HEADER LIGASE 23-FEB-11 3QTY TITLE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE SYNTHETASE FROM TITLE 2 FRANCISELLA TULARENSIS COMPLEXED WITH PYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE (AIR) SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS; SOURCE 3 ORGANISM_TAXID: 119856; SOURCE 4 STRAIN: SCHU S4; SOURCE 5 GENE: FTT_0893, PURM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ALPHA-BETA FOLD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MALTSEVA,Y.KIM,J.HASSEMAN,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 06-DEC-23 3QTY 1 REMARK REVDAT 2 13-SEP-23 3QTY 1 REMARK SEQADV LINK REVDAT 1 16-MAR-11 3QTY 0 JRNL AUTH N.MALTSEVA,Y.KIM,J.HASSEMAN,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE SYNTHETASE JRNL TITL 2 FROM FRANCISELLA TULARENSIS COMPLEXED WITH PYROPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_601) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 61302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6731 - 5.0391 0.99 2832 148 0.1731 0.1933 REMARK 3 2 5.0391 - 4.0016 1.00 2734 160 0.1270 0.1357 REMARK 3 3 4.0016 - 3.4963 1.00 2703 137 0.1370 0.1635 REMARK 3 4 3.4963 - 3.1769 1.00 2674 153 0.1525 0.1882 REMARK 3 5 3.1769 - 2.9493 1.00 2672 156 0.1748 0.1873 REMARK 3 6 2.9493 - 2.7755 1.00 2631 160 0.1812 0.2405 REMARK 3 7 2.7755 - 2.6366 1.00 2622 171 0.1909 0.2085 REMARK 3 8 2.6366 - 2.5218 1.00 2647 132 0.1893 0.1972 REMARK 3 9 2.5218 - 2.4248 0.99 2650 128 0.1773 0.2826 REMARK 3 10 2.4248 - 2.3411 1.00 2630 136 0.1715 0.2222 REMARK 3 11 2.3411 - 2.2679 1.00 2652 133 0.1774 0.2034 REMARK 3 12 2.2679 - 2.2031 1.00 2639 131 0.1701 0.2432 REMARK 3 13 2.2031 - 2.1451 0.99 2636 148 0.1752 0.2392 REMARK 3 14 2.1451 - 2.0928 1.00 2656 113 0.1775 0.2155 REMARK 3 15 2.0928 - 2.0452 1.00 2594 141 0.1797 0.2428 REMARK 3 16 2.0452 - 2.0017 1.00 2612 154 0.1833 0.2495 REMARK 3 17 2.0017 - 1.9617 0.99 2627 143 0.1884 0.2266 REMARK 3 18 1.9617 - 1.9247 1.00 2599 135 0.1983 0.2484 REMARK 3 19 1.9247 - 1.8903 1.00 2613 144 0.2127 0.2567 REMARK 3 20 1.8903 - 1.8582 1.00 2632 136 0.2138 0.2651 REMARK 3 21 1.8582 - 1.8283 0.99 2615 145 0.2324 0.2471 REMARK 3 22 1.8283 - 1.8001 0.95 2517 111 0.2343 0.2816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 41.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.21820 REMARK 3 B22 (A**2) : -8.22010 REMARK 3 B33 (A**2) : -0.99810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5769 REMARK 3 ANGLE : 1.228 7855 REMARK 3 CHIRALITY : 0.113 866 REMARK 3 PLANARITY : 0.006 1041 REMARK 3 DIHEDRAL : 16.111 2170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 57.9479 16.7591 23.8175 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.0406 REMARK 3 T33: 0.0280 T12: 0.0057 REMARK 3 T13: 0.0077 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.1642 L22: 0.8303 REMARK 3 L33: 0.2502 L12: 0.0803 REMARK 3 L13: 0.1801 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.0081 