HEADER MEMBRANE PROTEIN/PROTEIN TRANSPORT 14-FEB-11 3QQ2 TITLE CRYSTAL STRUCTURE OF THE BETA DOMAIN OF THE BORDETELLA AUTOTRANSPORTER TITLE 2 BRKA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRKA AUTOTRANSPORTER; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: BETA DOMAIN, UNP RESIDUES 727-1010; COMPND 5 SYNONYM: SERUM RESISTANCE PROTEIN BRKA, BRKA TRANSLOCATOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 GENE: BP3494, BRKA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS BETA BARREL, TRANSMEMBRANE, MEMBRANE PROTEIN-PROTEIN TRANSPORT KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAI,K.ZHANG,Y.HUO,F.SUN REVDAT 3 01-NOV-23 3QQ2 1 SEQADV REVDAT 2 27-APR-11 3QQ2 1 JRNL REVDAT 1 13-APR-11 3QQ2 0 JRNL AUTH Y.ZHAI,K.ZHANG,Y.HUO,Y.ZHU,Q.ZHOU,J.LU,I.BLACK,X.PANG, JRNL AUTH 2 A.W.ROSZAK,X.ZHANG,N.W.ISAACS,F.SUN JRNL TITL AUTOTRANSPORTER PASSENGER DOMAIN SECRETION REQUIRES A JRNL TITL 2 HYDROPHOBIC CAVITY AT THE EXTRACELLULAR ENTRANCE OF THE JRNL TITL 3 BETA-DOMAIN PORE JRNL REF BIOCHEM.J. V. 435 577 2011 JRNL REFN ISSN 0264-6021 JRNL PMID 21306302 JRNL DOI 10.1042/BJ20101548 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 28054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1507 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1474 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 97.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26000 REMARK 3 B22 (A**2) : -2.22000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.454 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.343 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.812 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5927 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8012 ; 1.588 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 738 ; 7.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 301 ;35.809 ;21.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;23.510 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 71 ;17.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 774 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4768 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3619 ; 0.471 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5629 ; 0.922 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2308 ; 1.319 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2383 ; 2.314 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 745 A 1010 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6630 -7.2937 29.0123 REMARK 3 T TENSOR REMARK 3 T11: 0.2399 T22: 0.1186 REMARK 3 T33: 0.1563 T12: -0.1290 REMARK 3 T13: -0.1043 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.8190 L22: 2.3669 REMARK 3 L33: 2.1766 L12: 0.1475 REMARK 3 L13: -0.1289 L23: -1.0365 REMARK 3 S TENSOR REMARK 3 S11: 0.1576 S12: 0.0726 S13: -0.0626 REMARK 3 S21: -0.2016 S22: -0.0958 S23: 0.0960 REMARK 3 S31: 0.4335 S32: -0.2959 S33: -0.0618 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 745 B 1010 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2690 -40.9964 41.6166 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.2787 REMARK 3 T33: 0.1760 T12: -0.1674 REMARK 3 T13: -0.0954 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 1.4092 L22: 3.7527 REMARK 3 L33: 2.0759 L12: -0.0694 REMARK 3 L13: -0.0486 L23: -0.7670 REMARK 3 S TENSOR REMARK 3 S11: -0.2155 S12: -0.2744 S13: 0.2063 REMARK 3 S21: 0.2250 S22: 0.0294 S23: -0.0774 REMARK 3 S31: -0.2966 S32: 0.2321 S33: 0.1861 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 745 C 1010 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9500 -68.4109 84.1491 REMARK 3 T TENSOR REMARK 3 T11: 0.4779 T22: 0.8908 REMARK 3 T33: 0.4800 T12: 0.0657 REMARK 3 T13: -0.1029 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 2.2183 L22: 0.7964 REMARK 3 L33: 4.4784 L12: 0.0738 REMARK 3 L13: 1.4967 L23: -0.4678 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.4042 S13: 0.0783 REMARK 3 S21: 0.0081 S22: 0.0630 S23: -0.0286 REMARK 3 S31: 0.2329 S32: 0.0536 S33: -0.0742 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07176 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29563 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.268 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2QOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TIS-HCL, 10MM SPERMIDINE, 200MM REMARK 280 LICL, 25% PEG 2000, PH8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 202.77450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 202.77450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.25500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.18600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.25500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.18600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 202.77450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.25500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.18600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 202.77450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.25500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.18600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 727 REMARK 465 ALA A 728 REMARK 465 GLU A 729 REMARK 465 SER A 730 REMARK 465 ASN A 731 REMARK 465 ALA A 732 REMARK 465 LEU A 733 REMARK 465 ASP A 734 REMARK 465 LYS A 735 REMARK 465 ARG A 736 REMARK 465 LEU A 737 REMARK 465 GLY A 738 REMARK 465 GLU A 739 REMARK 465 LEU A 740 REMARK 465 ARG A 741 REMARK 465 LEU A 742 REMARK 465 ARG A 743 REMARK 465 ALA A 744 REMARK 465 ARG A 763 REMARK 465 HIS A 764 REMARK 465 ALA A 765 REMARK 465 ARG A 766 REMARK 465 THR A 949 REMARK 465 GLY A 950 REMARK 465 ASP A 951 REMARK 465 VAL A 952 REMARK 465 ARG A 953 REMARK 465 THR A 954 REMARK 465 ASN A 955 REMARK 465 GLY A 956 REMARK 465 ILE A 957 REMARK 465 GLY A 958 REMARK 465 HIS A 959 REMARK 465 ALA A 960 REMARK 465 GLY A 961 REMARK 465 ALA A 962 REMARK 465 GLY A 963 REMARK 465 ARG A 964 REMARK 465 HIS A 965 REMARK 465 MET B 727 REMARK 465 ALA B 728 REMARK 465 GLU B 729 REMARK 465 SER B 730 REMARK 465 ASN B 731 REMARK 465 ALA B 732 REMARK 465 LEU B 733 REMARK 465 ASP B 734 REMARK 465 LYS B 735 REMARK 465 ARG B 736 REMARK 465 LEU B 737 REMARK 465 GLY B 738 REMARK 465 GLU B 739 REMARK 465 LEU B 740 REMARK 465 ARG B 741 REMARK 465 LEU B 742 REMARK 465 ARG B 743 REMARK 465 ALA B 744 REMARK 465 HIS B 764 REMARK 465 ALA B 765 REMARK 465 ARG B 766 REMARK 465 GLY B 950 REMARK 465 ASP B 951 REMARK 465 VAL B 952 REMARK 465 ARG B 953 REMARK 465 THR B 954 REMARK 465 ASN B 955 REMARK 465 GLY B 956 REMARK 465 ILE B 957 REMARK 465 GLY B 958 REMARK 465 HIS B 959 REMARK 465 ALA B 960 REMARK 465 GLY B 961 REMARK 465 ALA B 962 REMARK 465 MET C 727 REMARK 465 ALA C 728 REMARK 465 GLU C 729 REMARK 465 SER C 730 REMARK 465 ASN C 731 REMARK 465 ALA C 732 REMARK 465 LEU C 733 REMARK 465 ASP C 734 REMARK 465 LYS C 735 REMARK 465 