HEADER TRANSFERASE 22-FEB-11 3QTG TITLE CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM PYROBACULUM AEROPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PK; COMPND 5 EC: 2.7.1.40; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 178306; SOURCE 4 STRAIN: ATCC 51768, IM2; SOURCE 5 GENE: PAE0819, PYK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS TIM BARREL, KINASE; GLYCOLYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DAVIES,J.T.G.SOLOMONS REVDAT 3 13-SEP-23 3QTG 1 REMARK REVDAT 2 08-NOV-17 3QTG 1 REMARK REVDAT 1 22-FEB-12 3QTG 0 JRNL AUTH J.T.G.SOLOMONS,U.JOHNSON,P.SCHOENHEIT,C.DAVIES JRNL TITL THE CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM THE JRNL TITL 2 HYPERTHERMOPHILIC ARCHAEON PYROBACULUM AEROPHILUM: INSIGHTS JRNL TITL 3 INTO COOPERATIVE REGULATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 60943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3110 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6701 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.636 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6852 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9308 ; 1.370 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 868 ; 5.977 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 278 ;38.790 ;23.921 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1212 ;15.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;15.921 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1109 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5043 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2828 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4662 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 291 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4472 ; 0.830 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7054 ; 1.371 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2679 ; 2.089 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2254 ; 3.264 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60944 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1PKL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 1500, 100MM TRIS PH 8.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.15000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.52822 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 98.35058 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 6 REMARK 465 ASP A 7 REMARK 465 HIS A 8 REMARK 465 ALA A 9 REMARK 465 ILE A 10 REMARK 465 LEU A 11 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 ARG B 5 REMARK 465 GLY B 6 REMARK 465 ASP B 7 REMARK 465 HIS B 8 REMARK 465 ALA B 9 REMARK 465 ILE B 10 REMARK 465 LEU B 11 REMARK 465 ARG B 12 REMARK 465 ALA B 13 REMARK 465 ARG B 14 REMARK 