HEADER DNA BINDING PROTEIN 23-FEB-11 3QU6 TITLE CRYSTAL STRUCTURE OF IRF-3 DBD FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRF3 PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HELIX-TURN-HELIX, GENE REGULATION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.E.DE IOANNES,C.R.ESCALANTE,A.K.AGGARWAL REVDAT 3 13-SEP-23 3QU6 1 REMARK SEQADV LINK REVDAT 2 14-SEP-11 3QU6 1 JRNL VERSN REVDAT 1 01-JUN-11 3QU6 0 JRNL AUTH P.DE IOANNES,C.R.ESCALANTE,A.K.AGGARWAL JRNL TITL STRUCTURES OF APO IRF-3 AND IRF-7 DNA BINDING DOMAINS: JRNL TITL 2 EFFECT OF LOOP L1 ON DNA BINDING. JRNL REF NUCLEIC ACIDS RES. V. 39 7300 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21596780 JRNL DOI 10.1093/NAR/GKR325 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 17521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3894 - 4.1781 0.96 2892 133 0.1911 0.2233 REMARK 3 2 4.1781 - 3.3169 0.97 2749 149 0.1872 0.2230 REMARK 3 3 3.3169 - 2.8978 0.99 2754 159 0.2329 0.2539 REMARK 3 4 2.8978 - 2.6329 0.99 2731 160 0.2409 0.3685 REMARK 3 5 2.6329 - 2.4442 0.99 2746 156 0.2697 0.3362 REMARK 3 6 2.4442 - 2.3000 1.00 2757 135 0.2631 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 46.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53410 REMARK 3 B22 (A**2) : -0.53410 REMARK 3 B33 (A**2) : 1.06810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2479 REMARK 3 ANGLE : 1.192 3362 REMARK 3 CHIRALITY : 0.096 335 REMARK 3 PLANARITY : 0.007 437 REMARK 3 DIHEDRAL : 15.846 891 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25580 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 38.384 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 1K, 100 MM NAAC, 300 MM ZNCL2, REMARK 280 8% CADAVERINE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.08067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.54033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.54033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.08067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 140 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 41 REMARK 465 LEU A 42 REMARK 465 ARG A 43 REMARK 465 GLN A 44 REMARK 465 ASP A 45 REMARK 465 ALA A 46 REMARK 465 GLN A 47 REMARK 465 GLN A 48 REMARK 465 ASN A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 PRO B 4 REMARK 465 GLY B 41 REMARK 465 LEU B 42 REMARK 465 ARG B 43 REMARK 465 GLN B 44 REMARK 465 ASP B 45 REMARK 465 ALA B 46 REMARK 465 GLN B 47 REMARK 465 GLN B 48 REMARK 465 ASN B 111 REMARK 465 SER B 112 REMARK 465 GLY B 113 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 THR C 3 REMARK 465 PRO C 4 REMARK 465 HIS C 40 REMARK 465 GLY C 41 REMARK 465 LEU C 42 REMARK 465 ARG C 43 REMARK 465 GLN C 44 REMARK 465 ASP C 45 REMARK 465 ALA C 46 REMARK 465 GLN C 47 REMARK 465 GLN C 48 REMARK 465 ASN C 111 REMARK 465 SER C 112 REMARK 465 GLY C 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 N CG CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 98 CE NZ REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 ARG B 7 CZ NH1 NH2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 39 CE NZ REMARK 470 HIS B 40 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ASN B 85 OD1 ND2 REMARK 470 LYS B 87 CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS C 5 CG CD CE NZ REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 LYS C 77 CE NZ REMARK 470 ARG C 86 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 88 CG CD OE1 OE2 REMARK 470 ARG C 96 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 50 O HOH C 156 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 115 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD2 REMARK 620 2 HOH A 164 O 102.