HEADER CELL ADHESION 19-FEB-11 3QS2 TITLE CRYSTAL STRUCTURE OF THE BIOFILM FORMING SUBUNIT OF THE E. COLI COMMON TITLE 2 PILUS: FULL LENGTH DOMAIN SWAPPED DIMER OF ECPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMBRILLIN MATB HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FULL LENGTH PROCESSED ECPA, RSIDUES 23-195; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 199310; SOURCE 4 STRAIN: CFT073; SOURCE 5 GENE: MATB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET46 EK/LIC KEYWDS PILIN, IG-LIKE FOLD, BIOFILMS, ADHESION, IMMUNOGLOBULIN-LIKE FOLD, KEYWDS 2 MAJOR PILIN DOMAIN INVOLVED IN BIOFILMS, INTERMOLECULAR AND KEYWDS 3 HYDROPHOBIC ABIOTIC SURFACE BINDING, EXTRACELLULAR MEMBRANE, CELL KEYWDS 4 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GARNETT,S.J.MATTHEWS REVDAT 4 21-FEB-24 3QS2 1 REMARK SEQADV REVDAT 3 21-MAR-12 3QS2 1 JRNL REVDAT 2 07-MAR-12 3QS2 1 JRNL REVDAT 1 22-FEB-12 3QS2 0 JRNL AUTH J.A.GARNETT,V.I.MARTINEZ-SANTOS,Z.SALDANA,T.PAPE, JRNL AUTH 2 W.HAWTHORNE,J.CHAN,P.J.SIMPSON,E.COTA,J.L.PUENTE,J.A.GIRON, JRNL AUTH 3 S.MATTHEWS JRNL TITL STRUCTURAL INSIGHTS INTO THE BIOGENESIS AND BIOFILM JRNL TITL 2 FORMATION BY THE ESCHERICHIA COLI COMMON PILUS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 3950 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22355107 JRNL DOI 10.1073/PNAS.1106733109 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3576 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2502 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.960 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2630 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3630 ; 1.357 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 5.984 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;40.272 ;26.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;11.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;20.491 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1986 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4178 66.1976 11.5867 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.0378 REMARK 3 T33: 0.0236 T12: 0.0026 REMARK 3 T13: -0.0025 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.4098 L22: 1.5532 REMARK 3 L33: 0.6993 L12: 0.0480 REMARK 3 L13: 0.0031 L23: 0.6186 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.0483 S13: 0.0356 REMARK 3 S21: -0.0580 S22: -0.0389 S23: 0.0179 REMARK 3 S31: -0.0191 S32: -0.0419 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0081 72.6126 13.1023 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0454 REMARK 3 T33: 0.0262 T12: -0.0066 REMARK 3 T13: -0.0020 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.9027 L22: 0.9300 REMARK 3 L33: 0.8192 L12: 0.0255 REMARK 3 L13: -0.0193 L23: -0.3237 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0016 S13: 0.0423 REMARK 3 S21: -0.0124 S22: -0.0319 S23: 0.0157 REMARK 3 S31: -0.0765 S32: 0.0725 S33: 0.0045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3QS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.540 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 60.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.35000 REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 100 MM REMARK 280 PHOSPHATE/CITRATE, 200 MM NAI, PH 3.2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ALA A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 VAL A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 MET A 0 REMARK 465 MET B -14 REMARK 465 ALA B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 VAL B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CD CE NZ REMARK 470 THR A 20 OG1 CG2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 LYS B 22 CD CE NZ REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 LYS B 40 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 69 -60.81 -108.20 REMARK 500 ASN A 71 23.05 -154.92 REMARK 500 ASP A 77 -151.84 -92.64 REMARK 500 ASP A 77 -152.34 -92.64 REMARK 500 ASN A 125 -163.18 -119.95 REMARK 500 ASN A 143 10.62 -155.34 REMARK 500 ILE B 69 -61.15 -106.12 REMARK 500 ASN B 71 16.98 -156.31 REMARK 500 ASP B 77 -156.58 -103.44 REMARK 500 ASP B 104 88.20 -156.08 REMARK 500 SER B 124 40.95 -99.08 REMARK 500 ASN B 143 12.54 -156.