HEADER TRANSLATION/RNA 22-FEB-11 3QSY TITLE RECOGNITION OF THE METHIONYLATED INITIATOR TRNA BY THE TRANSLATION TITLE 2 INITIATION FACTOR 2 IN ARCHAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AIF2-GAMMA, EIF-2-GAMMA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSLATION INITIATION FACTOR 2 SUBUNIT ALPHA; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: DOMAIN 3; COMPND 10 SYNONYM: AIF2-ALPHA, EIF-2-ALPHA; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRNA; COMPND 14 CHAIN: D; COMPND 15 OTHER_DETAILS: MET-TRNAI FROM ESCHERICHIA COLI(UNMODIFIED BASES) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: EIF2G; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 9 ORGANISM_TAXID: 2287; SOURCE 10 GENE: EIF2A; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562 KEYWDS TRANSLATION INITIATION, ARCHAEA, E/AIF2, TRNAI, G-PROTEIN, GTP KEYWDS 2 BINDING, MET-TRNAI BINDING, RIBOSOME BINDING, MRNA BINDING, KEYWDS 3 RIBOSOME, TRANSLATION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.S.NIKONOV,E.A.STOLBOUSHKINA,N.V.ZELINSKAYA,A.D.NIKULIN,M.B.GARBER, AUTHOR 2 S.V.NIKONOV REVDAT 4 01-NOV-23 3QSY 1 REMARK LINK REVDAT 3 19-JUN-13 3QSY 1 JRNL REVDAT 2 06-FEB-13 3QSY 1 JRNL REVDAT 1 21-MAR-12 3QSY 0 JRNL AUTH E.STOLBOUSHKINA,S.NIKONOV,N.ZELINSKAYA,V.ARKHIPOVA, JRNL AUTH 2 A.NIKULIN,M.GARBER,O.NIKONOV JRNL TITL CRYSTAL STRUCTURE OF THE ARCHAEAL TRANSLATION INITIATION JRNL TITL 2 FACTOR 2 IN COMPLEX WITH A GTP ANALOGUE AND MET-TRNAF(MET.) JRNL REF J.MOL.BIOL. V. 425 989 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23291527 JRNL DOI 10.1016/J.JMB.2012.12.023 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 17676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.279 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.320 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.8092 - 6.0034 0.93 2651 134 0.2585 0.2789 REMARK 3 2 6.0034 - 4.8190 0.93 2539 121 0.2968 0.3015 REMARK 3 3 4.8190 - 4.2260 0.90 2415 139 0.2899 0.3131 REMARK 3 4 4.2260 - 3.8470 0.87 2326 147 0.2842 0.3009 REMARK 3 5 3.8470 - 3.5755 0.86 2278 115 0.2769 0.3149 REMARK 3 6 3.5755 - 3.3673 0.86 2284 133 0.2576 0.3222 REMARK 3 7 3.3673 - 3.2004 0.85 2251 130 0.3024 0.3455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.14 REMARK 3 B_SOL : 128.1 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 129.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -54.43180 REMARK 3 B22 (A**2) : -54.43180 REMARK 3 B33 (A**2) : 108.86360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5861 REMARK 3 ANGLE : 1.307 8298 REMARK 3 CHIRALITY : 0.087 1025 REMARK 3 PLANARITY : 0.006 759 REMARK 3 DIHEDRAL : 19.968 2449 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0436 -16.7647 10.0304 REMARK 3 T TENSOR REMARK 3 T11: -0.0090 T22: 0.0005 REMARK 3 T33: 0.0404 T12: -0.1728 REMARK 3 T13: -0.1463 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 0.0293 L22: 0.0165 REMARK 3 L33: 0.0478 L12: 0.0060 REMARK 3 L13: 0.0031 L23: -0.0348 REMARK 3 S TENSOR REMARK 3 S11: 0.1302 S12: 0.0175 S13: -0.0420 REMARK 3 S21: -0.0688 S22: -0.0396 S23: 0.0079 REMARK 3 S31: 0.0242 S32: 0.0606 S33: 0.1191 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 