HEADER OXIDOREDUCTASE 16-FEB-11 3QQX TITLE REDUCED NATIVE INTERMEDIATE OF THE MULTICOPPER OXIDASE CUEO COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLUE COPPER OXIDASE CUEO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COPPER EFFLUX OXIDASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B0123, CUEO, JW0119, YACK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASK-IBA3 KEYWDS NATIVE INTERMEDIATE, MULTI COPPER OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.R.MONTFORT,S.A.ROBERTS,S.K.SINGH REVDAT 3 13-SEP-23 3QQX 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3QQX 1 REMARK REVDAT 1 29-FEB-12 3QQX 0 JRNL AUTH S.K.SINGH,S.A.ROBERTS,J.T.HAZZARD,S.FRANKE-MCDEVITT, JRNL AUTH 2 A.WEICHSEL,C.RENSING,W.R.MONTFORT JRNL TITL CUEO E506D MUTANT: CRYSTAL STRUCTURE OF REDUCED NATIVE JRNL TITL 2 INTERMEDIATE, KINETICS, AND IMPAIRMENT OF PRODUCT RELEASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 69981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 579 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.69000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.136 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3851 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2574 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5246 ; 1.540 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6317 ; 0.919 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 6.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;35.750 ;24.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;12.761 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.851 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 573 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4361 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 725 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2438 ; 0.845 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 991 ; 0.254 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3934 ; 1.431 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1413 ; 2.304 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1312 ; 3.573 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC CONFOCAL BLUE REMARK 200 OPTICS : OSMIC CONFOCAL BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 53.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NONE REMARK 200 STARTING MODEL: PDB ENTRY 1KV7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% POLYETHYLENE GLYCOL 4000, 0.2 M REMARK 280 AMMONIUM ACETATE, 0.1 M SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.68750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 398A REMARK 465 GLN A 398B REMARK 465 MET A 398C REMARK 465 MET A 398D REMARK 465 GLY A 398E REMARK 465 HIS A 398F