HEADER TRANSFERASE 16-FEB-11 3QQV TITLE CRYSTAL STRUCTURE OF GERANYLGERANYL PYROPHOSPHATE SYNTHASE FROM TITLE 2 CORYNEBACTERIUM GLUTAMICUM COMPLEXED WITH ISOPRENYL DIPHOSPHATE AND TITLE 3 MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 STRAIN: ATCC 13032; SOURCE 5 GENE: CGL2172; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, GERANYLGERANYL KEYWDS 2 PYROPHOSPHATE SYNTHASE, ISOPRENE BIOSYNTHESIS, TRANSFERASE, NEW YORK KEYWDS 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, ENZYME KEYWDS 4 FUNCTION INITIATIVE, EFI, PSI-2 EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,J.M.SAUDER,C.D.POULTER,J.A.GERLT,S.K.BURLEY, AUTHOR 2 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI),NEW YORK SGX RESEARCH AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 10-FEB-21 3QQV 1 AUTHOR REMARK SEQADV LINK REVDAT 7 21-NOV-18 3QQV 1 AUTHOR REVDAT 6 24-JAN-18 3QQV 1 AUTHOR REVDAT 5 08-MAY-13 3QQV 1 HET HETATM REVDAT 4 24-APR-13 3QQV 1 JRNL REVDAT 3 27-MAR-13 3QQV 1 JRNL REVDAT 2 13-MAR-13 3QQV 1 JRNL VERSN REVDAT 1 02-MAR-11 3QQV 0 JRNL AUTH F.H.WALLRAPP,J.J.PAN,G.RAMAMOORTHY,D.E.ALMONACID, JRNL AUTH 2 B.S.HILLERICH,R.SEIDEL,Y.PATSKOVSKY,P.C.BABBITT,S.C.ALMO, JRNL AUTH 3 M.P.JACOBSON,C.D.POULTER JRNL TITL PREDICTION OF FUNCTION FOR THE POLYPRENYL TRANSFERASE JRNL TITL 2 SUBGROUP IN THE ISOPRENOID SYNTHASE SUPERFAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E1196 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23493556 JRNL DOI 10.1073/PNAS.1300632110 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2159 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2710 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.16000 REMARK 3 B22 (A**2) : 2.16000 REMARK 3 B33 (A**2) : -3.25000 REMARK 3 B12 (A**2) : 1.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2829 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3847 ; 1.141 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 367 ; 4.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.197 ;23.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;14.711 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2163 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1795 ; 2.894 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2869 ; 4.557 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 6.344 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 973 ; 9.609 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30934 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M POTASSIUM BROMIDE, PH 7.5, 30% REMARK 280 PEG MME2000, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.27333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.54667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.54667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.27333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -17.27333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 PHE A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 HIS A 14 REMARK 465 ASP A 15 REMARK 465 GLU A 373 REMARK 465 GLY A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 16 CG CD1 CD2 REMARK 470 PHE A 136 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 60 53.77 -98.56 REMARK 500 ILE A 221 -54.88 -125.69 REMARK 500 LYS A 310 -49.89 -134.92 REMARK 500 THR A 312 -30.84 -134.17 REMARK 500 GLU A 370 -52.54 -123.