HEADER LYASE 17-FEB-11 3QRE TITLE CRYSTAL STRUCTURE OF AN ENOYL-COA HYDRATASE ECHA12_1 FROM TITLE 2 MYCOBACTERIUM MARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE, ECHA12_1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM M; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: ATCC BAA-535 / M; SOURCE 5 GENE: ECHA12_1, MMAR_4015; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, MYCOBACTERIUM, TUBERCULOSIS, ENOYL-COA, KEYWDS 3 COENZYME A, HYDRATASE, FATTY ACID METABOLISM, OPPORTUNISTIC KEYWDS 4 INFECTIONS IN HUMANS, ASSOCIATED WITH SWIMMING, FISH-TANK, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3QRE 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 3QRE 1 JRNL VERSN REVDAT 1 02-MAR-11 3QRE 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 9002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 624 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1443 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.343 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.371 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1473 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2008 ; 1.323 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 5.679 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;32.430 ;21.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 212 ;13.999 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 236 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1111 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 981 ; 0.622 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1550 ; 1.157 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 492 ; 1.996 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 458 ; 3.251 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3749 20.0564 -6.6945 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0619 REMARK 3 T33: 0.0165 T12: -0.0018 REMARK 3 T13: -0.0038 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.7843 L22: 1.0928 REMARK 3 L33: 1.1130 L12: -0.6163 REMARK 3 L13: -0.2331 L23: 0.1381 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: 0.0784 S13: 0.0376 REMARK 3 S21: -0.0786 S22: -0.0671 S23: -0.0256 REMARK 3 S31: -0.0193 S32: -0.1027 S33: -0.0320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3GOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 39.66 MG/ML MYMAA.00305.A.A1 PS00827 REMARK 280 AGAINST PACT SCREEN CONDITION F10: 0.02 M NA/K PHOSPHATE, 0.1 M REMARK 280 BIS-TRIS PROPANE, PH 6.5, 20% PEG3350 WITH 25% ETHYLENE GLYCOL REMARK 280 AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 218672F10, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.85000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.85000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 43.85000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 43.85000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 43.85000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 43.85000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 43.85000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 43.85000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 43.85000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 43.85000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 43.85000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 43.85000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 43.85000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 43.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 279 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 TYR A 71 REMARK 465 LEU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ALA A 75 REMARK 465 ASP A 76 REMARK 465 ALA A 77 REMARK 465 ALA A 78 REMARK 465 ALA A 79 REMARK 465 GLY A 80 REMARK 465 TYR A 81 REMARK 465 ASP A 82 REMARK 465 LYS A 83 REMARK 465 THR A 84 REMARK 465 MET A 85 REMARK 465 ALA A 86 REMARK 465 LYS A 87 REMARK 465 ALA A 88 REMARK 465 LYS A 89 REMARK 465 ASP A 90 REMARK 465 ALA A 91 REMARK 465 ASN A 92 REMARK 465 LEU A 93 REMARK 465 ALA A 94 REMARK 465 ASP A 95 REMARK 465 LEU A 96 REMARK 465 VAL A 97 REMARK 465 GLY A 98 REMARK 465 GLU A 99 REMARK 465 ASP A 234 REMARK 465 VAL A 235 REMARK 465 VAL A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 THR A 239 REMARK 465 SER A 240 REMARK 465 HIS A 241 REMARK 465 ALA A 242 REMARK 465 GLU A 243 REMARK 465 VAL A 244 REMARK 465 LEU A 245 REMARK 465 LEU A 246 REMARK 465 ARG A 247 REMARK 465 GLU A 248 REMARK 465 ALA A 249 REMARK 465 MET A 250 REMARK 465 PRO A 251 REMARK 465 ARG A 252 REMARK 465 PRO A 253 REMARK 465 ASP A 254 REMARK 465 VAL A 255 REMARK 465 ILE A 256 REMARK 465 GLU A 257 REMARK 465 GLY A 258 REMARK 465 ILE A 259 REMARK 465 VAL A 260 REMARK 465 SER A 261 REMARK 465 PHE A 262 REMARK 465 LEU A 263 REMARK 465 GLU A 264 REMARK 465 LYS A 265 REMARK 465 ARG A 266 REMARK 465 PRO A 267 REMARK 465 PRO A 268 REMARK 465 GLN A 269 REMARK 465 PHE A 270 REMARK 465 PRO A 271 REMARK 465 SER A 272 REMARK 465 LEU A 273 REMARK 465 THR A 274 REMARK 465 SER A 275 REMARK 465 SER A 276 REMARK 465 GLU A 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 GLN A 199 CG CD OE1 NE2 REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 183 CG GLU A 183 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 67 106.17 -165.08 REMARK 500 PRO A 119 119.79 -31.17 REMARK 500 PHE A 155 19.08 58.98 REMARK 500 THR A 165 -92.09 -124.