82:127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9517 -7.5186 19.5164 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.1696 REMARK 3 T33: 0.1728 T12: 0.0203 REMARK 3 T13: -0.0469 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 0.0300 L22: 0.0171 REMARK 3 L33: 0.0433 L12: -0.0009 REMARK 3 L13: -0.0290 L23: 0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0741 S12: 0.0687 S13: 0.0058 REMARK 3 S21: -0.0395 S22: -0.1403 S23: 0.0328 REMARK 3 S31: 0.0026 S32: 0.0550 S33: -0.0240 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 128:198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3892 -14.5172 26.6980 REMARK 3 T TENSOR REMARK 3 T11: 0.0380 T22: 0.0166 REMARK 3 T33: 0.2038 T12: 0.0252 REMARK 3 T13: -0.1009 T23: 0.1189 REMARK 3 L TENSOR REMARK 3 L11: 0.1084 L22: 0.0327 REMARK 3 L33: 0.0244 L12: -0.0499 REMARK 3 L13: -0.0002 L23: 0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: -0.0241 S13: -0.0128 REMARK 3 S21: -0.0011 S22: -0.0138 S23: 0.0216 REMARK 3 S31: -0.0390 S32: 0.0369 S33: -0.0225 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 199:238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8759 10.5707 15.3915 REMARK 3 T TENSOR REMARK 3 T11: 0.3127 T22: 0.1748 REMARK 3 T33: 0.2431 T12: -0.2930 REMARK 3 T13: 0.0820 T23: 0.1034 REMARK 3 L TENSOR REMARK 3 L11: 0.0241 L22: 0.0145 REMARK 3 L33: 0.0639 L12: 0.0246 REMARK 3 L13: 0.0276 L23: 0.0136 REMARK 3 S TENSOR REMARK 3 S11: 0.0929 S12: -0.0279 S13: 0.0059 REMARK 3 S21: 0.0126 S22: 0.0541 S23: 0.0673 REMARK 3 S31: -0.1179 S32: 0.0440 S33: 0.0580 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 239:278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1419 22.8714 18.9469 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: -0.0232 REMARK 3 T33: 0.0542 T12: 0.1760 REMARK 3 T13: 0.0690 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: -0.0023 L22: 0.0282 REMARK 3 L33: 0.0249 L12: 0.0054 REMARK 3 L13: -0.0024 L23: 0.0111 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.0282 S13: 0.0183 REMARK 3 S21: -0.0314 S22: 0.0769 S23: 0.0068 REMARK 3 S31: -0.0036 S32: -0.0027 S33: 0.0748 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 279:338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0596 16.3792 22.2211 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.2053 REMARK 3 T33: 0.0869 T12: -0.0187 REMARK 3 T13: -0.0364 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.0080 L22: 0.0524 REMARK 3 L33: 0.0669 L12: -0.0224 REMARK 3 L13: -0.0321 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: 0.0321 S13: -0.0011 REMARK 3 S21: -0.0898 S22: -0.0017 S23: -0.0045 REMARK 3 S31: -0.0922 S32: -0.0271 S33: 0.0666 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 339:415 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4432 14.4362 38.1217 REMARK 3 T TENSOR REMARK 3 T11: -0.0077 T22: 0.1549 REMARK 3 T33: 0.0111 T12: 0.0310 REMARK 3 T13: -0.2480 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 0.0323 L22: 0.0185 REMARK 3 L33: 0.0288 L12: -0.0040 REMARK 3 L13: -0.0107 L23: 0.0333 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.0691 S13: -0.0263 REMARK 3 S21: 0.0919 S22: 0.1712 S23: -0.0203 REMARK 3 S31: 0.1066 S32: 0.0551 S33: 0.1359 