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 381 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 ASP A 112 OD2 87.0 REMARK 620 3 DMA A 384 O1A 96.9 85.8 REMARK 620 4 HOH A 398 O 157.7 78.5 98.9 REMARK 620 5 HOH A 399 O 94.5 170.1 103.6 97.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 382 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD1 REMARK 620 2 ASP A 112 OD2 75.0 REMARK 620 3 DMA A 384 O3B 91.6 161.4 REMARK 620 4 DMA A 384 O1A 81.6 82.9 82.5 REMARK 620 5 HOH A 438 O 86.1 94.1 97.8 167.7 REMARK 620 6 HOH A 439 O 152.7 88.4 98.8 74.8 117.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMA A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMA A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 386 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-20008A RELATED DB: TARGETDB DBREF 3QQV A 4 372 UNP Q8NNM1 Q8NNM1_CORGL 2 370 SEQADV 3QQV MSE A 1 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV SER A 2 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV LEU A 3 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV GLU A 373 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV GLY A 374 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV HIS A 375 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV HIS A 376 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV HIS A 377 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV HIS A 378 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV HIS A 379 UNP Q8NNM1 EXPRESSION TAG SEQADV 3QQV HIS A 380 UNP Q8NNM1 EXPRESSION TAG SEQRES 1 A 380 MSE SER LEU LYS ASP VAL SER LEU SER SER PHE ASP ALA SEQRES 2 A 380 HIS ASP LEU ASP LEU ASP LYS PHE PRO GLU VAL VAL ARG SEQRES 3 A 380 ASP ARG LEU THR GLN PHE LEU ASP ALA GLN GLU LEU THR SEQRES 4 A 380 ILE ALA ASP ILE GLY ALA PRO VAL THR ASP ALA VAL ALA SEQRES 5 A 380 HIS LEU ARG SER PHE VAL LEU ASN GLY GLY LYS ARG ILE SEQRES 6 A 380 ARG PRO LEU TYR ALA TRP ALA GLY PHE LEU ALA ALA GLN SEQRES 7 A 380 GLY HIS LYS ASN SER SER GLU LYS LEU GLU SER VAL LEU SEQRES 8 A 380 ASP ALA ALA ALA SER LEU GLU PHE ILE GLN ALA CYS ALA SEQRES 9 A 380 LEU ILE HIS ASP ASP ILE ILE ASP SER SER ASP THR ARG SEQRES 10 A 380 ARG GLY ALA PRO THR VAL HIS ARG ALA VAL GLU ALA ASP SEQRES 11 A 380 HIS ARG ALA ASN ASN PHE GLU GLY ASP PRO GLU HIS PHE SEQRES 12 A 380 GLY VAL SER VAL SER ILE LEU ALA GLY ASP MSE ALA LEU SEQRES 13 A 380 VAL TRP ALA GLU ASP MSE LEU GLN ASP SER GLY LEU SER SEQRES 14 A 380 ALA GLU ALA LEU ALA ARG THR ARG ASP ALA TRP ARG GLY SEQRES 15 A 380 MSE ARG THR GLU VAL ILE GLY GLY GLN LEU LEU ASP ILE SEQRES 16 A 380 TYR LEU GLU SER HIS ALA ASN GLU SER VAL GLU LEU ALA SEQRES 17 A 380 ASP SER VAL ASN ARG PHE LYS THR ALA ALA TYR THR ILE SEQRES 18 A 380 ALA ARG PRO LEU HIS LEU GLY ALA SER ILE ALA GLY GLY SEQRES 19 A 380 SER PRO GLN LEU ILE ASP ALA LEU LEU HIS TYR GLY HIS SEQRES 20 A 380 ASP ILE GLY ILE ALA PHE GLN LEU ARG ASP ASP LEU LEU SEQRES 21 A 380 GLY VAL PHE GLY ASP PRO ALA ILE THR GLY LYS PRO ALA SEQRES 22 A 380 GLY ASP ASP ILE ARG GLU GLY LYS ARG THR VAL LEU LEU SEQRES 23 A 380 ALA LEU ALA LEU GLN ARG ALA ASP LYS GLN SER PRO GLU SEQRES 24 A 380 ALA ALA THR ALA ILE ARG ALA GLY VAL GLY LYS VAL THR SEQRES 25 A 380 SER PRO GLU ASP ILE ALA VAL ILE THR GLU HIS ILE ARG SEQRES 26 A 380 ALA THR GLY ALA GLU GLU GLU