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 114 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 59 OE1 REMARK 620 2 GLU A 59 OE2 55.5 REMARK 620 3 ASP C 17 OD2 99.9 144.1 REMARK 620 4 HOH C 155 O 131.5 83.7 100.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 117 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 94 OE1 REMARK 620 2 HIS A 104 NE2 92.6 REMARK 620 3 ASP B 102 OD1 120.8 125.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 115 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 94 OE2 REMARK 620 2 ASP B 99 OD1 101.9 REMARK 620 3 HIS B 101 ND1 108.2 131.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 116 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD1 REMARK 620 2 HIS A 101 ND1 148.2 REMARK 620 3 GLU B 94 OE1 99.8 98.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 114 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 102 OD1 REMARK 620 2 GLU B 94 OE2 112.6 REMARK 620 3 HIS B 104 NE2 121.9 104.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 121 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 137 O REMARK 620 2 HOH B 131 O 84.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 114 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 59 OE1 REMARK 620 2 GLU C 59 OE2 54.4 REMARK 620 3 HOH C 165 O 127.9 79.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 115 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 94 OE1 REMARK 620 2 HIS C 104 NE2 107.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 116 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 94 OE2 REMARK 620 2 HOH C 142 O 78.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 119 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QU3 RELATED DB: PDB DBREF 3QU6 A 1 113 UNP Q7Z5G6 Q7Z5G6_HUMAN 1 113 DBREF 3QU6 B 1 113 UNP Q7Z5G6 Q7Z5G6_HUMAN 1 113 DBREF 3QU6 C 1 113 UNP Q7Z5G6 Q7Z5G6_HUMAN 1 113 SEQADV 3QU6 GLY A -2 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 SER A -1 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 HIS A 0 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 MET A 84 UNP Q7Z5G6 LEU 84 ENGINEERED MUTATION SEQADV 3QU6 GLY B -2 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 SER B -1 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 HIS B 0 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 MET B 84 UNP Q7Z5G6 LEU 84 ENGINEERED MUTATION SEQADV 3QU6 GLY C -2 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 SER C -1 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 HIS C 0 UNP Q7Z5G6 EXPRESSION TAG SEQADV 3QU6 MET C 84 UNP Q7Z5G6 LEU 84 ENGINEERED MUTATION SEQRES 1 A 116 GLY SER HIS MET GLY THR PRO LYS PRO ARG ILE LEU PRO SEQRES 2 A 116 TRP LEU VAL SER GLN LEU ASP LEU GLY GLN LEU GLU GLY SEQRES 3 A 116 VAL ALA TRP VAL ASN LYS SER ARG THR ARG PHE ARG ILE SEQRES 4 A 116 PRO TRP LYS