S13: -0.0079 REMARK 3 S21: 0.1041 S22: -0.0279 S23: 0.0365 REMARK 3 S31: 0.0090 S32: 0.0133 S33: 0.0047 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 41.8432 -5.1458 8.1508 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1413 REMARK 3 T33: 0.1270 T12: 0.0036 REMARK 3 T13: 0.0030 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.7160 L22: 1.2728 REMARK 3 L33: 0.3718 L12: 0.3981 REMARK 3 L13: 0.3029 L23: 0.3071 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: -0.0157 S13: -0.0469 REMARK 3 S21: 0.1057 S22: -0.0344 S23: 0.0524 REMARK 3 S31: 0.0369 S32: -0.0143 S33: 0.0056 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61612 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.73700 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ID 3M84 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M TRIS PH7.0, REMARK 280 2.0 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.74100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.49100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.36050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.49100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.74100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.36050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 4 REMARK 465 LYS B 5 REMARK 465 TYR B 6 REMARK 465 GLU B 7 REMARK 465 ASP B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 10 REMARK 465 VAL B 11 REMARK 465 ASN B 12 REMARK 465 ILE B 13 REMARK 465 GLU B 14 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 465 ASN B 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 263 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 103 -55.01 -120.83 REMARK 500 HIS A 190 -123.08 63.05 REMARK 500 ASP A 203 -63.77 -107.02 REMARK 500 THR A 253 -162.91 -128.39 REMARK 500 ILE B 103 -52.93 -121.05 REMARK 500 HIS B 190 -117.84 61.84 REMARK 500 VAL B 204 -62.42 -97.61 REMARK 500 THR B 253 -162.37 -126.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 348 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M84 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH AMP REMARK 900 RELATED ID: IDP04643 RELATED DB: TARGETDB DBREF 3QTY A 1 347 UNP Q5NGF2 Q5NGF2_FRATT 1 347 DBREF 3QTY B 1 347 UNP Q5NGF2 Q5NGF2_FRATT 1 347 SEQADV 3QTY SER A -2 UNP Q5NGF2 EXPRESSION TAG SEQADV 3QTY ASN A -1 UNP Q5NGF2 EXPRESSION TAG SEQADV 3QTY ALA A 0 UNP Q5NGF2 EXPRESSION TAG SEQADV 3QTY SER B -2 UNP Q5NGF2 EXPRESSION TAG SEQADV 3QTY ASN B -1 UNP Q5NGF2 EXPRESSION TAG SEQADV 3QTY ALA B 0 UNP Q5NGF2 EXPRESSION TAG SEQRES 1 A 350 SER ASN ALA MSE ALA GLY LEU LYS TYR GLU ASP ALA GLY SEQRES 2 A 350 VAL ASN ILE GLU ALA GLY ASN GLN ALA VAL GLU ARG MSE SEQRES 3 A 350 LYS GLN HIS VAL LYS LYS THR PHE THR GLN ASP VAL LEU SEQRES 4 A 350 THR GLY LEU GLY SER PHE GLY SER LEU TYR SER LEU LYS SEQRES 5 A 350 ASN ILE ILE ASN ASN TYR ASP ASP PRO VAL LEU VAL GLN SEQRES 6 A 350 SER ILE ASP GLY VAL GLY THR LYS