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 176:190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2522 33.9531 24.1529 REMARK 3 T TENSOR REMARK 3 T11: 0.2720 T22: 0.1263 REMARK 3 T33: 0.2924 T12: -0.0121 REMARK 3 T13: -0.0781 T23: -0.0990 REMARK 3 L TENSOR REMARK 3 L11: 0.0717 L22: 0.1354 REMARK 3 L33: 0.1737 L12: 0.0752 REMARK 3 L13: -0.0908 L23: -0.0328 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.0017 S13: -0.0174 REMARK 3 S21: -0.0308 S22: 0.0622 S23: -0.0323 REMARK 3 S31: -0.0559 S32: -0.0175 S33: 0.0884 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 191:207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0862 33.2954 8.9373 REMARK 3 T TENSOR REMARK 3 T11: 0.4879 T22: 0.5143 REMARK 3 T33: 0.4173 T12: -0.0257 REMARK 3 T13: -0.0547 T23: -0.1835 REMARK 3 L TENSOR REMARK 3 L11: 0.0004 L22: -0.0001 REMARK 3 L33: 0.0018 L12: 0.0014 REMARK 3 L13: 0.0009 L23: -0.0007 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0082 S13: 0.0011 REMARK 3 S21: -0.0046 S22: -0.0172 S23: 0.0002 REMARK 3 S31: -0.0331 S32: 0.0054 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 208:231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8820 29.9301 20.3065 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1500 REMARK 3 T33: 0.0723 T12: -0.0005 REMARK 3 T13: 0.0035 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.0106 L22: 0.0604 REMARK 3 L33: 0.0449 L12: 0.0257 REMARK 3 L13: 0.0087 L23: 0.0161 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: -0.0893 S13: 0.0025 REMARK 3 S21: 0.0502 S22: -0.0520 S23: 0.0092 REMARK 3 S31: 0.0258 S32: -0.0973 S33: -0.0232 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 232:237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.4050 32.6338 21.5625 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.1123 REMARK 3 T33: 0.0998 T12: 0.0008 REMARK 3 T13: -0.0149 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.0023 L22: 0.0157 REMARK 3 L33: 0.0002 L12: 0.0057 REMARK 3 L13: -0.0000 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0087 S13: 0.0110 REMARK 3 S21: 0.0081 S22: 0.0057 S23: 0.0007 REMARK 3 S31: -0.0175 S32: -0.0059 S33: 0.0060 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 238:264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7532 41.0949 19.7819 REMARK 3 T TENSOR REMARK 3 T11: 0.2749 T22: 0.0550 REMARK 3 T33: 0.1787 T12: 0.0400 REMARK 3 T13: 0.0566 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 0.0309 L22: 0.0177 REMARK 3 L33: 0.0161 L12: -0.0065 REMARK 3 L13: 0.0161 L23: -0.0136 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.0121 S13: -0.0164 REMARK 3 S21: 0.0467 S22: 0.0365 S23: 0.0055 REMARK 3 S31: -0.0049 S32: 0.0170 S33: 0.0246 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4252 20.7213 42.4956 REMARK 3 T TENSOR REMARK 3 T11: 0.2820 T22: 0.2481 REMARK 3 T33: 0.6187 T12: 0.0162 REMARK 3 T13: -0.1532 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.0317 L22: 0.0054 REMARK 3 L33: 0.1906 L12: 0.0205 REMARK 3 L13: 0.0096 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.1054 S12: 0.0178 S13: 0.0379 REMARK 3 S21: 0.0104 S22: 0.0203 S23: -0.0121 REMARK 3 S31: -0.1129 S32: 0.0505 S33: -0.0266 