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 279 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 311 O REMARK 620 2 HOH A 325 O 100.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYMAA.00305.A RELATED DB: TARGETDB DBREF 3QRE A 1 277 UNP B2HQD1 B2HQD1_MYCMM 1 277 SEQADV 3QRE MET A -20 UNP B2HQD1 INITIATING METHIONINE SEQADV 3QRE ALA A -19 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE HIS A -18 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE HIS A -17 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE HIS A -16 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE HIS A -15 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE HIS A -14 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE HIS A -13 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE MET A -12 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE GLY A -11 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE THR A -10 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE LEU A -9 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE GLU A -8 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE ALA A -7 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE GLN A -6 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE THR A -5 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE GLN A -4 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE GLY A -3 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE PRO A -2 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE GLY A -1 UNP B2HQD1 EXPRESSION TAG SEQADV 3QRE SER A 0 UNP B2HQD1 EXPRESSION TAG SEQRES 1 A 298 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 298 ALA GLN THR GLN GLY PRO GLY SER MET SER ALA ALA ASP SEQRES 3 A 298 ALA GLN ASP ALA VAL LEU TYR GLU ALA THR PRO GLY GLY SEQRES 4 A 298 VAL ALA ILE ILE THR PHE ASN ARG ALA ASP ARG LEU ASN SEQRES 5 A 298 ALA TRP GLY PRO ASP LEU ALA ALA GLY PHE TYR ALA ALA SEQRES 6 A 298 ILE ASP ARG ALA GLU ALA ASP PRO GLY ILE ARG VAL ILE SEQRES 7 A 298 VAL LEU THR GLY ARG GLY ARG GLY PHE CYS ALA GLY ALA SEQRES 8 A 298 TYR LEU GLY SER ALA ASP ALA ALA ALA GLY TYR ASP LYS SEQRES 9 A 298 THR MET ALA LYS ALA LYS ASP ALA ASN LEU ALA ASP LEU SEQRES 10 A 298 VAL GLY GLU ARG PRO PRO HIS PHE VAL THR MET LEU ARG SEQRES 11 A 298 LYS PRO VAL ILE ALA ALA ILE ASN GLY PRO CYS VAL GLY SEQRES 12 A 298 ILE GLY LEU THR GLN ALA LEU MET CYS ASP VAL ARG PHE SEQRES 13 A 298 ALA ALA ALA GLY ALA LYS PHE ALA ALA VAL PHE ALA ARG SEQRES 14 A 298 ARG GLY LEU ILE ALA GLU PHE GLY ILE SER TRP ILE LEU SEQRES 15 A 298 PRO ARG LEU THR SER TRP ALA VAL ALA LEU ASP LEU LEU SEQRES 16 A 298 LEU SER GLY ARG THR PHE LEU ALA GLU GLU ALA ALA GLN SEQRES 17 A 298 LEU GLY LEU VAL LYS GLU VAL VAL THR PRO GLU GLN LEU SEQRES 18 A 298 MET PRO ARG ALA LEU GLU TYR ALA GLU ASP ILE ALA ARG SEQRES 19 A 298 TYR CYS SER PRO SER SER MET ALA VAL ILE LYS ARG GLN SEQRES 20 A 298 VAL TYR GLY ASP ALA THR ARG ASP VAL VAL GLU ALA THR SEQRES 21 A 298 SER HIS ALA GLU VAL LEU LEU ARG GLU ALA MET PRO ARG SEQRES 22 A 298 PRO ASP VAL ILE GLU GLY ILE VAL SER PHE LEU GLU LYS SEQRES 23 A 298 ARG PRO PRO GLN PHE PRO SER LEU THR SER SER GLU HET CL A 278 1 HET K A 279 1 HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION FORMUL 2 CL CL 1- FORMUL 3 K K 1+ FORMUL 4 HOH *65(H2 O) HELIX 1 1 ARG A 26 LEU A 30 5 5 HELIX 2 2 GLY A 34 ASP A 51 1 18 HELIX 3 3 HIS A 103 LEU A 108 5 6 HELIX 4 4 GLY A 122 CYS A 131 1 10 HELIX 5 5 ALA A 147 ALA A 153 1 7 HELIX 6 6 GLY A 156 THR A 165 1 10 HELIX 7 7 SER A 166 GLY A 177 1 12 HELIX 8 8 ALA A 182 LEU A 188 1 7 HELIX 9 9 THR A 196 GLU A 198 5 3 HELIX 10 10 GLN A 199 CYS A 215 1 17 HELIX 11 11 SER A 216 GLY A 229 1 14 HELIX 12 12 ASP A 230 ARG A 233 5 4 SHEET 1 A 6 VAL A 10 ALA A 14 0 SHEET 2 A 6 VAL A 19 PHE A 24 -1 O ILE A 21 N GLU A 13 SHEET 3 A 6 VAL A 56 GLY A 61 1 O VAL A 58 N ALA A 20 SHEET 4 A 6 VAL A 112 ILE A 116 1 O ALA A 115 N LEU A 59 SHEET 5 A 6 VAL A 133 ALA A 137 1 O PHE A 135 N ILE A 116 SHEET 6 A 6 GLU A 193 VAL A 195 1 O VAL A 195 N ALA A 136 SHEET 1 B 4 CYS A 67 ALA A 68 0 SHEET 2 B 4 CYS A 120 VAL A 121 1 O VAL A 121 N CYS A 67 SHEET 3 B 4 LYS A 141 ALA A 143 1 O LYS A 141 N CYS A 120 SHEET 4 B 4 THR A 179 LEU A 181 -1 O PHE A 180 N PHE A 142 LINK K K A 279 O HOH A 311 1555 1555 3.40 LINK K K A 279 O HOH A 325 1555 1555 2.98 SITE 1 AC1 2 PHE A 146 SER A 219 SITE 1 AC2 1 HOH A 325 CRYST1 87.700 87.700 87.700 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011403 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011403 0.00000