THR LYS VAL ALA VAL SEQRES 7 A 350 MSE CYS GLY LYS PHE GLU ASN LEU GLY TYR ASP LEU PHE SEQRES 8 A 350 SER ALA ALA THR ASN ASP ILE VAL VAL MSE GLY ALA LYS SEQRES 9 A 350 PRO ILE THR PHE LEU ASP TYR VAL ALA HIS ASP LYS LEU SEQRES 10 A 350 ASP PRO ALA ILE MSE GLU GLU LEU VAL LYS GLY MSE SER SEQRES 11 A 350 LYS ALA CYS ALA GLU CYS GLY VAL SER LEU VAL GLY GLY SEQRES 12 A 350 GLU THR ALA GLU MSE PRO GLY VAL TYR GLN ALA GLY GLU SEQRES 13 A 350 ILE ASP MSE VAL GLY VAL ILE THR GLY ILE VAL ASP ARG SEQRES 14 A 350 LYS ARG ILE ILE ASN GLY GLU ASN ILE LYS GLU GLY ASP SEQRES 15 A 350 ILE VAL PHE GLY LEU SER SER SER GLY LEU HIS THR ASN SEQRES 16 A 350 GLY TYR SER PHE ALA ARG LYS LEU PHE PHE ASP VAL ALA SEQRES 17 A 350 GLY ASN LYS HIS THR ASP THR TYR PRO GLU LEU GLU GLY SEQRES 18 A 350 LYS THR ILE GLY ASP VAL LEU LEU GLU PRO HIS ILE ASN SEQRES 19 A 350 TYR THR ASN ILE ILE HIS ASP PHE LEU ASP ASN GLY VAL SEQRES 20 A 350 ASP ILE LYS GLY MSE ALA HIS ILE THR GLY GLY GLY PHE SEQRES 21 A 350 ILE GLU ASN ILE PRO ARG VAL LEU PRO GLN GLY LEU GLY SEQRES 22 A 350 ALA GLN ILE ASP LYS ASP SER PHE ALA THR PRO ALA ILE SEQRES 23 A 350 PHE LYS LEU MSE GLN ARG ILE GLY ASP ILE SER GLU PHE SEQRES 24 A 350 GLU MSE TYR ARG SER PHE ASN MSE GLY ILE GLY MSE THR SEQRES 25 A 350 ILE ILE ALA SER GLN ASP GLN PHE ASP LYS MSE GLN GLU SEQRES 26 A 350 LEU ALA LYS LYS HIS THR ASN THR LYS LEU TYR GLN ILE SEQRES 27 A 350 GLY LYS ILE THR ASN SER GLY LYS VAL GLU ILE ILE SEQRES 1 B 350 SER ASN ALA MSE ALA GLY LEU LYS TYR GLU ASP ALA GLY SEQRES 2 B 350 VAL ASN ILE GLU ALA GLY ASN GLN ALA VAL GLU ARG MSE SEQRES 3 B 350 LYS GLN HIS VAL LYS LYS THR PHE THR GLN ASP VAL LEU SEQRES 4 B 350 THR GLY LEU GLY SER PHE GLY SER LEU TYR SER LEU LYS SEQRES 5 B 350 ASN ILE ILE ASN ASN TYR ASP ASP PRO VAL LEU VAL GLN SEQRES 6 B 350 SER ILE ASP GLY VAL GLY THR LYS THR LYS VAL ALA VAL SEQRES 7 B 350 MSE CYS GLY LYS PHE GLU ASN LEU GLY TYR ASP LEU PHE SEQRES 8 B 350 SER ALA ALA THR ASN ASP ILE VAL VAL MSE GLY ALA LYS SEQRES 9 B 350 PRO ILE THR PHE LEU ASP TYR VAL ALA HIS ASP LYS LEU SEQRES 10 B 350 ASP PRO ALA ILE MSE GLU GLU LEU VAL LYS GLY MSE SER SEQRES 11 B 350 LYS ALA CYS ALA GLU CYS GLY VAL SER LEU VAL GLY GLY SEQRES 12 B 350 GLU THR ALA GLU MSE PRO GLY VAL TYR GLN ALA GLY GLU SEQRES 13 B 350 ILE ASP MSE VAL GLY VAL ILE THR GLY ILE VAL ASP ARG SEQRES 14 B 350 LYS ARG ILE ILE ASN GLY GLU ASN ILE LYS GLU GLY ASP SEQRES 15 B 350 ILE VAL PHE GLY LEU SER SER SER GLY LEU HIS THR ASN SEQRES 16 B 350 GLY TYR SER PHE ALA ARG LYS LEU PHE PHE ASP VAL ALA SEQRES 17 B 350 GLY ASN LYS HIS THR ASP THR TYR PRO GLU LEU GLU GLY SEQRES 18 B 350 LYS THR ILE GLY ASP VAL LEU LEU GLU PRO HIS ILE ASN SEQRES 19 B 350 TYR THR ASN ILE ILE HIS ASP PHE LEU ASP ASN GLY VAL SEQRES 20 B 350 ASP ILE LYS GLY MSE ALA HIS ILE THR GLY GLY GLY PHE SEQRES 21 B 350 ILE GLU ASN ILE PRO ARG VAL LEU PRO GLN GLY LEU GLY SEQRES 22 B 350 ALA GLN ILE ASP LYS ASP SER PHE ALA THR PRO