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN D AND RESID 25:34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9130 15.8261 68.7667 REMARK 3 T TENSOR REMARK 3 T11: 0.4507 T22: 0.2369 REMARK 3 T33: 0.3184 T12: 0.0228 REMARK 3 T13: -0.0783 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 0.0007 L22: -0.0007 REMARK 3 L33: 0.0003 L12: -0.0008 REMARK 3 L13: -0.0007 L23: -0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: -0.0145 S13: 0.0006 REMARK 3 S21: 0.0926 S22: 0.0332 S23: 0.0129 REMARK 3 S31: -0.0089 S32: -0.0031 S33: 0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN D AND RESID 35:44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5293 18.6507 63.2442 REMARK 3 T TENSOR REMARK 3 T11: 0.7496 T22: 0.7304 REMARK 3 T33: 0.6080 T12: -0.0341 REMARK 3 T13: -0.1158 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: -0.0002 REMARK 3 L33: -0.0003 L12: -0.0002 REMARK 3 L13: 0.0005 L23: -0.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0087 S13: -0.0132 REMARK 3 S21: 0.0268 S22: 0.0182 S23: 0.0039 REMARK 3 S31: -0.0351 S32: -0.0153 S33: -0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: ( CHAIN D AND RESID 45:69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.3023 19.7345 46.9014 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.1686 REMARK 3 T33: 0.3333 T12: 0.0618 REMARK 3 T13: 0.0535 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 0.0626 L22: 0.0356 REMARK 3 L33: 0.0876 L12: 0.0291 REMARK 3 L13: 0.0156 L23: 0.0411 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: -0.0990 S13: 0.0455 REMARK 3 S21: 0.0735 S22: 0.0279 S23: -0.0168 REMARK 3 S31: 0.0860 S32: -0.0511 S33: -0.0252 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: ( CHAIN D AND RESID 70:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6905 4.0605 33.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.2243 T22: 0.1579 REMARK 3 T33: 0.1232 T12: -0.0059 REMARK 3 T13: 0.1063 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0004 L22: 0.0624 REMARK 3 L33: 0.0796 L12: 0.0025 REMARK 3 L13: 0.0063 L23: -0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -0.0175 S13: 0.0179 REMARK 3 S21: -0.0584 S22: -0.0747 S23: -0.0505 REMARK 3 S31: -0.0621 S32: 0.0009 S33: -0.0846 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 198.3 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23068 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2AHO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% AMMONIUM SULPHATE, 30MM TRIS-HCL, REMARK 280 5MM MES, 7MM MGCL2, 0.5MM DTT, 0.2MM GDPNP, 300MM NDSB 195, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.34333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.68667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.68667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.34333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 3 55.90 -142.44 REMARK 500 VAL A 10 74.98 60.49 REMARK 500 LYS A 22 -61.27 -91.96 REMARK 500 THR A 30 -73.98 -132.41 REMARK 500 ILE A 32 -81.21 -111.75 REMARK 500 TRP A 33 -63.14 -136.05 REMARK 500 SER A 35 -155.26 47.74 REMARK 500 LYS A 36 59.34 28.28 REMARK 500 SER A 38 -129.12 56.12 REMARK 500 GLU A 40 -136.75 46.18 REMARK 500 ILE A 47 169.71 176.67 REMARK 