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QS3 RELATED DB: PDB REMARK 900 DONOR STRAND COMPLEMENTED (DSC) ECPA DBREF 3QS2 A 1 173 UNP Q8CWB9 MATB_ECOL6 23 195 DBREF 3QS2 B 1 173 UNP Q8CWB9 MATB_ECOL6 23 195 SEQADV 3QS2 MET A -14 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ALA A -13 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS A -12 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS A -11 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS A -10 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS A -9 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS A -8 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS A -7 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 VAL A -6 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ASP A -5 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ASP A -4 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ASP A -3 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ASP A -2 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 LYS A -1 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 MET A 0 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 MET B -14 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ALA B -13 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS B -12 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS B -11 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS B -10 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS B -9 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS B -8 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 HIS B -7 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 VAL B -6 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ASP B -5 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ASP B -4 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ASP B -3 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 ASP B -2 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 LYS B -1 UNP Q8CWB9 EXPRESSION TAG SEQADV 3QS2 MET B 0 UNP Q8CWB9 EXPRESSION TAG SEQRES 1 A 188 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 188 LYS MET ALA ASP VAL THR ALA GLN ALA VAL ALA THR TRP SEQRES 3 A 188 SER ALA THR ALA LYS LYS ASP THR THR SER LYS LEU VAL SEQRES 4 A 188 VAL THR PRO LEU GLY SER LEU ALA PHE GLN TYR ALA GLU SEQRES 5 A 188 GLY ILE LYS GLY PHE ASN SER GLN LYS GLY LEU PHE ASP SEQRES 6 A 188 VAL ALA ILE GLU GLY ASP SER THR ALA THR ALA PHE LYS SEQRES 7 A 188 LEU THR SER ARG LEU ILE THR ASN THR LEU THR GLN LEU SEQRES 8 A 188 ASP THR SER GLY SER THR LEU ASN VAL GLY VAL ASP TYR SEQRES 9 A 188 ASN GLY THR ALA VAL GLU LYS THR GLY ASP THR VAL MET SEQRES 10 A 188 ILE ASP THR ALA ASN GLY VAL LEU GLY GLY ASN LEU SER SEQRES 11 A 188 PRO LEU ALA ASN GLY TYR ASN ALA SER ASN ARG THR THR SEQRES 12 A 188 ALA GLN ASP GLY PHE THR PHE SER ILE ILE SER GLY THR SEQRES 13 A 188 THR ASN GLY THR THR ALA VAL THR ASP TYR SER THR LEU SEQRES 14 A 188 PRO GLU GLY ILE TRP SER GLY ASP VAL SER VAL GLN PHE SEQRES 15 A 188 ASP ALA THR TRP THR SER SEQRES 1 B 188 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 188 LYS MET ALA ASP VAL THR ALA GLN ALA VAL ALA THR TRP SEQRES 3 B 188 SER ALA THR ALA LYS LYS ASP THR THR SER LYS LEU VAL SEQRES 4 B 188 VAL THR PRO LEU GLY SER LEU ALA PHE GLN TYR ALA GLU SEQRES 5 B 188 GLY ILE