HEADER IMMUNE SYSTEM 15-FEB-11 3QQ3 TITLE CRYSTAL STRUCTURE OF SWINE MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I TITLE 2 SLA-1 0401 AND IDENTIFICATION OF 2009 PANDEMIC SWINE-ORIGIN INFLUENZA TITLE 3 A H1N1 VIRUS CYTOTOXIC T LYMPHOCYTE EPITOPE PEPTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-296; COMPND 5 SYNONYM: SLA-1*0401-S-OIVNW9 HEAVY CHAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B, E; COMPND 10 SYNONYM: SLA-1*0401-S-OIVNW9 LIGHT CHAIN, LACTOLLIN; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 9-MER PEPTIDE FROM NEURAMINIDASE; COMPND 14 CHAIN: C, F; COMPND 15 SYNONYM: PEPTIDE OF SLA-1*0401-S-OIVNW9; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIGS; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: PD1, SLA-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 10 ORGANISM_COMMON: PIGS; SOURCE 11 ORGANISM_TAXID: 9823; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 18 ORGANISM_TAXID: 11320; SOURCE 19 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS SWINE MHC CLASS 1, SLA-1*0401, EPITOPE OF INFLUENZA VIRUS, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHANG,J.QI,F.GAO,X.PAN,R.CHEN,Q.LI,Z.CHEN,X.LI,C.XIA,G.F.GAO REVDAT 2 20-NOV-24 3QQ3 1 SEQADV REVDAT 1 28-DEC-11 3QQ3 0 JRNL AUTH N.ZHANG,J.QI,S.FENG,F.GAO,J.LIU,X.PAN,R.CHEN,Q.LI,Z.CHEN, JRNL AUTH 2 X.LI,C.XIA,G.F.GAO JRNL TITL CRYSTAL STRUCTURE OF SWINE MAJOR HISTOCOMPATIBILITY COMPLEX JRNL TITL 2 CLASS I SLA-1 0401 AND IDENTIFICATION OF 2009 PANDEMIC JRNL TITL 3 SWINE-ORIGIN INFLUENZA A H1N1 VIRUS CYTOTOXIC T LYMPHOCYTE JRNL TITL 4 EPITOPE PEPTIDES. JRNL REF J.VIROL. V. 85 11709 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21900158 JRNL DOI 10.1128/JVI.05040-11 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3141 - 5.3769 0.99 2555 164 0.1773 0.2316 REMARK 3 2 5.3769 - 4.2725 1.00 2537 128 0.1500 0.1817 REMARK 3 3 4.2725 - 3.7338 1.00 2476 137 0.1635 0.2149 REMARK 3 4 3.7338 - 3.3930 1.00 2496 128 0.1816 0.2632 REMARK 3 5 3.3930 - 3.1502 1.00 2459 136 0.2008 0.2539 REMARK 3 6 3.1502 - 2.9646 1.00 2490 142 0.2171 0.2993 REMARK 3 7 2.9646 - 2.8163 1.00 2469 122 0.2298 0.3234 REMARK 3 8 2.8163 - 2.6938 1.00 2417 134 0.2494 0.3542 REMARK 3 9 2.6938 - 2.5902 0.99 2462 122 0.2753 0.3471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 20.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34170 REMARK 3 B22 (A**2) : 0.16290 REMARK 3 B33 (A**2) : -0.50460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.30040 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6434 REMARK 3 ANGLE : 0.802 8738 REMARK 3 CHIRALITY : 0.056 884 REMARK 3 PLANARITY : 0.003 1156 REMARK 3 DIHEDRAL : 17.207 2328 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V POLYETHYLENE GLYCOL 3350, 0.1M REMARK 280 BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.82550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 1 REMARK 465 GLU E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG D 14 OD1 ASP D 19 1.91 REMARK 500 O ALA E 4 O HOH E 331 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 196 O HOH B 129 1565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 19 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG D 145 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -131.23 