500 LYS A 48 70.74 58.95 REMARK 500 LEU A 49 -70.12 -46.36 REMARK 500 ALA A 52 -124.53 66.85 REMARK 500 GLU A 60 -64.35 -100.52 REMARK 500 SER A 73 -144.03 51.58 REMARK 500 ASP A 80 -60.39 -130.79 REMARK 500 LEU A 86 -62.35 -97.49 REMARK 500 HIS A 97 -169.21 -161.64 REMARK 500 ALA A 120 -62.18 -133.18 REMARK 500 ALA A 135 -65.71 -90.68 REMARK 500 ASP A 152 -76.55 -104.68 REMARK 500 LYS A 171 -16.46 73.86 REMARK 500 ALA A 175 81.27 66.21 REMARK 500 GLU A 176 -173.46 -65.21 REMARK 500 LYS A 188 -10.71 68.20 REMARK 500 SER A 210 71.93 65.65 REMARK 500 LYS A 212 74.96 -118.20 REMARK 500 THR A 228 -72.99 -58.50 REMARK 500 ILE A 243 -73.98 -113.16 REMARK 500 PHE A 247 -71.66 -131.23 REMARK 500 GLN A 251 -76.48 -122.89 REMARK 500 GLU A 262 -109.98 53.19 REMARK 500 LYS A 263 77.51 67.63 REMARK 500 GLN A 264 -136.12 65.01 REMARK 500 SER A 278 -78.16 -125.46 REMARK 500 ILE A 279 73.62 58.10 REMARK 500 PRO A 291 -168.36 -68.12 REMARK 500 PRO A 303 63.82 -64.88 REMARK 500 SER A 304 -64.14 -134.25 REMARK 500 LYS A 307 73.53 51.27 REMARK 500 ALA A 319 -148.57 53.15 REMARK 500 ASP A 320 166.50 171.74 REMARK 500 GLU A 322 -6.28 87.04 REMARK 500 ASN A 334 -59.32 -131.89 REMARK 500 LEU A 335 -136.89 64.09 REMARK 500 ALA A 342 -170.71 -69.48 REMARK 500 PRO A 350 -168.60 -72.46 REMARK 500 THR A 371 -64.01 -131.34 REMARK 500 LYS A 375 -121.32 69.98 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET D 77 DBREF 3QSY A 1 415 UNP Q980A5 IF2G_SULSO 1 415 DBREF 3QSY B 176 264 UNP Q97Z79 IF2A_SULSO 176 264 DBREF 3QSY D 1 76 GB 312135 X70452 1 77 SEQRES 1 A 415 MET ALA TRP PRO LYS VAL GLN PRO GLU VAL ASN ILE GLY SEQRES 2 A 415 VAL VAL GLY HIS VAL ASP HIS GLY LYS THR THR LEU VAL SEQRES 3 A 415 GLN ALA ILE THR GLY ILE TRP THR SER LYS HIS SER GLU SEQRES 4 A 415 GLU LEU LYS ARG GLY MET THR ILE LYS LEU GLY TYR ALA SEQRES 5 A 415 GLU THR ASN ILE GLY VAL CYS GLU SER CYS LYS LYS PRO SEQRES 6 A 415 GLU ALA TYR VAL THR GLU PRO SER CYS LYS SER CYS GLY SEQRES 7 A 415 SER ASP ASP GLU PRO LYS PHE LEU ARG ARG ILE SER PHE SEQRES 8 A 415 ILE ASP ALA PRO GLY HIS GLU VAL LEU MET ALA THR MET SEQRES 9 A 415 LEU SER GLY ALA ALA LEU MET ASP GLY ALA ILE LEU VAL SEQRES 10 A 415 VAL ALA ALA ASN GLU PRO PHE PRO GLN PRO GLN THR ARG SEQRES 11 A 415 GLU HIS PHE VAL ALA LEU GLY ILE ILE GLY VAL LYS ASN SEQRES 12 A 415 LEU ILE ILE VAL GLN ASN LYS VAL ASP VAL VAL SER LYS SEQRES 13 A 415 GLU GLU ALA LEU SER GLN TYR ARG GLN ILE LYS GLN PHE SEQRES 14 A 415 THR LYS GLY THR TRP ALA GLU ASN VAL PRO ILE ILE PRO SEQRES 15 A 415 VAL SER ALA LEU HIS LYS ILE ASN ILE ASP SER LEU ILE SEQRES 16 A 415 GLU GLY ILE GLU GLU TYR ILE LYS THR PRO TYR ARG ASP SEQRES 17 A 415 LEU SER GLN LYS PRO VAL MET LEU VAL ILE ARG SER PHE SEQRES 18 A 415 ASP VAL ASN LYS PRO GLY THR GLN PHE ASN GLU LEU LYS SEQRES 19 A 415 GLY GLY VAL ILE GLY GLY SER ILE ILE GLN GLY LEU PHE SEQRES 20 A 415 LYS VAL ASP GLN GLU ILE LYS VAL LEU PRO GLY LEU ARG SEQRES 21 A 415 VAL GLU LYS GLN GLY LYS VAL SER TYR GLU PRO ILE PHE SEQRES 22 A 415 THR LYS ILE SER SER ILE ARG PHE GLY ASP GLU GLU PHE SEQRES 23 A 415 LYS GLU ALA LYS PRO GLY GLY LEU VAL ALA ILE GLY THR SEQRES 24 A 415 TYR LEU ASP PRO SER LEU THR LYS ALA ASP ASN LEU LEU SEQRES 25 A 415 GLY SER ILE