REMARK 465 MET A 398G REMARK 465 GLY A 398H REMARK 465 HIS A 398I REMARK 465 GLY A 398J REMARK 465 ASN A 398K REMARK 465 MET A 398L REMARK 465 ASN A 398M REMARK 465 HIS A 398N REMARK 465 MET A 398O REMARK 465 ASN A 398P REMARK 465 HIS A 398Q REMARK 465 GLY A 398R REMARK 465 GLY A 398S REMARK 465 LYS A 398T REMARK 465 LEU A 523 REMARK 465 SER A 524 REMARK 465 ALA A 525 REMARK 465 TRP A 526 REMARK 465 SER A 527 REMARK 465 HIS A 528 REMARK 465 PRO A 529 REMARK 465 ASN A 530 REMARK 465 PHE A 531 REMARK 465 GLU A 532 REMARK 465 LYS A 533 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 74 -140.58 61.52 REMARK 500 ASP A 132 59.82 -143.76 REMARK 500 MET A 171 44.08 -94.57 REMARK 500 ILE A 178 -73.55 -116.97 REMARK 500 ASP A 197 78.67 -103.79 REMARK 500 ALA A 241 -13.14 -144.68 REMARK 500 SER A 259 -163.37 -119.43 REMARK 500 ALA A 308 135.71 -38.18 REMARK 500 ALA A 326 115.92 -160.43 REMARK 500 PHE A 415 126.37 -36.91 REMARK 500 GLU A 476 87.49 -151.52 REMARK 500 HIS A 494 59.34 -147.10 REMARK 500 LEU A 517 -35.56 -137.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 322 -11.24 REMARK 500 ILE A 322 11.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 608 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 30 OE1 REMARK 620 2 HOH A 534 O 93.3 REMARK 620 3 HOH A1074 O 92.9 172.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 NE2 REMARK 620 2 HIS A 446 NE2 162.2 REMARK 620 3 O A 701 O 76.7 85.5 REMARK 620 4 HOH A1027 O 103.0 94.6 172.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 103 ND1 REMARK 620 2 HIS A 141 NE2 133.7 REMARK 620 3 HIS A 501 NE2 105.7 113.9 REMARK 620 4 O A 702 O 127.2 88.2 72.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 NE2 REMARK 620 2 HIS A 448 NE2 101.1 REMARK 620 3 HIS A 499 NE2 105.8 109.8 REMARK 620 4 O A 701 O 125.8 90.1 119.8 REMARK 620 5 O A 702 O 94.4 155.7 83.2 65.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 605 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 355 SD REMARK 620 2 ASP A 360 OD1 106.2 REMARK 620 3 ASP A 439 OD1 101.7 109.3 REMARK 620 4 MET A 441 SD 113.9 99.9 124.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 606 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 358 SD REMARK 620 2 MET A 362 SD 94.5 REMARK 620 3 HIS A 398 NE2 132.9 111.1 REMARK 620 4 HOH A 574 O 80.1 107.1 124.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 607 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 368 SD REMARK 620 2 MET A 376 SD 103.1 REMARK 620 3 HOH A 805 O 120.2 134.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 443 ND1 REMARK 620 2 CYS A 500 SG 125.8 REMARK 620 3 HIS A 505 ND1 107.7 126.