465 VAL B 88 REMARK 465 GLY B 89 REMARK 465 SER B 90 REMARK 465 THR B 91 REMARK 465 SER B 92 REMARK 465 PRO B 93 REMARK 465 ILE B 94 REMARK 465 ASN B 95 REMARK 465 SER B 107 REMARK 465 ASP B 108 REMARK 465 LYS B 109 REMARK 465 SER B 110 REMARK 465 ASP B 111 REMARK 465 GLY B 112 REMARK 465 THR B 113 REMARK 465 TYR B 114 REMARK 465 ILE B 115 REMARK 465 PRO B 116 REMARK 465 GLU B 156 REMARK 465 SER B 157 REMARK 465 SER B 158 REMARK 465 GLY B 159 REMARK 465 VAL B 160 REMARK 465 ILE B 161 REMARK 465 THR B 162 REMARK 465 GLY B 163 REMARK 465 GLY B 164 REMARK 465 LYS B 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 SO4 B 501 O HOH B 518 1.88 REMARK 500 O3 SO4 B 500 O HOH B 517 1.92 REMARK 500 OG SER B 381 O2 SO4 B 500 2.00 REMARK 500 O4 SO4 B 500 O HOH B 467 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR B 146 CB THR B 146 OG1 -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 141 CA - CB - CG ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 107 147.11 -176.45 REMARK 500 PRO A 118 39.65 -81.00 REMARK 500 ASN A 129 -0.35 78.82 REMARK 500 SER A 148 -82.09 -57.49 REMARK 500 THR A 288 146.13 76.36 REMARK 500 THR A 322 -95.64 -114.17 REMARK 500 ILE A 349 105.25 -19.52 REMARK 500 TRP A 416 122.64 -36.44 REMARK 500 ALA A 417 -12.63 71.11 REMARK 500 ASN B 129 -6.86 72.87 REMARK 500 SER B 148 -74.05 -142.11 REMARK 500 ASP B 175 72.74 -100.97 REMARK 500 THR B 288 153.61 71.57 REMARK 500 THR B 322 -92.06 -117.23 REMARK 500 ILE B 349 108.33 -33.28 REMARK 500 GLN B 351 125.05 -32.99 REMARK 500 TRP B 416 130.18 -37.88 REMARK 500 ALA B 417 -18.10 68.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 DBREF 3QTG A 1 461 UNP Q8ZYE0 KPYK_PYRAE 1 461 DBREF 3QTG B 1 461 UNP Q8ZYE0 KPYK_PYRAE 1 461 SEQRES 1 A 461 MET SER ALA PRO ARG GLY ASP HIS ALA ILE LEU ARG ALA SEQRES 2 A 461 ARG ASN LEU THR LYS ARG VAL ALA THR LEU GLY PRO SER SEQRES 3 A 461 THR ASP VAL LEU ARG PRO ASP GLU LEU ILE LYS PHE LEU SEQRES 4 A 461 ASP LEU VAL ASP GLY VAL ARG ILE ASN LEU ALA HIS ALA SEQRES 5 A 461 SER PRO ASN GLU VAL LYS PHE ARG ILE GLU ALA VAL ARG SEQRES 6 A 461 SER TYR GLU LYS ALA LYS ASN ARG PRO LEU ALA VAL ILE SEQRES 7 A 461 VAL ASP LEU LYS GLY PRO SER ILE ARG VAL GLY SER THR SEQRES 8 A 461 SER PRO ILE ASN VAL GLN GLU GLY GLU VAL VAL LYS PHE SEQRES 9 A 461 LYS LEU SER ASP LYS SER ASP GLY THR TYR ILE PRO VAL SEQRES 10 A 461 PRO ASN LYS ALA PHE PHE SER ALA VAL GLU GLN ASN ASP SEQRES 11 A 461 VAL ILE LEU MET LEU ASP GLY ARG LEU ARG LEU LYS VAL SEQRES 12 A 461 THR ASN THR GLY SER ASP TRP ILE GLU ALA VAL ALA GLU SEQRES 13 A 461 SER SER GLY VAL ILE THR GLY GLY LYS ALA ILE VAL VAL SEQRES 14 A 461 GLU GLY LYS ASP TYR ASP ILE SER THR PRO ALA GLU GLU SEQRES 15 A 461 ASP VAL GLU ALA LEU LYS ALA ILE SER PRO ILE ARG ASP SEQRES 16 A 461 