LYS GLY PHE ASN SER GLN LYS GLY LEU PHE ASP SEQRES 6 B 188 VAL ALA ILE GLU GLY ASP SER THR ALA THR ALA PHE LYS SEQRES 7 B 188 LEU THR SER ARG LEU ILE THR ASN THR LEU THR GLN LEU SEQRES 8 B 188 ASP THR SER GLY SER THR LEU ASN VAL GLY VAL ASP TYR SEQRES 9 B 188 ASN GLY THR ALA VAL GLU LYS THR GLY ASP THR VAL MET SEQRES 10 B 188 ILE ASP THR ALA ASN GLY VAL LEU GLY GLY ASN LEU SER SEQRES 11 B 188 PRO LEU ALA ASN GLY TYR ASN ALA SER ASN ARG THR THR SEQRES 12 B 188 ALA GLN ASP GLY PHE THR PHE SER ILE ILE SER GLY THR SEQRES 13 B 188 THR ASN GLY THR THR ALA VAL THR ASP TYR SER THR LEU SEQRES 14 B 188 PRO GLU GLY ILE TRP SER GLY ASP VAL SER VAL GLN PHE SEQRES 15 B 188 ASP ALA THR TRP THR SER HET IOD A 201 2 HET IOD A 202 3 HET IOD A 203 2 HET IOD A 204 1 HET IOD A 205 1 HET IOD A 206 2 HET IOD A 207 1 HET IOD A 208 1 HET IOD A 209 1 HET IOD A 210 1 HET IOD A 211 1 HET IOD B 203 2 HET IOD B 201 1 HET IOD B 204 3 HET IOD B 202 1 HET IOD B 205 3 HET IOD B 206 1 HET IOD B 207 1 HET IOD B 208 1 HET IOD B 209 1 HET IOD B 210 1 HETNAM IOD IODIDE ION FORMUL 3 IOD 21(I 1-) FORMUL 24 HOH *460(H2 O) HELIX 1 1 ALA A 106 GLY A 108 5 3 HELIX 2 2 GLY A 111 ASN A 113 5 3 HELIX 3 3 LEU A 114 TYR A 121 1 8 HELIX 4 4 ASP A 150 LEU A 154 5 5 HELIX 5 5 ALA B 106 GLY B 108 5 3 HELIX 6 6 GLY B 111 ASN B 113 5 3 HELIX 7 7 LEU B 114 TYR B 121 1 8 HELIX 8 8 ASP B 150 LEU B 154 5 5 SHEET 1 A 9 GLY A 41 PHE A 42 0 SHEET 2 A 9 LEU A 31 ALA A 36 -1 N ALA A 36 O GLY A 41 SHEET 3 A 9 VAL A 3 LYS A 17 1 N THR A 14 O PHE A 33 SHEET 4 A 9 GLY A 157 THR A 172 -1 O PHE A 167 N ALA A 7 SHEET 5 A 9 THR A 72 GLN A 75 -1 N THR A 74 O SER A 160 SHEET 6 A 9 THR A 82 TYR A 89 -1 O LEU A 83 N LEU A 73 SHEET 7 A 9 ARG A 126 THR A 141 -1 O SER A 136 N GLY A 86 SHEET 8 A 9 GLN A 45 GLU A 54 -1 N GLN A 45 O PHE A 135 SHEET 9 A 9 LEU B 23 PRO B 27 -1 O VAL B 24 N ALA A 52 SHEET 1 B 3 GLY A 157 THR A 172 0 SHEET 2 B 3 ALA A 61 THR A 70 -1 N ARG A 67 O GLN A 166 SHEET 3 B 3 THR A 100 ASP A 104 -1 O MET A 102 N LEU A 64 SHEET 1 C 2 THR A 82 TYR A 89 0 SHEET 2 C 2 THR A 92 VAL A 94 -1 O THR A 92 N TYR A 89 SHEET 1 D 2 ARG A 126 THR A 141 0 SHEET 2 D 2 ALA A 147 VAL A 148 -1 O VAL A 148 N GLY A 140 SHEET 1 E 7 LEU A 23 PRO A 27 0 SHEET 2 E 7 GLN B 45 GLU B 54 -1 O ASP B 50 N THR A 26 SHEET 3 E 7 ARG B 126 THR B 141 -1 O PHE B 135 N GLN B 45 SHEET 4 E 7 THR B 82 TYR B 89 -1 N GLY B 86 O SER B 136 SHEET 5 E 7 THR B 72 GLN B 75 -1 N LEU B 73 O LEU B 83 SHEET 6 E 7 GLY B 157 THR B 172 -1 O SER B 160 N THR B 74 SHEET 7 E 7 THR B 92 VAL B 94 0 SHEET 1 F 8 GLY B 41 PHE B 42 0 SHEET 2 F 8 LEU B 31 ALA B 36 -1 N ALA B 36 O GLY B 41 SHEET 3 F 8 VAL B 3 LYS B 17 1 N LYS B 16 O TYR B 35 SHEET 4 F 8 GLY B 157 THR B 172 -1 O TRP B 171 N VAL B 3 SHEET 5 F 8 THR B 72 GLN B 75 -1 N THR B 74 O SER B 160 SHEET 6 F 8 THR B 82 TYR B 89 -1 O LEU B 83 N LEU B 73 SHEET 7 F 8 ALA B 61 THR B 70 0 SHEET 8 F 8 THR B 100 ASP B 104 -1 O THR B 100 N SER B 66 SITE 1 AC1 4 LEU A 76 ASP A 77 ILE A 158 THR B 78 SITE 1 AC2 4 LYS A 96 ILE A 138 IOD A 209 HOH A 331 SITE 1 AC3 2 HOH A 373 HOH B 438 SITE 1 AC4 1 ASN B 113 SITE 1 AC5 1 THR A 149 SITE 1 AC6 1 GLY A 38 SITE 1 AC7 1 ARG A 126 SITE 1 AC8 2 SER A 21 GLU B 54 SITE 1 AC9 4 ASN A 71 IOD A 202 HOH A 381 HOH A 383 SITE 1 BC1 3 ASP A 104 HOH A 417 HOH A 466 SITE 1 BC2 1 HOH A 468 SITE 1 BC3 1 SER B 44 SITE 1 BC4 3 GLU B 54 ASN B 125 ARG B 126 SITE 1 BC5 4 THR A 78 ASP B 77 ILE B 158 HOH B 485 SITE 1 BC6 2 LYS B 96 IOD B 207 SITE 1 BC7 2 VAL B 8 HOH B 461 SITE 1 BC8 2 GLU A 54 HOH B 490 SITE 1 BC9 5 ASN B 71 ASN B 84 IOD B 204 HOH B 334 SITE 2 BC9 5 HOH B 437 SITE 1 CC1 1 GLN B 6 SITE 1 CC2 1 SER B 124 SITE 1 CC3 3 VAL B 148 THR B 149 ASP B 150 CRYST1 46.860 72.080 108.320 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009232 0.00000