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O A 702 DBREF 3QQX A 29 516 UNP P36649 CUEO_ECOLI 29 516 SEQADV 3QQX ASP A 506 UNP P36649 GLU 506 ENGINEERED MUTATION SEQADV 3QQX LEU A 517 UNP P36649 EXPRESSION TAG SEQADV 3QQX GLN A 518 UNP P36649 EXPRESSION TAG SEQADV 3QQX GLY A 519 UNP P36649 EXPRESSION TAG SEQADV 3QQX ASP A 520 UNP P36649 EXPRESSION TAG SEQADV 3QQX HIS A 521 UNP P36649 EXPRESSION TAG SEQADV 3QQX GLY A 522 UNP P36649 EXPRESSION TAG SEQADV 3QQX LEU A 523 UNP P36649 EXPRESSION TAG SEQADV 3QQX SER A 524 UNP P36649 EXPRESSION TAG SEQADV 3QQX ALA A 525 UNP P36649 EXPRESSION TAG SEQADV 3QQX TRP A 526 UNP P36649 EXPRESSION TAG SEQADV 3QQX SER A 527 UNP P36649 EXPRESSION TAG SEQADV 3QQX HIS A 528 UNP P36649 EXPRESSION TAG SEQADV 3QQX PRO A 529 UNP P36649 EXPRESSION TAG SEQADV 3QQX ASN A 530 UNP P36649 EXPRESSION TAG SEQADV 3QQX PHE A 531 UNP P36649 EXPRESSION TAG SEQADV 3QQX GLU A 532 UNP P36649 EXPRESSION TAG SEQADV 3QQX LYS A 533 UNP P36649 EXPRESSION TAG SEQRES 1 A 505 ALA GLU ARG PRO THR LEU PRO ILE PRO ASP LEU LEU THR SEQRES 2 A 505 THR ASP ALA ARG ASN ARG ILE GLN LEU THR ILE GLY ALA SEQRES 3 A 505 GLY GLN SER THR PHE GLY GLY LYS THR ALA THR THR TRP SEQRES 4 A 505 GLY TYR ASN GLY ASN LEU LEU GLY PRO ALA VAL LYS LEU SEQRES 5 A 505 GLN ARG GLY LYS ALA VAL THR VAL ASP ILE TYR ASN GLN SEQRES 6 A 505 LEU THR GLU GLU THR THR LEU HIS TRP HIS GLY LEU GLU SEQRES 7 A 505 VAL PRO GLY GLU VAL ASP GLY GLY PRO GLN GLY ILE ILE SEQRES 8 A 505 PRO PRO GLY GLY LYS ARG SER VAL THR LEU ASN VAL ASP SEQRES 9 A 505 GLN PRO ALA ALA THR CYS TRP PHE HIS PRO HIS GLN HIS SEQRES 10 A 505 GLY LYS THR GLY ARG GLN VAL ALA MET GLY LEU ALA GLY SEQRES 11 A 505 LEU VAL VAL ILE GLU ASP ASP GLU ILE LEU LYS LEU MET SEQRES 12 A 505 LEU PRO LYS GLN TRP GLY ILE ASP ASP VAL PRO VAL ILE SEQRES 13 A 505 VAL GLN ASP LYS LYS PHE SER ALA ASP GLY GLN ILE ASP SEQRES 14 A 505 TYR GLN LEU ASP VAL MET THR ALA ALA VAL GLY TRP PHE SEQRES 15 A 505 GLY ASP THR LEU LEU THR ASN GLY ALA ILE TYR PRO GLN SEQRES 16 A 505 HIS ALA ALA PRO ARG GLY TRP LEU ARG LEU ARG LEU LEU SEQRES 17 A 505 ASN GLY CYS ASN ALA ARG SER LEU ASN PHE ALA THR SER SEQRES 18 A 505 ASP ASN ARG PRO LEU TYR VAL ILE ALA SER ASP GLY GLY SEQRES 19 A 505 LEU LEU PRO GLU PRO VAL LYS VAL SER GLU LEU PRO VAL SEQRES 20 A 505 LEU MET GLY GLU ARG PHE GLU VAL LEU VAL GLU VAL ASN SEQRES 21 A 505 ASP ASN LYS PRO PHE ASP LEU VAL THR LEU PRO VAL SER SEQRES 22 A 505 GLN MET GLY MET ALA ILE ALA PRO PHE ASP LYS PRO HIS SEQRES 23 A 505 PRO VAL MET ARG ILE GLN PRO ILE ALA ILE SER ALA SER SEQRES 24 A 505 GLY ALA LEU PRO ASP THR LEU SER SER LEU PRO ALA LEU SEQRES 25 A 505 PRO SER LEU GLU GLY LEU THR VAL ARG LYS LEU GLN LEU SEQRES 26 A 505 SER MET ASP PRO MET LEU ASP MET MET GLY MET GLN MET SEQRES 27 A 505 LEU MET GLU LYS TYR GLY ASP GLN ALA MET ALA GLY