ASN ILE ASP TYR VAL ALA ILE SER LEU ALA LYS SER CYS SEQRES 17 A 461 LYS ASP VAL ASP SER VAL ARG SER LEU LEU THR GLU LEU SEQRES 18 A 461 GLY PHE GLN SER GLN VAL ALA VAL LYS ILE GLU THR LYS SEQRES 19 A 461 GLY ALA VAL ASN ASN LEU GLU GLU LEU VAL GLN CYS SER SEQRES 20 A 461 ASP TYR VAL VAL VAL ALA ARG GLY ASP LEU GLY LEU HIS SEQRES 21 A 461 TYR GLY LEU ASP ALA LEU PRO ILE VAL GLN ARG ARG ILE SEQRES 22 A 461 VAL HIS THR SER LEU LYS TYR GLY LYS PRO ILE ALA VAL SEQRES 23 A 461 ALA THR GLN LEU LEU ASP SER MET GLN SER SER PRO ILE SEQRES 24 A 461 PRO THR ARG ALA GLU ILE ASN ASP VAL PHE THR THR ALA SEQRES 25 A 461 SER MET GLY VAL ASP SER LEU TRP LEU THR ASN GLU THR SEQRES 26 A 461 ALA SER GLY LYS TYR PRO LEU ALA ALA VAL SER TRP LEU SEQRES 27 A 461 SER ARG ILE LEU MET ASN VAL GLU TYR GLN ILE PRO GLN SEQRES 28 A 461 SER PRO LEU LEU GLN ASN SER ARG ASP ARG PHE ALA LYS SEQRES 29 A 461 GLY LEU VAL GLU LEU ALA GLN ASP LEU GLY ALA ASN ILE SEQRES 30 A 461 LEU VAL PHE SER MET SER GLY THR LEU ALA ARG ARG ILE SEQRES 31 A 461 ALA LYS PHE ARG PRO ARG GLY VAL VAL TYR VAL GLY THR SEQRES 32 A 461 PRO ASN VAL ARG VAL ALA ARG SER LEU SER ILE VAL TRP SEQRES 33 A 461 ALA LEU GLU PRO LEU TYR ILE PRO ALA GLU ASN TYR GLU SEQRES 34 A 461 GLU GLY LEU GLU LYS LEU ILE SER LEU LYS GLY THR THR SEQRES 35 A 461 PRO PHE VAL ALA THR TYR GLY ILE ARG GLY GLY VAL HIS SEQRES 36 A 461 SER VAL LYS VAL LYS LEU SEQRES 1 B 461 MET SER ALA PRO ARG GLY ASP HIS ALA ILE LEU ARG ALA SEQRES 2 B 461 ARG ASN LEU THR LYS ARG VAL ALA THR LEU GLY PRO SER SEQRES 3 B 461 THR ASP VAL LEU ARG PRO ASP GLU LEU ILE LYS PHE LEU SEQRES 4 B 461 ASP LEU VAL ASP GLY VAL ARG ILE ASN LEU ALA HIS ALA SEQRES 5 B 461 SER PRO ASN GLU VAL LYS PHE ARG ILE GLU ALA VAL ARG SEQRES 6 B 461 SER TYR GLU LYS ALA LYS ASN ARG PRO LEU ALA VAL ILE SEQRES 7 B 461 VAL ASP LEU LYS GLY PRO SER ILE ARG VAL GLY SER THR SEQRES 8 B 461 SER PRO ILE ASN VAL GLN GLU GLY GLU VAL VAL LYS PHE SEQRES 9 B 461 LYS LEU SER ASP LYS SER ASP GLY THR TYR ILE PRO VAL SEQRES 10 B 461 PRO ASN LYS ALA PHE PHE SER ALA VAL GLU GLN ASN ASP SEQRES 11 B 461 VAL ILE LEU MET LEU ASP GLY ARG LEU ARG LEU LYS VAL SEQRES 12 B 461 THR ASN THR GLY SER ASP TRP ILE GLU ALA VAL ALA GLU SEQRES 13 B 461 SER SER GLY VAL ILE THR GLY GLY LYS ALA ILE VAL VAL SEQRES 14 B 461 GLU GLY LYS ASP TYR ASP ILE SER THR PRO ALA GLU GLU SEQRES 15 B 461 ASP VAL GLU ALA LEU LYS ALA ILE SER PRO ILE ARG ASP SEQRES 16 B 461 ASN ILE ASP TYR VAL ALA ILE SER LEU ALA LYS SER CYS SEQRES 17 B 461 LYS ASP VAL ASP SER VAL ARG SER LEU LEU THR GLU LEU SEQRES 18 B 461 GLY PHE GLN SER GLN VAL ALA VAL LYS ILE GLU THR LYS SEQRES 19 B 461 GLY ALA VAL ASN ASN LEU GLU GLU LEU VAL GLN CYS SER SEQRES 20 B 461 ASP TYR VAL VAL VAL ALA ARG GLY ASP LEU GLY LEU HIS SEQRES 21 B 