ARG C 736 REMARK 465 LEU C 737 REMARK 465 GLY C 738 REMARK 465 GLU C 739 REMARK 465 LEU C 740 REMARK 465 ARG C 741 REMARK 465 LEU C 742 REMARK 465 ARG C 743 REMARK 465 ALA C 744 REMARK 465 ARG C 763 REMARK 465 HIS C 764 REMARK 465 ALA C 765 REMARK 465 ARG C 766 REMARK 465 GLY C 950 REMARK 465 ASP C 951 REMARK 465 VAL C 952 REMARK 465 ARG C 953 REMARK 465 THR C 954 REMARK 465 ASN C 955 REMARK 465 GLY C 956 REMARK 465 ILE C 957 REMARK 465 GLY C 958 REMARK 465 HIS C 959 REMARK 465 ALA C 960 REMARK 465 GLY C 961 REMARK 465 ALA C 962 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 816 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LEU B 816 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LEU C 832 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 806 -91.47 -53.71 REMARK 500 ASP A 808 -110.60 -46.51 REMARK 500 THR A 850 -16.19 56.60 REMARK 500 TYR A 898 -163.97 -126.14 REMARK 500 ARG A 899 112.02 -177.32 REMARK 500 ASN A 902 43.52 38.19 REMARK 500 ARG A 967 161.18 179.06 REMARK 500 LYS A 980 46.66 83.36 REMARK 500 ASP A 994 -85.27 -55.67 REMARK 500 ASN A 997 107.12 -160.46 REMARK 500 THR B 850 -145.14 31.33 REMARK 500 PRO B 877 140.96 -34.29 REMARK 500 ASN B 902 61.77 14.68 REMARK 500 ALA B 910 84.75 -57.42 REMARK 500 THR B 912 117.35 -162.57 REMARK 500 HIS B 965 -153.58 -140.77 REMARK 500 LYS B 980 62.13 72.51 REMARK 500 ASP B 994 -73.65 -52.50 REMARK 500 ALA C 746 78.55 61.62 REMARK 500 SER C 755 101.28 -168.02 REMARK 500 SER C 784 76.46 -151.95 REMARK 500 PRO C 806 101.43 -42.90 REMARK 500 ASP C 851 156.37 106.59 REMARK 500 ARG C 854 78.13 -159.16 REMARK 500 ASP C 879 16.26 85.49 REMARK 500 GLU C 883 80.38 -159.44 REMARK 500 SER C 901 -99.05 -31.70 REMARK 500 ASN C 902 62.36 -66.04 REMARK 500 ALA C 929 91.85 -65.83 REMARK 500 ARG C 967 103.12 177.89 REMARK 500 TYR C 990 100.95 -178.40 REMARK 500 ARG C 995 24.50 173.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 3QQ2 A 727 1010 UNP Q45340 BRKA_BORPE 727 1010 DBREF 3QQ2 B 727 1010 UNP Q45340 BRKA_BORPE 727 1010 DBREF 3QQ2 C 727 1010 UNP Q45340 BRKA_BORPE 727 1010 SEQADV 3QQ2 MET A 727 UNP Q45340 LEU 727 ENGINEERED MUTATION SEQADV 3QQ2 MET B 727 UNP Q45340 LEU 727 ENGINEERED MUTATION SEQADV 3QQ2 MET C 727 UNP Q45340 LEU 727 ENGINEERED MUTATION SEQRES 1 A 284 MET ALA GLU SER ASN ALA LEU ASP LYS ARG LEU GLY GLU SEQRES 2 A 284 LEU ARG LEU ARG ALA ASP ALA GLY GLY PRO TRP ALA ARG SEQRES 3 A 284 THR PHE SER GLU ARG GLN GLN ILE SER ASN ARG HIS ALA SEQRES 4 A 284 ARG ALA TYR ASP GLN THR VAL SER GLY LEU GLU ILE GLY SEQRES 5 A 284 LEU ASP ARG GLY TRP SER ALA SER GLY GLY ARG TRP TYR SEQRES 6 A 284 ALA GLY GLY LEU LEU GLY TYR THR TYR ALA ASP ARG THR SEQRES 7 A 284 TYR PRO GLY ASP GLY GLY GLY LYS VAL LYS GLY LEU HIS SEQRES 8 A 284 VAL GLY GLY TYR ALA ALA TYR VAL GLY ASP GLY GLY TYR SEQRES 9 A 284 TYR LEU ASP THR VAL LEU ARG LEU GLY ARG TYR ASP GLN SEQRES 10 A 284 GLN TYR ASN ILE ALA GLY THR ASP GLY GLY ARG VAL THR SEQRES 11 A 284 ALA ASP TYR ARG THR SER GLY ALA ALA TRP SER LEU GLU SEQRES 12 A 284 GLY GLY ARG ARG PHE GLU LEU PRO ASN ASP TRP PHE ALA SEQRES 13 A 284 GLU PRO GLN ALA GLU VAL MET LEU TRP ARG THR SER GLY SEQRES 14 A 284 LYS ARG TYR ARG ALA SER ASN GLY LEU ARG VAL LYS VAL SEQRES 15 A 284 ASP ALA ASN THR ALA THR LEU GLY ARG LEU GLY LEU ARG SEQRES 16 A 284 PHE GLY ARG ARG ILE ALA LEU ALA GLY GLY ASN ILE VAL SEQRES 17 A 284 GLN PRO TYR ALA ARG LEU GLY TRP THR GLN GLU PHE LYS SEQRES 18 A 284 SER THR GLY