ALA ILE SEQRES 23 B 350 PHE LYS LEU MSE GLN ARG ILE GLY ASP ILE SER GLU PHE SEQRES 24 B 350 GLU MSE TYR ARG SER PHE ASN MSE GLY ILE GLY MSE THR SEQRES 25 B 350 ILE ILE ALA SER GLN ASP GLN PHE ASP LYS MSE GLN GLU SEQRES 26 B 350 LEU ALA LYS LYS HIS THR ASN THR LYS LEU TYR GLN ILE SEQRES 27 B 350 GLY LYS ILE THR ASN SER GLY LYS VAL GLU ILE ILE MODRES 3QTY MSE A 1 MET SELENOMETHIONINE MODRES 3QTY MSE A 23 MET SELENOMETHIONINE MODRES 3QTY MSE A 76 MET SELENOMETHIONINE MODRES 3QTY MSE A 98 MET SELENOMETHIONINE MODRES 3QTY MSE A 119 MET SELENOMETHIONINE MODRES 3QTY MSE A 126 MET SELENOMETHIONINE MODRES 3QTY MSE A 145 MET SELENOMETHIONINE MODRES 3QTY MSE A 156 MET SELENOMETHIONINE MODRES 3QTY MSE A 249 MET SELENOMETHIONINE MODRES 3QTY MSE A 287 MET SELENOMETHIONINE MODRES 3QTY MSE A 298 MET SELENOMETHIONINE MODRES 3QTY MSE A 304 MET SELENOMETHIONINE MODRES 3QTY MSE A 308 MET SELENOMETHIONINE MODRES 3QTY MSE A 320 MET SELENOMETHIONINE MODRES 3QTY MSE B 23 MET SELENOMETHIONINE MODRES 3QTY MSE B 76 MET SELENOMETHIONINE MODRES 3QTY MSE B 98 MET SELENOMETHIONINE MODRES 3QTY MSE B 119 MET SELENOMETHIONINE MODRES 3QTY MSE B 126 MET SELENOMETHIONINE MODRES 3QTY MSE B 145 MET SELENOMETHIONINE MODRES 3QTY MSE B 156 MET SELENOMETHIONINE MODRES 3QTY MSE B 249 MET SELENOMETHIONINE MODRES 3QTY MSE B 287 MET SELENOMETHIONINE MODRES 3QTY MSE B 298 MET SELENOMETHIONINE MODRES 3QTY MSE B 304 MET SELENOMETHIONINE MODRES 3QTY MSE B 308 MET SELENOMETHIONINE MODRES 3QTY MSE B 320 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 23 8 HET MSE A 76 16 HET MSE A 98 8 HET MSE A 119 8 HET MSE A 126 8 HET MSE A 145 8 HET MSE A 156 8 HET MSE A 249 8 HET MSE A 287 8 HET MSE A 298 8 HET MSE A 304 8 HET MSE A 308 8 HET MSE A 320 8 HET MSE B 23 8 HET MSE B 76 8 HET MSE B 98 8 HET MSE B 119 8 HET MSE B 126 8 HET MSE B 145 8 HET MSE B 156 8 HET MSE B 249 8 HET MSE B 287 8 HET MSE B 298 8 HET MSE B 304 8 HET MSE B 308 8 HET MSE B 320 8 HET SO4 A 400 5 HET TRS A 401 8 HET POP A 403 9 HET POP A 404 9 HET PO4 A 405 5 HET PO4 B 402 5 HET TRS B 400 8 HET POP B 401 9 HET TRS B 348 8 HET FMT B 403 3 HET FMT B 404 3 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM POP PYROPHOSPHATE 2- HETNAM PO4 PHOSPHATE ION HETNAM FMT FORMIC ACID HETSYN TRS TRIS BUFFER FORMUL 1 MSE 27(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 TRS 3(C4 H12 N O3 1+) FORMUL 5 POP 3(H2 O7 P2 2-) FORMUL 7 PO4 2(O4 P 3-) FORMUL 12 FMT 2(C H2 O2) FORMUL 14 HOH *536(H2 O) HELIX 1 1 GLY A 16 LYS A 29 1 14 HELIX 2 2 LEU A 48 TYR A 55 1 8 HELIX 3 3 THR A 69 GLY A 78 1 10 HELIX 4 4 ASN A 82 VAL A 97 1 16 HELIX 5 5 ASP A 115 CYS A 133 1 19 HELIX 6 6 LYS A 167 ILE A 169 5 3 HELIX 7 7 GLY A 193 ASP A 203 1 11 HELIX 8 8 TYR A 213 GLU A 217 5 5 HELIX 9 9 THR A 220 GLU A 227 1 8 HELIX 10 10 TYR A 232 ASN A 242 1 11 HELIX 11 11 GLY A 255 ILE A 261 1 7 HELIX 12 12 PRO A 262 LEU A 265 5 4 HELIX 13 13 LYS A 275 PHE A 278 5 4 HELIX 14 14 PRO A 281 GLY