54.76 REMARK 500 TYR A 123 -66.99 -107.26 REMARK 500 THR A 178 -41.21 -131.53 REMARK 500 ASP A 196 1.44 59.24 REMARK 500 LEU A 197 71.45 53.60 REMARK 500 LYS A 243 141.24 -177.26 REMARK 500 HIS B 33 131.87 -170.20 REMARK 500 TRP B 61 -7.94 81.88 REMARK 500 VAL B 76 -38.53 -134.06 REMARK 500 ASP D 16 -36.47 -39.94 REMARK 500 ASP D 29 -130.76 62.73 REMARK 500 ASN D 42 70.55 55.50 REMARK 500 ARG D 114 106.65 -166.55 REMARK 500 TYR D 123 -69.32 -106.87 REMARK 500 THR D 178 -31.53 -130.60 REMARK 500 LEU D 197 74.71 46.49 REMARK 500 PRO D 251 -8.20 -58.35 REMARK 500 ARG D 273 145.95 -176.08 REMARK 500 ASN E 23 -168.50 -160.88 REMARK 500 HIS E 33 129.51 -173.84 REMARK 500 TRP E 61 -14.53 79.20 REMARK 500 VAL E 76 -51.01 -134.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP D 16 ARG D 17 -148.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 15 -15.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q94 RELATED DB: PDB REMARK 900 RELATED ID: 3QQ4 RELATED DB: PDB DBREF 3QQ3 A 1 275 UNP O19244 O19244_PIG 22 296 DBREF 3QQ3 B 3 100 UNP Q07717 B2MG_PIG 21 118 DBREF 3QQ3 C 1 9 UNP Q9WDF0 Q9WDF0_9INFA 430 438 DBREF 3QQ3 D 1 275 UNP O19244 O19244_PIG 22 296 DBREF 3QQ3 E 3 100 UNP Q07717 B2MG_PIG 21 118 DBREF 3QQ3 F 1 9 UNP Q9WDF0 Q9WDF0_9INFA 430 438 SEQADV 3QQ3 GLU B 1 UNP Q07717 EXPRESSION TAG SEQADV 3QQ3 PHE B 2 UNP Q07717 EXPRESSION TAG SEQADV 3QQ3 GLU E 1 UNP Q07717 EXPRESSION TAG SEQADV 3QQ3 PHE E 2 UNP Q07717 EXPRESSION TAG SEQRES 1 A 275 GLY PRO HIS SER LEU SER TYR PHE TYR THR ALA VAL SER SEQRES 2 A 275 ARG PRO ASP ARG GLY ASP SER ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP ASN TYR SEQRES 4 A 275 ALA PRO ASN PRO ARG MET GLU PRO ARG VAL PRO TRP ILE SEQRES 5 A 275 GLN GLN GLU GLY GLN GLU TYR TRP ASP ARG GLU THR ARG SEQRES 6 A 275 ASN VAL LYS GLU THR ALA GLN THR TYR GLY VAL GLY LEU SEQRES 7 A 275 ASN THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR LEU GLN SER MET TYR GLY CYS TYR LEU GLY SEQRES 9 A 275 PRO ASP GLY LEU LEU LEU HIS GLY TYR ARG GLN ASP ALA SEQRES 10 A 275 TYR ASP GLY ALA ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 275 LYS ARG LYS TRP GLU ALA ALA ASP GLU ALA GLU ARG ARG SEQRES 13 A 275 ARG SER TYR LEU GLN GLY LEU CYS VAL GLU SER LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU MET GLY LYS ASP THR LEU GLN ARG ALA SEQRES 15 A 275 GLU PRO PRO LYS THR HIS VAL THR ARG HIS PRO SER SER SEQRES 16 A 275 ASP LEU GLY VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 275 TYR PRO LYS GLU ILE SER LEU THR TRP GLN ARG GLU GLY SEQRES 18 A 275 GLN ASP GLN SER GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA LEU SEQRES 20 A 275 VAL VAL PRO PRO GLY GLU GLU GLN SER TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU GLN GLU PRO LEU THR LEU ARG SEQRES 22 A 275 TRP ASP SEQRES 1 B 100 GLU PHE VAL ALA ARG PRO PRO LYS VAL GLN VAL TYR SER SEQRES 2 B 100 ARG HIS PRO ALA GLU ASN GLY LYS PRO ASN TYR LEU ASN SEQRES 3 B 100 CYS TYR VAL SER GLY PHE HIS PRO PRO GLN ILE GLU ILE SEQRES 4 B 100 ASP LEU LEU LYS ASN GLY GLU LYS MET ASN ALA GLU GLN SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU VAL HIS THR GLU PHE THR PRO ASN ALA VAL ASP GLN SEQRES 7 B 100 TYR SER CYS ARG VAL LYS HIS VAL THR LEU ASP LYS PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP HIS SEQRES 1 C 9 ASN SER ASP THR VAL GLY TRP SER TRP SEQRES 1 D 275 GLY PRO HIS SER LEU SER TYR PHE TYR THR ALA VAL SER SEQRES 2 D 275 ARG PRO ASP ARG GLY ASP SER ARG PHE ILE ALA VAL GLY SEQRES 3 D 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP ASN TYR SEQRES 4 D 275 ALA PRO ASN PRO ARG MET GLU PRO ARG VAL PRO TRP ILE SEQRES 5 D 275 GLN GLN GLU GLY GLN GLU TYR TRP ASP ARG GLU THR ARG SEQRES 6 D 275 ASN VAL LYS GLU THR ALA GLN THR TYR GLY VAL GLY LEU SEQRES 7 D 275 ASN THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 D 275 SER HIS THR LEU GLN SER MET TYR GLY CYS TYR LEU GLY SEQRES 9 D 275 PRO ASP GLY LEU LEU LEU HIS GLY TYR ARG GLN ASP ALA SEQRES 10 D 275 TYR ASP GLY ALA ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 D 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 D 275 LYS ARG LYS TRP GLU ALA ALA ASP GLU ALA GLU ARG ARG SEQRES 13 D 275 ARG SER TYR LEU GLN GLY LEU CYS VAL GLU SER LEU ARG SEQRES 14 D 275 ARG TYR LEU GLU MET GLY LYS ASP THR LEU GLN ARG ALA SEQRES 15 D 275 GLU PRO PRO LYS THR HIS VAL THR ARG HIS PRO SER SER SEQRES 16 D 275 ASP LEU GLY VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 275 TYR PRO LYS GLU ILE SER LEU THR TRP GLN ARG GLU GLY SEQRES 18 D 275 GLN ASP GLN SER GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 D 275 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA LEU SEQRES 20 D 275 VAL VAL PRO PRO GLY GLU GLU GLN SER TYR THR CYS HIS SEQRES 21 D 275 VAL GLN HIS GLU GLY LEU GLN GLU PRO LEU THR LEU ARG SEQRES 22 D 275 TRP ASP SEQRES 1 E 100 GLU PHE VAL ALA ARG PRO PRO LYS VAL GLN VAL TYR SER SEQRES 2 E 100 ARG HIS PRO ALA GLU ASN GLY LYS PRO ASN TYR LEU ASN SEQRES 3 E 100 CYS TYR VAL SER GLY PHE HIS PRO PRO GLN ILE GLU ILE SEQRES 4 E 100 ASP LEU LEU LYS ASN GLY GLU LYS MET ASN ALA GLU GLN SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU VAL HIS THR GLU PHE THR PRO ASN ALA VAL ASP GLN SEQRES 7 E 100 TYR SER CYS ARG VAL LYS HIS VAL THR LEU ASP LYS PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP HIS SEQRES 1 F 9 ASN SER ASP THR VAL GLY TRP SER TRP FORMUL 7 HOH *343(H2 O) HELIX 1 1 VAL A 49 GLU A 55 5 7 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ASP A 151 1 15 HELIX 4 4 ASP A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 GLN A 180 1 6 HELIX 7 7 SER A 195 LEU A 197 5 3 HELIX 8 8 GLU A 253 GLN A 255 5 3 HELIX 9 9 VAL D 49 GLN D 53 5 5 HELIX 10 10 GLY D 56 TYR D 85 1 30 HELIX 11 11 ASP D 137 ALA D 150 1 14 HELIX 12 12 ASP D 151 GLY D 162 1 12 HELIX 13 13 GLY D 162 GLY D 175 1 14 HELIX 14 14 GLY D 175 GLN D 180 1 6 HELIX 15 15 SER D 225 MET D 228 5 4 HELIX 16 16 GLU D 253 GLN D 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 SER A 20 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 A 8 HIS A 3 SER A 13 -1 N SER A 6 O TYR A 27 SHEET 5 A 8 THR A 94 LEU A 103 -1 O TYR A 99 N TYR A 7 SHEET 6 A 8 LEU A 109 TYR A 118 -1 O HIS A 111 N TYR A 102 SHEET 7 A 8 ALA A 121 LEU A 126 -1 O LEU A 126 N ARG A 114 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 PRO A 193 0 SHEET 2 B 4 VAL A 199 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 B 4 PHE A 241 VAL A 248 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 PRO A 193 0 SHEET 2 C 4 VAL A 199 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 