VAL GLU GLN ARG ILE SER SEQRES 27 A 380 GLN LEU THR GLU SER GLY LEU ALA HIS LEU ASP ASP VAL SEQRES 28 A 380 ASP ILE PRO ASP GLU VAL ARG ALA GLN LEU ARG ALA LEU SEQRES 29 A 380 ALA ILE ARG SER THR GLU ARG ARG GLU GLY HIS HIS HIS SEQRES 30 A 380 HIS HIS HIS MODRES 3QQV MSE A 154 MET SELENOMETHIONINE MODRES 3QQV MSE A 162 MET SELENOMETHIONINE MODRES 3QQV MSE A 183 MET SELENOMETHIONINE HET MSE A 154 8 HET MSE A 162 8 HET MSE A 183 8 HET MG A 381 1 HET MG A 382 1 HET DMA A 383 14 HET DMA A 384 14 HET UNL A 385 12 HET GOL A 386 6 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM DMA DIMETHYLALLYL DIPHOSPHATE HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 MG 2(MG 2+) FORMUL 4 DMA 2(C5 H12 O7 P2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *146(H2 O) HELIX 1 1 LYS A 20 GLY A 44 1 25 HELIX 2 2 GLY A 44 ASN A 60 1 17 HELIX 3 3 ARG A 64 ALA A 77 1 14 HELIX 4 4 GLN A 78 SER A 83 1 6 HELIX 5 5 LYS A 86 SER A 96 1 11 HELIX 6 6 SER A 96 ASP A 112 1 17 HELIX 7 7 THR A 122 ALA A 129 1 8 HELIX 8 8 ALA A 129 ASN A 135 1 7 HELIX 9 9 ASP A 139 ASP A 165 1 27 HELIX 10 10 SER A 169 HIS A 200 1 32 HELIX 11 11 SER A 204 THR A 216 1 13 HELIX 12 12 THR A 216 ILE A 221 1 6 HELIX 13 13 ILE A 221 ALA A 232 1 12 HELIX 14 14 SER A 235 GLY A 264 1 30 HELIX 15 15 ASP A 265 GLY A 270 1 6 HELIX 16 16 GLY A 274 GLY A 280 1 7 HELIX 17 17 THR A 283 LYS A 295 1 13 HELIX 18 18 SER A 297 VAL A 308 1 12 HELIX 19 19 SER A 313 THR A 327 1 15 HELIX 20 20 GLY A 328 HIS A 347 1 20 HELIX 21 21 LEU A 348 ASP A 350 5 3 HELIX 22 22 PRO A 354 GLU A 370 1 17 SHEET 1 A 2 THR A 116 ARG A 117 0 SHEET 2 A 2 ALA A 120 PRO A 121 -1 O ALA A 120 N ARG A 117 LINK C ASP A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N ALA A 155 1555 1555 1.33 LINK C ASP A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N LEU A 163 1555 1555 1.33 LINK C GLY A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N ARG A 184 1555 1555 1.33 LINK OD2 ASP A 108 MG MG A 381 1555 1555 2.28 LINK OD1 ASP A 108 MG MG A 382 1555 1555 2.15 LINK OD2 ASP A 112 MG MG A 381 1555 1555 2.32 LINK OD2 ASP A 112 MG MG A 382 1555 1555 2.72 LINK MG MG A 381 O1A DMA A 384 1555 1555 2.29 LINK MG MG A 381 O HOH A 398 1555 1555 2.24 LINK MG MG A 381 O HOH A 399 1555 1555 1.90 LINK MG MG A 382 O3B DMA A 384 1555 1555 1.93 LINK MG MG A 382 O1A DMA A 384 1555 1555 1.94 LINK MG MG A 382 O HOH A 438 1555 1555 1.98 LINK MG MG A 382 O HOH A 439 1555 1555 2.57 SITE 1 AC1 7 ASP A 108 ASP A 112 ASP A 194 MG A 382 SITE 2 AC1 7 DMA A 384 HOH A 398 HOH A 399 SITE 1 AC2 7 ASP A 108 ASP A 112 LYS A 271 MG A 381 SITE 2 AC2 7 DMA A 384 HOH A 438 HOH A 439 SITE 1 AC3 13 GLY A 62 LYS A 63 ILE A 65 ARG A 66 SITE 2 AC3 13 GLN A 101 ARG A 118 GLN A 254 DMA A 384 SITE 3 AC3 13 HOH A 400 HOH A 433 HOH A 449 HOH A 463 SITE 4 AC3 13 HOH A 464 SITE 1 AC4 17 ALA A 104 ASP A 108 ASP A 112 ARG A 117 SITE 2 AC4 17 VAL A 187 GLN A 191 LYS A 215 LYS A 271 SITE 3 AC4 17 LYS A 281 MG A 381 MG A 382 DMA A 383 SITE 4 AC4 17 HOH A 399 HOH A 431 HOH A 432 HOH A 438 SITE 5 AC4 17 HOH A 439 SITE 1 AC5 5 SER A 84 GLU A 85 GLU A 171 ARG A 175 SITE 2 AC5 5 HOH A 469 CRYST1 123.636 123.636 51.820 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008088 0.004670 0.000000 0.00000 SCALE2 0.000000 0.009340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019298 0.00000