A 291 1 11 HELIX 15 15 SER A 294 PHE A 302 1 9 HELIX 16 16 SER A 313 ASP A 315 5 3 HELIX 17 17 GLN A 316 LYS A 325 1 10 HELIX 18 18 GLN B 18 LYS B 29 1 12 HELIX 19 19 LEU B 48 TYR B 55 1 8 HELIX 20 20 THR B 69 GLY B 78 1 10 HELIX 21 21 ASN B 82 VAL B 97 1 16 HELIX 22 22 ASP B 115 CYS B 133 1 19 HELIX 23 23 LYS B 167 ILE B 169 5 3 HELIX 24 24 GLY B 193 ASP B 203 1 11 HELIX 25 25 TYR B 213 GLU B 217 5 5 HELIX 26 26 THR B 220 LEU B 226 1 7 HELIX 27 27 TYR B 232 ASN B 242 1 11 HELIX 28 28 GLY B 255 ILE B 261 1 7 HELIX 29 29 PRO B 262 LEU B 265 5 4 HELIX 30 30 ASP B 276 PHE B 278 5 3 HELIX 31 31 PRO B 281 GLY B 291 1 11 HELIX 32 32 SER B 294 PHE B 302 1 9 HELIX 33 33 SER B 313 ASP B 315 5 3 HELIX 34 34 GLN B 316 LYS B 325 1 10 SHEET 1 A 6 VAL A 35 THR A 37 0 SHEET 2 A 6 SER A 44 SER A 47 -1 O LEU A 45 N LEU A 36 SHEET 3 A 6 PRO B 58 GLY B 66 -1 O LEU B 60 N TYR A 46 SHEET 4 A 6 ILE B 154 ASP B 165 -1 O GLY B 162 N VAL B 61 SHEET 5 A 6 LYS B 101 HIS B 111 -1 N ILE B 103 O THR B 161 SHEET 6 A 6 SER B 136 GLU B 144 1 O ALA B 143 N HIS B 111 SHEET 1 B 6 SER A 136 GLU A 144 0 SHEET 2 B 6 LYS A 101 HIS A 111 1 N ILE A 103 O SER A 136 SHEET 3 B 6 ILE A 154 ASP A 165 -1 O ILE A 163 N LYS A 101 SHEET 4 B 6 PRO A 58 GLY A 66 -1 N VAL A 61 O GLY A 162 SHEET 5 B 6 SER B 44 SER B 47 -1 O TYR B 46 N LEU A 60 SHEET 6 B 6 VAL B 35 THR B 37 -1 N LEU B 36 O LEU B 45 SHEET 1 C 6 GLY A 248 HIS A 251 0 SHEET 2 C 6 ILE A 306 ALA A 312 -1 O ILE A 311 N GLY A 248 SHEET 3 C 6 ILE A 180 SER A 185 -1 N PHE A 182 O ILE A 310 SHEET 4 C 6 LEU A 332 THR A 339 -1 O TYR A 333 N GLY A 183 SHEET 5 C 6 GLY A 270 ILE A 273 -1 N GLY A 270 O THR A 339 SHEET 6 C 6 VAL A 344 ILE A 346 1 O GLU A 345 N ILE A 273 SHEET 1 D 6 GLY B 248 HIS B 251 0 SHEET 2 D 6 ILE B 306 ALA B 312 -1 O ILE B 311 N GLY B 248 SHEET 3 D 6 ILE B 180 SER B 185 -1 N PHE B 182 O ILE B 310 SHEET 4 D 6 LEU B 332 THR B 339 -1 O TYR B 333 N GLY B 183 SHEET 5 D 6 GLY B 270 ASP B 274 -1 N ASP B 274 O ILE B 335 SHEET 6 D 6 VAL B 344 ILE B 347 1 O GLU B 345 N ALA B 271 LINK C ALA A 0 N AMSE A 1 1555 1555 1.33 LINK C ALA A 0 N BMSE A 1 1555 1555 1.33 LINK C AMSE A 1 N ALA A 2 1555 1555 1.33 LINK C BMSE A 1 N ALA A 2 1555 1555 1.33 LINK C ARG A 22 N MSE A 23 1555 1555 1.33 LINK C MSE A 23 N LYS A 24 1555 1555 1.33 LINK C VAL A 75 N AMSE A 76 1555 1555 1.33 LINK C VAL A 75 N BMSE A 76 1555 1555 1.32 LINK C AMSE A 76 N CYS A 77 1555 1555 1.33 LINK C BMSE A 76 N CYS A 77 1555 1555 1.33 LINK C VAL A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N GLY A 99 1555 1555 1.33 LINK C ILE A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N GLU A 120 1555 1555 1.33 LINK C GLY A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N SER A 127 1555 1555 1.33 LINK C GLU A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N PRO A 146 1555 1555 1.34 LINK C ASP A 155 N MSE A 156 1555 1555 1.32 LINK C MSE A 156 N VAL A 157 1555 1555 1.33 LINK C GLY