4 A 396 THR GLY LYS THR PRO VAL LEU THR SER VAL LYS LYS ALA SEQRES 5 A 396 GLU GLN TYR LEU LEU GLU ASN GLU THR THR LYS ASN TYR SEQRES 6 A 396 LEU GLY ILE ASP GLY ILE PRO GLU PHE GLY ARG CYS THR SEQRES 7 A 396 GLN GLU LEU LEU PHE GLY LYS GLY SER ALA LEU ILE ASN SEQRES 8 A 396 ASP LYS ARG ALA ARG THR ALA GLN THR PRO GLY GLY THR SEQRES 9 A 396 GLY ALA LEU ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN SEQRES 10 A 396 THR SER VAL LYS ARG VAL TRP VAL SER ASN PRO SER TRP SEQRES 11 A 396 PRO ASN HIS LYS SER VAL PHE ASN SER ALA GLY LEU GLU SEQRES 12 A 396 VAL ARG GLU TYR ALA TYR TYR ASP ALA GLU ASN HIS THR SEQRES 13 A 396 LEU ASP PHE ASP ALA LEU ILE ASN SER LEU ASN GLU ALA SEQRES 14 A 396 GLN ALA GLY ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS SEQRES 15 A 396 ASN PRO THR GLY ILE ASP PRO THR LEU GLU GLN TRP GLN SEQRES 16 A 396 THR LEU ALA GLN LEU SER VAL GLU LYS GLY TRP LEU PRO SEQRES 17 A 396 LEU PHE ASP PHE ALA TYR GLN GLY PHE ALA ARG GLY LEU SEQRES 18 A 396 GLU GLU ASP ALA GLU GLY LEU ARG ALA PHE ALA ALA MET SEQRES 19 A 396 HIS LYS GLU LEU ILE VAL ALA SER SER TYR SER LYS ASN SEQRES 20 A 396 PHE GLY LEU TYR ASN GLU ARG VAL GLY ALA CYS THR LEU SEQRES 21 A 396 VAL ALA ALA ASP SER GLU THR VAL ASP ARG ALA PHE SER SEQRES 22 A 396 GLN MET LYS ALA ALA ILE ARG ALA ASN TYR SER ASN PRO SEQRES 23 A 396 PRO ALA HIS GLY ALA SER VAL VAL ALA THR ILE LEU SER SEQRES 24 A 396 ASN ASP ALA LEU ARG ALA ILE TRP GLU GLN GLU LEU THR SEQRES 25 A 396 ASP MET ARG GLN ARG ILE GLN ARG MET ARG GLN LEU PHE SEQRES 26 A 396 VAL ASN THR LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SEQRES 27 A 396 SER PHE ILE ILE LYS GLN ASN GLY MET PHE SER PHE SER SEQRES 28 A 396 GLY LEU THR LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU SEQRES 29 A 396 PHE GLY VAL TYR ALA VAL ALA SER GLY ARG VAL ASN VAL SEQRES 30 A 396 ALA GLY MET THR PRO ASP ASN MET ALA PRO LEU CYS GLU SEQRES 31 A 396 ALA ILE VAL ALA VAL LEU HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET SO4 A 413 5 HET SO4 A 414 5 HET SO4 A 415 5 HET SO4 A 416 5 HET EDO A 417 4 HET EDO A 418 4 HET EDO A 419 4 HET EDO A 420 4 HET CL A 421 1 HET 3QP A 422 24 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM 3QP (E)-N-{2-HYDROXY-3-METHYL-6-[(PHOSPHONOOXY) HETNAM 2 3QP METHYL]BENZYLIDENE}-L-ASPARTIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 8(O4 S 2-) FORMUL 10 EDO 4(C2 H6 O2) FORMUL 14 CL CL 1- FORMUL 15 3QP C13 H16 N O9 P FORMUL 16 HOH *323(H2 O) HELIX 1 1 LEU A 26 ASP A 35 1 10 HELIX 2 2 LEU A 58 GLU A 72 1 15 HELIX 3 3 ILE A 83 GLY A 96 1 14 HELIX 4 4 SER A 99 ASP A 104 1 6 