461 TYR GLY LEU ASP ALA LEU PRO ILE VAL GLN ARG ARG ILE SEQRES 22 B 461 VAL HIS THR SER LEU LYS TYR GLY LYS PRO ILE ALA VAL SEQRES 23 B 461 ALA THR GLN LEU LEU ASP SER MET GLN SER SER PRO ILE SEQRES 24 B 461 PRO THR ARG ALA GLU ILE ASN ASP VAL PHE THR THR ALA SEQRES 25 B 461 SER MET GLY VAL ASP SER LEU TRP LEU THR ASN GLU THR SEQRES 26 B 461 ALA SER GLY LYS TYR PRO LEU ALA ALA VAL SER TRP LEU SEQRES 27 B 461 SER ARG ILE LEU MET ASN VAL GLU TYR GLN ILE PRO GLN SEQRES 28 B 461 SER PRO LEU LEU GLN ASN SER ARG ASP ARG PHE ALA LYS SEQRES 29 B 461 GLY LEU VAL GLU LEU ALA GLN ASP LEU GLY ALA ASN ILE SEQRES 30 B 461 LEU VAL PHE SER MET SER GLY THR LEU ALA ARG ARG ILE SEQRES 31 B 461 ALA LYS PHE ARG PRO ARG GLY VAL VAL TYR VAL GLY THR SEQRES 32 B 461 PRO ASN VAL ARG VAL ALA ARG SER LEU SER ILE VAL TRP SEQRES 33 B 461 ALA LEU GLU PRO LEU TYR ILE PRO ALA GLU ASN TYR GLU SEQRES 34 B 461 GLU GLY LEU GLU LYS LEU ILE SER LEU LYS GLY THR THR SEQRES 35 B 461 PRO PHE VAL ALA THR TYR GLY ILE ARG GLY GLY VAL HIS SEQRES 36 B 461 SER VAL LYS VAL LYS LEU HET SO4 A 500 5 HET SO4 B 500 5 HET SO4 B 501 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *140(H2 O) HELIX 1 1 GLY A 24 VAL A 29 1 6 HELIX 2 2 ARG A 31 ASP A 40 1 10 HELIX 3 3 SER A 53 ASN A 72 1 20 HELIX 4 4 ASN A 119 VAL A 126 1 8 HELIX 5 5 ASP A 136 ARG A 138 5 3 HELIX 6 6 ALA A 180 SER A 191 1 12 HELIX 7 7 PRO A 192 ILE A 197 5 6 HELIX 8 8 SER A 207 LEU A 221 1 15 HELIX 9 9 THR A 233 ASN A 239 1 7 HELIX 10 10 ASN A 239 CYS A 246 1 8 HELIX 11 11 ARG A 254 GLY A 258 1 5 HELIX 12 12 ALA A 265 TYR A 280 1 16 HELIX 13 13 LEU A 291 SER A 296 5 6 HELIX 14 14 THR A 301 MET A 314 1 14 HELIX 15 15 THR A 322 SER A 327 1 6 HELIX 16 16 TYR A 330 ASN A 344 1 15 HELIX 17 17 ASN A 357 GLY A 374 1 18 HELIX 18 18 GLY A 384 LYS A 392 1 9 HELIX 19 19 ASN A 405 SER A 413 1 9 HELIX 20 20 ASN A 427 GLY A 440 1 14 HELIX 21 21 GLY B 24 VAL B 29 1 6 HELIX 22 22 ARG B 31 ASP B 40 1 10 HELIX 23 23 SER B 53 ASN B 72 1 20 HELIX 24 24 LYS B 120 VAL B 126 1 7 HELIX 25 25 ALA B 180 SER B 191 1 12 HELIX 26 26 PRO B 192 ILE B 197 5 6 HELIX 27 27 SER B 207 GLY B 222 1 16 HELIX 28 28 THR B 233 ASN B 239 1 7 HELIX 29 29 ASN B 239 CYS B 246 1 8 HELIX 30 30 ARG B 254 LEU B 259 1 6 HELIX 31 31 GLY B 262 ASP B 264 5 3 HELIX 32 32 ALA B 265 TYR B 280 1 16 HELIX 33 33 LEU B 291 SER B 296 5 6 HELIX 34 34 THR B 301 MET B 314 1 14 HELIX 35 35 THR B 322 SER B 327 1 6 HELIX 36 36 TYR B 330 VAL B 345 1 16 HELIX 37 37 ASN B 357 GLY B 374 1 18 HELIX 38 38 GLY B 384 LYS B 392 1 9 HELIX 39 39 ASN B 405 SER B 413 1 9 HELIX 40 40 ASN B 427 GLY B 440 1 14 SHEET 1 A 9 LYS A 18 THR A 22 0 SHEET 2 A 9 GLY A 44 ASN A 48 1 O ARG A 46 N ALA A 21 SHEET 3 A 9 ALA A 76 ASP A 80 1 O ASP A 80 N ILE A 47 SHEET 4 A 9 TYR A 199 ILE