ASP VAL ARG THR ASN GLY ILE GLY HIS ALA SEQRES 19 A 284 GLY ALA GLY ARG HIS GLY ARG VAL GLU LEU GLY ALA GLY SEQRES 20 A 284 VAL ASP ALA ALA LEU GLY LYS GLY HIS ASN LEU TYR ALA SEQRES 21 A 284 SER TYR GLU TYR ALA ALA GLY ASP ARG ILE ASN ILE PRO SEQRES 22 A 284 TRP SER PHE HIS ALA GLY TYR ARG TYR SER PHE SEQRES 1 B 284 MET ALA GLU SER ASN ALA LEU ASP LYS ARG LEU GLY GLU SEQRES 2 B 284 LEU ARG LEU ARG ALA ASP ALA GLY GLY PRO TRP ALA ARG SEQRES 3 B 284 THR PHE SER GLU ARG GLN GLN ILE SER ASN ARG HIS ALA SEQRES 4 B 284 ARG ALA TYR ASP GLN THR VAL SER GLY LEU GLU ILE GLY SEQRES 5 B 284 LEU ASP ARG GLY TRP SER ALA SER GLY GLY ARG TRP TYR SEQRES 6 B 284 ALA GLY GLY LEU LEU GLY TYR THR TYR ALA ASP ARG THR SEQRES 7 B 284 TYR PRO GLY ASP GLY GLY GLY LYS VAL LYS GLY LEU HIS SEQRES 8 B 284 VAL GLY GLY TYR ALA ALA TYR VAL GLY ASP GLY GLY TYR SEQRES 9 B 284 TYR LEU ASP THR VAL LEU ARG LEU GLY ARG TYR ASP GLN SEQRES 10 B 284 GLN TYR ASN ILE ALA GLY THR ASP GLY GLY ARG VAL THR SEQRES 11 B 284 ALA ASP TYR ARG THR SER GLY ALA ALA TRP SER LEU GLU SEQRES 12 B 284 GLY GLY ARG ARG PHE GLU LEU PRO ASN ASP TRP PHE ALA SEQRES 13 B 284 GLU PRO GLN ALA GLU VAL MET LEU TRP ARG THR SER GLY SEQRES 14 B 284 LYS ARG TYR ARG ALA SER ASN GLY LEU ARG VAL LYS VAL SEQRES 15 B 284 ASP ALA ASN THR ALA THR LEU GLY ARG LEU GLY LEU ARG SEQRES 16 B 284 PHE GLY ARG ARG ILE ALA LEU ALA GLY GLY ASN ILE VAL SEQRES 17 B 284 GLN PRO TYR ALA ARG LEU GLY TRP THR GLN GLU PHE LYS SEQRES 18 B 284 SER THR GLY ASP VAL ARG THR ASN GLY ILE GLY HIS ALA SEQRES 19 B 284 GLY ALA GLY ARG HIS GLY ARG VAL GLU LEU GLY ALA GLY SEQRES 20 B 284 VAL ASP ALA ALA LEU GLY LYS GLY HIS ASN LEU TYR ALA SEQRES 21 B 284 SER TYR GLU TYR ALA ALA GLY ASP ARG ILE ASN ILE PRO SEQRES 22 B 284 TRP SER PHE HIS ALA GLY TYR ARG TYR SER PHE SEQRES 1 C 284 MET ALA GLU SER ASN ALA LEU ASP LYS ARG LEU GLY GLU SEQRES 2 C 284 LEU ARG LEU ARG ALA ASP ALA GLY GLY PRO TRP ALA ARG SEQRES 3 C 284 THR PHE SER GLU ARG GLN GLN ILE SER ASN ARG HIS ALA SEQRES 4 C 284 ARG ALA TYR ASP GLN THR VAL SER GLY LEU GLU ILE GLY SEQRES 5 C 284 LEU ASP ARG GLY TRP SER ALA SER GLY GLY ARG TRP TYR SEQRES 6 C 284 ALA GLY GLY LEU LEU GLY TYR THR TYR ALA ASP ARG THR SEQRES 7 C 284 TYR PRO GLY ASP GLY GLY GLY LYS VAL LYS GLY LEU HIS SEQRES 8 C 284 VAL GLY GLY TYR ALA ALA TYR VAL GLY ASP GLY GLY TYR SEQRES 9 C 284 TYR LEU ASP THR VAL LEU ARG LEU GLY ARG TYR ASP GLN SEQRES 10 C 284 GLN TYR ASN ILE ALA GLY THR ASP GLY GLY ARG VAL THR SEQRES 11 C 284 ALA ASP TYR ARG THR SER GLY ALA ALA TRP SER LEU GLU SEQRES 12 C 284 GLY GLY ARG ARG PHE GLU LEU PRO ASN ASP TRP PHE ALA SEQRES 13 C 284 GLU PRO GLN ALA GLU VAL MET LEU TRP ARG THR SER GLY SEQRES 14 C 284 LYS ARG TYR ARG ALA SER ASN GLY LEU ARG VAL LYS VAL SEQRES 15 C 284 ASP ALA ASN THR ALA THR LEU GLY ARG LEU GLY LEU ARG SEQRES 16 C 284 PHE GLY ARG ARG ILE ALA LEU ALA GLY GLY ASN ILE VAL SEQRES 17 C 284 GLN PRO TYR ALA ARG LEU GLY TRP THR GLN GLU PHE LYS SEQRES 18 C 284 SER THR GLY ASP VAL ARG THR ASN GLY ILE GLY HIS ALA SEQRES 19 C 284 GLY ALA GLY ARG HIS GLY ARG VAL GLU LEU GLY ALA GLY SEQRES 20 C 284 VAL ASP ALA ALA LEU GLY LYS GLY HIS ASN LEU TYR ALA SEQRES 21 C 284 SER TYR GLU TYR ALA ALA GLY ASP ARG ILE ASN ILE PRO SEQRES 22 C 284 TRP SER PHE HIS ALA GLY TYR ARG TYR SER PHE HELIX 1 1 LEU C 978 HIS C 982 5 5 CISPEP 1 PRO B 806 GLY B 807 0 -11.87 CRYST1 60.510 122.372 405.549 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002466 0.00000