HELIX 5 5 PRO A 113 THR A 130 1 18 HELIX 6 6 PRO A 143 ALA A 152 1 10 HELIX 7 7 ASP A 170 ASN A 179 1 10 HELIX 8 8 THR A 202 GLY A 217 1 16 HELIX 9 9 GLY A 232 ALA A 237 1 6 HELIX 10 10 ALA A 237 HIS A 247 1 11 HELIX 11 11 LEU A 262 ARG A 266 5 5 HELIX 12 12 ASP A 276 ALA A 293 1 18 HELIX 13 13 PRO A 299 SER A 311 1 13 HELIX 14 14 ASN A 312 LYS A 344 1 33 HELIX 15 15 PHE A 350 GLN A 356 5 7 HELIX 16 16 THR A 366 GLY A 378 1 13 HELIX 17 17 ALA A 390 MET A 392 5 3 HELIX 18 18 THR A 393 LEU A 408 1 16 SHEET 1 A 2 ILE A 41 ASN A 42 0 SHEET 2 A 2 VAL A 379 TYR A 380 1 O TYR A 380 N ILE A 41 SHEET 1 B 7 ALA A 107 THR A 112 0 SHEET 2 B 7 GLY A 268 VAL A 273 -1 O LEU A 272 N ARG A 108 SHEET 3 B 7 LEU A 250 SER A 255 -1 N VAL A 252 O THR A 271 SHEET 4 B 7 LEU A 219 PHE A 224 1 N PHE A 222 O ALA A 253 SHEET 5 B 7 VAL A 186 HIS A 190 1 N PHE A 189 O LEU A 221 SHEET 6 B 7 ARG A 134 ASN A 139 1 N TRP A 136 O LEU A 188 SHEET 7 B 7 GLU A 155 ALA A 160 1 O TYR A 159 N ASN A 139 SHEET 1 C 2 TYR A 162 ASP A 163 0 SHEET 2 C 2 THR A 168 LEU A 169 -1 O THR A 168 N ASP A 163 SHEET 1 D 2 PHE A 360 PHE A 362 0 SHEET 2 D 2 ARG A 386 ASN A 388 -1 O VAL A 387 N SER A 361 CISPEP 1 ASN A 139 PRO A 140 0 -0.24 CISPEP 2 ASN A 195 PRO A 196 0 20.15 SITE 1 AC1 5 ARG A 327 GLN A 328 HOH A 699 HOH A 720 SITE 2 AC1 5 HOH A 732 SITE 1 AC2 4 LYS A 133 ARG A 134 ARG A 372 ALA A 406 SITE 1 AC3 6 LYS A 146 ASN A 150 GLU A 155 VAL A 156 SITE 2 AC3 6 ARG A 157 HOH A 726 SITE 1 AC4 5 ALA A 127 VAL A 132 GLY A 153 LEU A 154 SITE 2 AC4 5 HOH A 568 SITE 1 AC5 2 ARG A 348 ASP A 349 SITE 1 AC6 5 LYS A 49 THR A 55 THR A 74 ASN A 76 SITE 2 AC6 5 HOH A 662 SITE 1 AC7 4 PRO A 84 ARG A 88 HOH A 577 HOH A 690 SITE 1 AC8 7 GLY A 232 LEU A 233 GLU A 234 GLU A 235 SITE 2 AC8 7 HOH A 473 HOH A 618 HOH A 723 SITE 1 AC9 9 PRO A 84 GLY A 87 ARG A 88 GLN A 91 SITE 2 AC9 9 ARG A 108 THR A 109 HOH A 489 HOH A 495 SITE 3 AC9 9 HOH A 692 SITE 1 BC1 7 HOH A 6 THR A 90 LEU A 94 GLN A 227 SITE 2 BC1 7 SER A 254 TYR A 256 ASN A 259 SITE 1 BC2 12 PRO A 196 THR A 197 GLY A 198 ARG A 334 SITE 2 BC2 12 GLN A 356 ASN A 357 GLY A 358 MET A 359 SITE 3 BC2 12 PHE A 360 SER A 361 PHE A 362 HOH A 485 SITE 1 BC3 4 HIS A 247 LYS A 248 GLU A 249 LYS A 367 SITE 1 BC4 2 ARG A 108 HOH A 670 SITE 1 BC5 17 HOH A 11 ILE A 25 GLY A 46 TYR A 77 SITE 2 BC5 17 GLY A 114 GLY A 115 THR A 116 TRP A 142 SITE 3 BC5 17 ASN A 195 ASP A 223 TYR A 226 SER A 255 SITE 4 BC5 17 SER A 257 LYS A 258 ARG A 266 ARG A 292 SITE 5 BC5 17 ARG A 386 CRYST1 83.785 154.834 77.799 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012854 0.00000