A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N ALA A 250 1555 1555 1.33 LINK C LEU A 286 N MSE A 287 1555 1555 1.33 LINK C MSE A 287 N GLN A 288 1555 1555 1.33 LINK C AGLU A 297 N MSE A 298 1555 1555 1.33 LINK C BGLU A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N TYR A 299 1555 1555 1.33 LINK C ASN A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N GLY A 305 1555 1555 1.33 LINK C GLY A 307 N MSE A 308 1555 1555 1.33 LINK C MSE A 308 N THR A 309 1555 1555 1.33 LINK C LYS A 319 N MSE A 320 1555 1555 1.33 LINK C MSE A 320 N GLN A 321 1555 1555 1.32 LINK C ARG B 22 N MSE B 23 1555 1555 1.33 LINK C MSE B 23 N LYS B 24 1555 1555 1.33 LINK C VAL B 75 N MSE B 76 1555 1555 1.33 LINK C MSE B 76 N CYS B 77 1555 1555 1.33 LINK C VAL B 97 N MSE B 98 1555 1555 1.33 LINK C MSE B 98 N GLY B 99 1555 1555 1.33 LINK C ILE B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N AGLU B 120 1555 1555 1.33 LINK C MSE B 119 N BGLU B 120 1555 1555 1.33 LINK C GLY B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N SER B 127 1555 1555 1.33 LINK C GLU B 144 N MSE B 145 1555 1555 1.33 LINK C MSE B 145 N PRO B 146 1555 1555 1.34 LINK C ASP B 155 N MSE B 156 1555 1555 1.33 LINK C MSE B 156 N VAL B 157 1555 1555 1.33 LINK C GLY B 248 N MSE B 249 1555 1555 1.33 LINK C MSE B 249 N ALA B 250 1555 1555 1.33 LINK C LEU B 286 N MSE B 287 1555 1555 1.33 LINK C MSE B 287 N GLN B 288 1555 1555 1.33 LINK C GLU B 297 N MSE B 298 1555 1555 1.33 LINK C MSE B 298 N TYR B 299 1555 1555 1.33 LINK C ASN B 303 N MSE B 304 1555 1555 1.34 LINK C MSE B 304 N GLY B 305 1555 1555 1.34 LINK C GLY B 307 N MSE B 308 1555 1555 1.33 LINK C MSE B 308 N THR B 309 1555 1555 1.33 LINK C LYS B 319 N MSE B 320 1555 1555 1.33 LINK C MSE B 320 N GLN B 321 1555 1555 1.33 SITE 1 AC1 11 GLY A 68 THR A 69 ASN A 192 GLY A 193 SITE 2 AC1 11 TYR A 194 SER A 195 HOH A 357 HOH A 441 SITE 3 AC1 11 HOH A 502 HOH A 507 HOH B 442 SITE 1 AC2 9 ASN A 234 ILE A 235 HIS A 327 THR A 328 SITE 2 AC2 9 ASN A 329 THR A 330 HOH A 370 HOH A 459 SITE 3 AC2 9 HOH B 545 SITE 1 AC3 7 LYS A 113 LYS A 275 ALA A 279 THR A 280 SITE 2 AC3 7 LYS A 285 HOH A 486 HOH A 524 SITE 1 AC4 8 PHE A 42 ASP A 107 MSE A 119 VAL A 123 SITE 2 AC4 8 MSE A 126 LEU A 137 GLY A 140 HOH A 562 SITE 1 AC5 5 PRO A 146 LYS A 331 HOH A 387 HOH A 449 SITE 2 AC5 5 GLN B 150 SITE 1 AC6 8 MSE A 145 PRO A 146 GLY A 147 HOH A 387 SITE 2 AC6 8 THR B 69 SER B 195 ARG B 198 HOH B 578 SITE 1 AC7 7 ASN A 340 ASN B 234 HIS B 327 ASN B 329 SITE 2 AC7 7 HOH B 407 HOH B 462 HOH B 464 SITE 1 AC8 7 ASP B 107 MSE B 119 VAL B 123 LEU B 137 SITE 2 AC8 7 GLY B 139 GLY B 140 THR B 142 SITE 1 AC9 9 GLY B 68 THR B 69 ASN B 192 GLY B 193 SITE 2 AC9 9 TYR B 194 SER B 195 HOH B 385 HOH B 457 SITE 3 AC9 9 HOH B 574 SITE 1 BC1 3 ASN B 192 THR B 253 GLY B 254 SITE 1 BC2 4 ALA B 279 THR B 280 LYS B 285 HOH B 368 CRYST1 65.482 88.721 112.982 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008851 0.00000