MET SEQRES 28 A 505 ASP HIS SER GLN MET MET GLY HIS MET GLY HIS GLY ASN SEQRES 29 A 505 MET ASN HIS MET ASN HIS GLY GLY LYS PHE ASP PHE HIS SEQRES 30 A 505 HIS ALA ASN LYS ILE ASN GLY GLN ALA PHE ASP MET ASN SEQRES 31 A 505 LYS PRO MET PHE ALA ALA ALA LYS GLY GLN TYR GLU ARG SEQRES 32 A 505 TRP VAL ILE SER GLY VAL GLY ASP MET MET LEU HIS PRO SEQRES 33 A 505 PHE HIS ILE HIS GLY THR GLN PHE ARG ILE LEU SER GLU SEQRES 34 A 505 ASN GLY LYS PRO PRO ALA ALA HIS ARG ALA GLY TRP LYS SEQRES 35 A 505 ASP THR VAL LYS VAL GLU GLY ASN VAL SER GLU VAL LEU SEQRES 36 A 505 VAL LYS PHE ASN HIS ASP ALA PRO LYS GLU HIS ALA TYR SEQRES 37 A 505 MET ALA HIS CYS HIS LEU LEU GLU HIS ASP ASP THR GLY SEQRES 38 A 505 MET MET LEU GLY PHE THR VAL LEU GLN GLY ASP HIS GLY SEQRES 39 A 505 LEU SER ALA TRP SER HIS PRO ASN PHE GLU LYS HET CU A 601 1 HET CU A 602 1 HET CU1 A 603 1 HET CU1 A 604 1 HET CU1 A 605 1 HET CU1 A 606 1 HET CU1 A 607 1 HET CU A 608 1 HET O A 701 1 HET O A 702 1 HETNAM CU COPPER (II) ION HETNAM CU1 COPPER (I) ION HETNAM O OXYGEN ATOM FORMUL 2 CU 3(CU 2+) FORMUL 4 CU1 5(CU 1+) FORMUL 10 O 2(O) FORMUL 12 HOH *579(H2 O) HELIX 1 1 PRO A 108 ASP A 112 5 5 HELIX 2 2 LYS A 147 MET A 154 1 8 HELIX 3 3 GLU A 166 LEU A 170 5 5 HELIX 4 4 ASP A 201 GLY A 208 1 8 HELIX 5 5 ASP A 356 GLY A 372 1 17 HELIX 6 6 ASP A 373 ALA A 377 5 5 HELIX 7 7 ALA A 463 ALA A 467 5 5 HELIX 8 8 PRO A 491 ALA A 495 5 5 HELIX 9 9 LEU A 502 THR A 508 1 7 SHEET 1 A 5 LEU A 39 LEU A 40 0 SHEET 2 A 5 ALA A 77 GLN A 81 1 O LYS A 79 N LEU A 40 SHEET 3 A 5 GLY A 158 GLU A 163 1 O VAL A 161 N LEU A 80 SHEET 4 A 5 ALA A 136 HIS A 141 -1 N ALA A 136 O ILE A 162 SHEET 5 A 5 HIS A 101 HIS A 103 -1 N HIS A 101 O HIS A 141 SHEET 1 B 4 LYS A 62 TYR A 69 0 SHEET 2 B 4 ARG A 47 PHE A 59 -1 N GLY A 55 O THR A 66 SHEET 3 B 4 ALA A 85 ASN A 92 1 O TYR A 91 N ILE A 52 SHEET 4 B 4 LYS A 124 ASN A 130 -1 O ARG A 125 N ILE A 90 SHEET 1 C 6 THR A 213 THR A 216 0 SHEET 2 C 6 ASP A 180 LYS A 188 -1 N GLN A 186 O LEU A 215 SHEET 3 C 6 GLY A 229 ASN A 237 1 O ARG A 234 N VAL A 183 SHEET 4 C 6 ARG A 280 VAL A 287 -1 O VAL A 287 N GLY A 229 SHEET 5 C 6 LEU A 254 SER A 259 -1 N ILE A 257 O GLU A 282 SHEET 6 C 6 GLY A 262 VAL A 270 -1 O VAL A 270 N LEU A 254 SHEET 1 D 5 GLN A 223 PRO A 227 0 SHEET 2 D 5 HIS A 314 ILE A 322 1 O ARG A 318 N HIS A 224 SHEET 3 D 5 PHE A 293 THR A 297 -1 N PHE A 293 O ILE A 319 SHEET 4 D 5 LEU A 244 THR A 248 -1 N ALA A 247 O VAL A 296 SHEET 5 D 5 LEU A 273 VAL A 275 -1 O VAL A 275 N LEU A 244 SHEET 1 E 6 ASN A 408 ILE A 410 0 SHEET 2 E 6 VAL A 348 MET A 355 -1 N SER A 354 O LYS A 409 SHEET 3 E 6 GLU A 430 SER A 435 1 O VAL A 433 N ARG A 349 SHEET 4 E 6 VAL A 479 VAL A 484 -1 O SER A 480 N ILE A 434 SHEET 5 E 6 PHE A 452 