A 202 1 O ALA A 201 N VAL A 79 SHEET 5 A 9 GLN A 226 ILE A 231 1 O ALA A 228 N ILE A 202 SHEET 6 A 9 TYR A 249 ALA A 253 1 O TYR A 249 N VAL A 229 SHEET 7 A 9 ILE A 284 ALA A 287 1 O ALA A 287 N VAL A 252 SHEET 8 A 9 SER A 318 LEU A 321 1 O TRP A 320 N VAL A 286 SHEET 9 A 9 LYS A 18 THR A 22 1 N VAL A 20 O LEU A 321 SHEET 1 B 2 ILE A 94 VAL A 96 0 SHEET 2 B 2 GLY A 159 ILE A 161 -1 O ILE A 161 N ILE A 94 SHEET 1 C 6 ILE A 115 VAL A 117 0 SHEET 2 C 6 VAL A 101 LEU A 106 1 N LYS A 103 O ILE A 115 SHEET 3 C 6 TRP A 150 ALA A 155 -1 O ALA A 153 N VAL A 102 SHEET 4 C 6 LEU A 139 THR A 146 -1 N LYS A 142 O VAL A 154 SHEET 5 C 6 VAL A 131 MET A 134 -1 N ILE A 132 O LEU A 141 SHEET 6 C 6 ILE A 167 VAL A 169 -1 O VAL A 168 N LEU A 133 SHEET 1 D 5 LEU A 418 TYR A 422 0 SHEET 2 D 5 VAL A 399 THR A 403 1 N VAL A 399 O GLU A 419 SHEET 3 D 5 ASN A 376 PHE A 380 1 N VAL A 379 O TYR A 400 SHEET 4 D 5 PHE A 444 TYR A 448 1 O THR A 447 N LEU A 378 SHEET 5 D 5 SER A 456 LYS A 460 -1 O LYS A 458 N ALA A 446 SHEET 1 E 9 LYS B 18 THR B 22 0 SHEET 2 E 9 GLY B 44 ASN B 48 1 O ARG B 46 N ALA B 21 SHEET 3 E 9 ALA B 76 ASP B 80 1 O ILE B 78 N VAL B 45 SHEET 4 E 9 TYR B 199 ILE B 202 1 O ALA B 201 N VAL B 79 SHEET 5 E 9 GLN B 226 ILE B 231 1 O ALA B 228 N ILE B 202 SHEET 6 E 9 TYR B 249 ALA B 253 1 O VAL B 251 N ILE B 231 SHEET 7 E 9 ILE B 284 ALA B 287 1 O ALA B 287 N VAL B 252 SHEET 8 E 9 SER B 318 LEU B 321 1 O TRP B 320 N VAL B 286 SHEET 9 E 9 LYS B 18 THR B 22 1 N VAL B 20 O LEU B 321 SHEET 1 F 5 VAL B 101 LYS B 105 0 SHEET 2 F 5 TRP B 150 VAL B 154 -1 O ALA B 153 N VAL B 102 SHEET 3 F 5 LEU B 139 THR B 146 -1 N ASN B 145 O GLU B 152 SHEET 4 F 5 VAL B 131 MET B 134 -1 N ILE B 132 O LEU B 141 SHEET 5 F 5 VAL B 168 VAL B 169 -1 O VAL B 168 N LEU B 133 SHEET 1 G 5 LEU B 418 TYR B 422 0 SHEET 2 G 5 VAL B 399 THR B 403 1 N VAL B 399 O GLU B 419 SHEET 3 G 5 ASN B 376 PHE B 380 1 N VAL B 379 O TYR B 400 SHEET 4 G 5 PHE B 444 TYR B 448 1 O VAL B 445 N ASN B 376 SHEET 5 G 5 SER B 456 LYS B 460 -1 O LYS B 458 N ALA B 446 CISPEP 1 THR A 178 PRO A 179 0 -2.69 CISPEP 2 THR A 442 PRO A 443 0 -3.05 CISPEP 3 THR B 178 PRO B 179 0 -13.38 CISPEP 4 THR B 442 PRO B 443 0 1.22 SITE 1 AC1 9 SER A 381 MET A 382 SER A 383 GLY A 384 SITE 2 AC1 9 THR A 385 LEU A 386 TYR A 428 ILE A 450 SITE 3 AC1 9 HOH A 491 SITE 1 AC2 10 ASP A 108 SER B 381 SER B 383 GLY B 384 SITE 2 AC2 10 THR B 385 LEU B 386 GLY B 449 ILE B 450 SITE 3 AC2 10 HOH B 467 HOH B 517 SITE 1 AC3 6 LEU A 461 ARG B 359 ARG B 451 GLY B 452 SITE 2 AC3 6 HIS B 455 HOH B 518 CRYST1 116.300 107.400 105.000 90.00 110.50 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008598 0.000000 0.003215 0.00000 SCALE2 0.000000 0.009311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010168 0.00000