C 4 PHE A 241 VAL A 248 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLN A 222 ASP A 223 0 SHEET 2 D 4 SER A 214 ARG A 219 -1 N ARG A 219 O GLN A 222 SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 D 4 LEU A 270 LEU A 272 -1 O LEU A 270 N VAL A 261 SHEET 1 E 4 LYS B 8 SER B 13 0 SHEET 2 E 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 E 4 PHE B 63 PHE B 71 -1 O LEU B 65 N VAL B 29 SHEET 4 E 4 GLU B 51 GLN B 52 -1 N GLU B 51 O HIS B 68 SHEET 1 F 4 LYS B 8 SER B 13 0 SHEET 2 F 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 F 4 PHE B 63 PHE B 71 -1 O LEU B 65 N VAL B 29 SHEET 4 F 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 G 4 GLU B 46 LYS B 47 0 SHEET 2 G 4 GLU B 38 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 G 4 TYR B 79 LYS B 84 -1 O SER B 80 N LEU B 42 SHEET 4 G 4 LYS B 92 LYS B 95 -1 O LYS B 92 N VAL B 83 SHEET 1 H 8 GLU D 46 PRO D 47 0 SHEET 2 H 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 H 8 ASP D 19 VAL D 28 -1 N VAL D 28 O THR D 31 SHEET 4 H 8 SER D 4 ARG D 14 -1 N VAL D 12 O ARG D 21 SHEET 5 H 8 THR D 94 LEU D 103 -1 O LEU D 95 N ALA D 11 SHEET 6 H 8 LEU D 109 TYR D 118 -1 O ALA D 117 N GLN D 96 SHEET 7 H 8 ALA D 121 LEU D 126 -1 O ILE D 124 N ASP D 116 SHEET 8 H 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 I 4 LYS D 186 PRO D 193 0 SHEET 2 I 4 VAL D 199 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 I 4 PHE D 241 VAL D 249 -1 O ALA D 245 N CYS D 203 SHEET 4 I 4 GLU D 229 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 J 4 LYS D 186 PRO D 193 0 SHEET 2 J 4 VAL D 199 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 J 4 PHE D 241 VAL D 249 -1 O ALA D 245 N CYS D 203 SHEET 4 J 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 K 4 GLN D 222 ASP D 223 0 SHEET 2 K 4 SER D 214 ARG D 219 -1 N ARG D 219 O GLN D 222 SHEET 3 K 4 TYR D 257 GLN D 262 -1 O HIS D 260 N THR D 216 SHEET 4 K 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 L 4 LYS E 8 SER E 13 0 SHEET 2 L 4 ASN E 23 PHE E 32 -1 O ASN E 26 N TYR E 12 SHEET 3 L 4 PHE E 63 PHE E 71 -1 O LEU E 65 N VAL E 29 SHEET 4 L 4 GLU E 51 GLN E 52 -1 N GLU E 51 O HIS E 68 SHEET 1 M 4 LYS E 8 SER E 13 0 SHEET 2 M 4 ASN E 23 PHE E 32 -1 O ASN E 26 N TYR E 12 SHEET 3 M 4 PHE E 63 PHE E 71 -1 O LEU E 65 N VAL E 29 SHEET 4 M 4 SER E 56 PHE E 57 -1 N SER E 56 O TYR E 64 SHEET 1 N 4 GLU E 46 LYS E 47 0 SHEET 2 N 4 GLU E 38 LYS E 43 -1 N LYS E 43 O GLU E 46 SHEET 3 N 4 TYR E 79 LYS E 84 -1 O ARG E 82 N ASP E 40 SHEET 4 N 4 LYS E 92 LYS E 95 -1 O LYS E 92 N VAL E 83 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.03 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 27 CYS B 81 1555 1555 2.03 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.04 SSBOND 5 CYS D 203 CYS D 259 1555 1555 1.95 SSBOND 6 CYS E 27 CYS E 81 1555 1555 2.03 CISPEP 1 LEU A 197 GLY A 198 0 8.66 CISPEP 2 TYR A 209 PRO A 210 0 5.88 CISPEP 3 HIS B 33 PRO B 34 0 4.92 CISPEP 4 LEU D 197 GLY D 198 0 -0.05 CISPEP 5 TYR D 209 PRO D 210 0 0.05 CISPEP 6 HIS E 33 PRO E 34 0 2.42 CRYST1 96.731 37.651 111.430 90.00 113.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010338 0.000000 0.004401 0.00000 SCALE2 0.000000 0.026560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009754 0.00000