SER A 456 -1 N ARG A 453 O LEU A 483 SHEET 6 E 6 TRP A 469 LYS A 470 -1 O LYS A 470 N PHE A 452 SHEET 1 F 5 PHE A 422 ALA A 424 0 SHEET 2 F 5 MET A 511 VAL A 516 1 O THR A 515 N ALA A 424 SHEET 3 F 5 TYR A 496 CYS A 500 -1 N ALA A 498 O LEU A 512 SHEET 4 F 5 HIS A 443 ILE A 447 -1 N HIS A 446 O HIS A 499 SHEET 5 F 5 THR A 472 VAL A 475 -1 O VAL A 475 N HIS A 443 LINK OE1 GLU A 30 CU CU A 608 1555 1555 2.06 LINK NE2 HIS A 101 CU CU A 601 1555 1555 2.02 LINK ND1 HIS A 103 CU CU1 A 603 1555 1555 1.98 LINK NE2 HIS A 141 CU CU1 A 603 1555 1555 2.11 LINK NE2 HIS A 143 CU CU A 602 1555 1555 2.06 LINK SD MET A 355 CU CU1 A 605 1555 1555 2.22 LINK SD MET A 358 CU CU1 A 606 1555 1555 2.54 LINK OD1 ASP A 360 CU CU1 A 605 1555 1555 2.18 LINK SD MET A 362 CU CU1 A 606 1555 1555 2.31 LINK SD MET A 368 CU CU1 A 607 1555 1555 2.34 LINK SD MET A 376 CU CU1 A 607 1555 1555 2.22 LINK NE2 HIS A 398 CU CU1 A 606 1555 1555 2.37 LINK OD1 ASP A 439 CU CU1 A 605 1555 1555 2.14 LINK SD MET A 441 CU CU1 A 605 1555 1555 2.31 LINK ND1 HIS A 443 CU CU1 A 604 1555 1555 2.13 LINK NE2 HIS A 446 CU CU A 601 1555 1555 2.01 LINK NE2 HIS A 448 CU CU A 602 1555 1555 2.08 LINK NE2 HIS A 499 CU CU A 602 1555 1555 2.10 LINK SG CYS A 500 CU CU1 A 604 1555 1555 2.22 LINK NE2 HIS A 501 CU CU1 A 603 1555 1555 2.06 LINK ND1 HIS A 505 CU CU1 A 604 1555 1555 2.14 LINK O HOH A 534 CU CU A 608 1555 1555 2.01 LINK O HOH A 574 CU CU1 A 606 1555 1555 2.25 LINK CU CU A 601 O O A 701 1555 1555 2.00 LINK CU CU A 601 O HOH A1027 1555 1555 2.38 LINK CU CU A 602 O O A 701 1555 1555 2.21 LINK CU CU A 602 O O A 702 1555 1555 2.07 LINK CU CU1 A 603 O O A 702 1555 1555 2.69 LINK CU CU1 A 607 O HOH A 805 1555 1555 2.65 LINK CU CU A 608 O HOH A1074 1555 1555 2.07 CISPEP 1 ALA A 308 PRO A 309 0 0.16 SITE 1 AC1 7 HIS A 101 HIS A 103 HIS A 446 HIS A 448 SITE 2 AC1 7 CU A 602 O A 701 HOH A1027 SITE 1 AC2 7 HIS A 143 HIS A 446 HIS A 448 HIS A 499 SITE 2 AC2 7 CU A 601 O A 701 O A 702 SITE 1 AC3 5 HIS A 103 HIS A 141 HIS A 501 O A 701 SITE 2 AC3 5 O A 702 SITE 1 AC4 4 HIS A 443 CYS A 500 HIS A 505 MET A 510 SITE 1 AC5 4 MET A 355 ASP A 360 ASP A 439 MET A 441 SITE 1 AC6 4 MET A 358 MET A 362 HIS A 398 HOH A 574 SITE 1 AC7 3 MET A 368 MET A 376 HOH A 805 SITE 1 AC8 5 GLU A 30 ASP A 360 HOH A 534 HOH A 564 SITE 2 AC8 5 HOH A1074 SITE 1 AC9 8 HIS A 101 HIS A 103 HIS A 446 HIS A 448 SITE 2 AC9 8 CU A 601 CU A 602 CU1 A 603 O A 702 SITE 1 BC1 8 HIS A 141 HIS A 143 HIS A 499 HIS A 501 SITE 2 BC1 8 CU A 602 CU1 A 603 O A 701 HOH A 858 CRYST1 50.173 91.375 54.328 90.00 102.22 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019931 0.000000 0.004317 0.00000 SCALE2 0.000000 0.010944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018833 0.00000