ILE THR LEU ALA ASP ALA GLU VAL PRO VAL SEQRES 26 A 415 LEU TRP ASN ILE ARG ILE LYS TYR ASN LEU LEU GLU ARG SEQRES 27 A 415 VAL VAL GLY ALA LYS GLU MET LEU LYS VAL ASP PRO ILE SEQRES 28 A 415 ARG ALA LYS GLU THR LEU MET LEU SER VAL GLY SER SER SEQRES 29 A 415 THR THR LEU GLY ILE VAL THR SER VAL LYS LYS ASP GLU SEQRES 30 A 415 ILE GLU VAL GLU LEU ARG ARG PRO VAL ALA VAL TRP SER SEQRES 31 A 415 ASN ASN ILE ARG THR VAL ILE SER ARG GLN ILE ALA GLY SEQRES 32 A 415 ARG TRP ARG MET ILE GLY TRP GLY LEU VAL GLU ILE SEQRES 1 B 89 LYS VAL LYS MET SER GLY LEU ILE THR VAL ARG THR ASN SEQRES 2 B 89 GLU PRO LEU GLY VAL GLU LYS ILE LYS GLU VAL ILE SER SEQRES 3 B 89 LYS ALA LEU GLU ASN ILE GLU GLN ASP TYR GLU SER LEU SEQRES 4 B 89 LEU ASN ILE LYS ILE TYR THR ILE GLY ALA PRO ARG TYR SEQRES 5 B 89 ARG VAL ASP VAL VAL GLY THR ASN PRO LYS GLU ALA SER SEQRES 6 B 89 GLU ALA LEU ASN GLN ILE ILE SER ASN LEU ILE LYS ILE SEQRES 7 B 89 GLY LYS GLU GLU ASN VAL ASP ILE SER VAL VAL SEQRES 1 D 77 C G C G G G G U G G A G C SEQRES 2 D 77 A G C C U G G U A G C U C SEQRES 3 D 77 G U C G G G C U C A U A A SEQRES 4 D 77 C C C G A A G A U C G U C SEQRES 5 D 77 G G U U C A A A U C C G G SEQRES 6 D 77 C C C C C G C A A C C A HET GNP A 501 32 HET MET D 77 8 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MET METHIONINE FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MET C5 H11 N O2 S HELIX 1 1 LYS A 22 GLN A 27 1 6 HELIX 2 2 ALA A 102 ALA A 108 1 7 HELIX 3 3 GLN A 126 GLY A 137 1 12 HELIX 4 4 GLU A 157 THR A 170 1 14 HELIX 5 5 ILE A 191 GLU A 199 1 9 HELIX 6 6 LEU B 191 ALA B 203 1 13 HELIX 7 7 ILE B 207 TYR B 211 5 5 HELIX 8 8 LYS B 237 ASN B 258 1 22 SHEET 1 A 2 ILE A 12 VAL A 14 0 SHEET 2 A 2 PHE A 91 ASP A 93 1 O ILE A 92 N VAL A 14 SHEET 1 B 2 GLY A 57 VAL A 58 0 SHEET 2 B 2 LYS A 84 PHE A 85 -1 O LYS A 84 N VAL A 58 SHEET 1 C 3 VAL A 117 VAL A 118 0 SHEET 2 C 3 VAL A 147 GLN A 148 1 N VAL A 147 O VAL A 118 SHEET 3 C 3 ILE A 181 PRO A 182 1 O ILE A 181 N GLN A 148 SHEET 1 D 2 LYS A 254 LEU A 259 0 SHEET 2 D 2 GLU A 270 PHE A 273 -1 O GLU A 270 N LEU A 259 SHEET 1 E 7 ARG A 330 TYR A 333 0 SHEET 2 E 7 GLU A 377 LEU A 382 -1 O ILE A 378 N ILE A 331 SHEET 3 E 7 THR A 366 VAL A 373 -1 N THR A 371 O GLU A 379 SHEET 4 E 7 THR A 356 SER A 360 -1 N LEU A 359 O THR A 366 SHEET 5 E 7 THR A 395 ILE A 401 -1 O VAL A 396 N SER A 360 SHEET 6 E 7 ARG A 404 VAL A 413 -1 O GLY A 411 N THR A 395 SHEET 7 E 7 ARG A 330 TYR A 333 -1 N LYS A 332 O LEU A 412 SHEET 1 F 3 LEU B 182 THR B 184 0 SHEET 2 F 3 ARG B 226 GLY B 233 -1 O TYR B 227 N ILE B 183 SHEET 3 F 3 LEU B 214 THR B 221 -1 N LEU B 215 O VAL B 232 SHEET 1 G 2 ARG B 186 THR B 187 0 SHEET 2 G 2 VAL B 259 ASP B 260 -1 O ASP B 260 N ARG B 186 SSBOND 1 CYS A 59 CYS A 74 1555 1555 2.04 SSBOND 2 CYS A 62 CYS A 77 1555 1555 2.03 LINK O3' A D 76 C MET D 77 1555 1555 1.34 CISPEP 1 LEU A 256 PRO A 257 0 -4.68 SITE 1 AC1 8 VAL A 18 ASP A 19 HIS A 20 GLY A 21 SITE 2 AC1 8 LYS A 22 THR A 23 ASN A 121 LYS A 150 SITE 1 AC2 2 ARG A 130 A D 76 CRYST1 93.680 93.680 220.030 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010675 0.006163 0.000000 0.00000 SCALE2 0.000000 0.012326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004545 0.00000