HIS GLY LEU ARG GLN ASP ALA GLN GLN GLU SEQRES 5 A 116 ASP PHE GLY ILE PHE GLN ALA TRP ALA GLU ALA THR GLY SEQRES 6 A 116 ALA TYR VAL PRO GLY ARG ASP LYS PRO ASP LEU PRO THR SEQRES 7 A 116 TRP LYS ARG ASN PHE ARG SER ALA MET ASN ARG LYS GLU SEQRES 8 A 116 GLY LEU ARG LEU ALA GLU ASP ARG SER LYS ASP PRO HIS SEQRES 9 A 116 ASP PRO HIS LYS ILE TYR GLU PHE VAL ASN SER GLY SEQRES 1 B 116 GLY SER HIS MET GLY THR PRO LYS PRO ARG ILE LEU PRO SEQRES 2 B 116 TRP LEU VAL SER GLN LEU ASP LEU GLY GLN LEU GLU GLY SEQRES 3 B 116 VAL ALA TRP VAL ASN LYS SER ARG THR ARG PHE ARG ILE SEQRES 4 B 116 PRO TRP LYS HIS GLY LEU ARG GLN ASP ALA GLN GLN GLU SEQRES 5 B 116 ASP PHE GLY ILE PHE GLN ALA TRP ALA GLU ALA THR GLY SEQRES 6 B 116 ALA TYR VAL PRO GLY ARG ASP LYS PRO ASP LEU PRO THR SEQRES 7 B 116 TRP LYS ARG ASN PHE ARG SER ALA MET ASN ARG LYS GLU SEQRES 8 B 116 GLY LEU ARG LEU ALA GLU ASP ARG SER LYS ASP PRO HIS SEQRES 9 B 116 ASP PRO HIS LYS ILE TYR GLU PHE VAL ASN SER GLY SEQRES 1 C 116 GLY SER HIS MET GLY THR PRO LYS PRO ARG ILE LEU PRO SEQRES 2 C 116 TRP LEU VAL SER GLN LEU ASP LEU GLY GLN LEU GLU GLY SEQRES 3 C 116 VAL ALA TRP VAL ASN LYS SER ARG THR ARG PHE ARG ILE SEQRES 4 C 116 PRO TRP LYS HIS GLY LEU ARG GLN ASP ALA GLN GLN GLU SEQRES 5 C 116 ASP PHE GLY ILE PHE GLN ALA TRP ALA GLU ALA THR GLY SEQRES 6 C 116 ALA TYR VAL PRO GLY ARG ASP LYS PRO ASP LEU PRO THR SEQRES 7 C 116 TRP LYS ARG ASN PHE ARG SER ALA MET ASN ARG LYS GLU SEQRES 8 C 116 GLY LEU ARG LEU ALA GLU ASP ARG SER LYS ASP PRO HIS SEQRES 9 C 116 ASP PRO HIS LYS ILE TYR GLU PHE VAL ASN SER GLY HET ZN A 114 1 HET ZN A 115 1 HET ZN A 116 1 HET ZN A 117 1 HET CL A 118 1 HET CL A 119 1 HET CL A 120 1 HET NA A 121 1 HET NA A 122 1 HET CL A 123 1 HET ZN B 114 1 HET ZN B 115 1 HET CL B 116 1 HET NA B 117 1 HET ZN C 114 1 HET ZN C 115 1 HET ZN C 116 1 HET CL C 118 1 HET CL C 119 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 4 ZN 9(ZN 2+) FORMUL 8 CL 7(CL 1-) FORMUL 11 NA 3(NA 1+) FORMUL 23 HOH *151(H2 O) HELIX 1 1 ARG A 7 GLY A 19 1 13 HELIX 2 2 GLY A 52 THR A 61 1 10 HELIX 3 3 ASP A 72 ARG A 86 1 15 HELIX 4 4 ARG B 7 GLY B 19 1 13 HELIX 5 5 GLY B 52 THR B 61 1 10 HELIX 6 6 ASP B 72 ARG B 86 1 15 HELIX 7 7 ARG C 7 GLY C 19 1 13 HELIX 8 8 GLY C 52 THR C 61 1 10 HELIX 9 9 ASP C 72 ARG C 86 1 15 SHEET 1 A 4 ALA A 25 TRP A 26 0 SHEET 2 A 4 ARG A 33 PRO A 37 -1 O ARG A 35 N ALA A 25 SHEET 3 A 4 HIS A 104 PHE A 109 -1 O TYR A 107 N PHE A 34 SHEET 4 A 4 LEU A 90 ARG A 96 -1 N ARG A 91 O GLU A 108 SHEET 1 B 4 ALA B 25 TRP B 26 0 SHEET 2 B 4 ARG B 33 PRO B 37 -1 O ARG B 35 N ALA B 25 SHEET 3 B 4 HIS B 104 PHE B 109 -1 O LYS B 105 N ILE B 36 SHEET 4 B 4 LEU B 90 ASP B 95 -1 N ARG B 91 O GLU B 108 SHEET 1 C 4 ALA C 25 TRP C 26 0 SHEET 2 C 4 ARG C 33 PRO C 37 -1 O ARG C 35 N ALA C 25 SHEET 3 C 4 HIS C 104 PHE C 109 -1 O TYR C 107 N PHE C 34 SHEET 4 C 4 LEU C 90 ASP C 95 -1 N ARG C 91 O GLU C 108 LINK OD2 ASP A 17 ZN ZN A 115 1555 1555 2.04 LINK OD2 ASP A 50 NA NA A 122 1555 1555 3.06 LINK OE1 GLU A 59 ZN ZN A 114 1555 1555 2.08 LINK OE2 GLU A 59 ZN ZN A 114 1555 1555 2.56 LINK OE1 GLU A 94 ZN ZN A 117 1555 1555 2.02 LINK OE2 GLU A 94 ZN ZN B 115 1555 1555 1.99 LINK OD1 ASP A 99 ZN ZN A 116 1555 1555 1.94 LINK ND1 HIS A 101 ZN ZN A 116 1555 1555 2.09 LINK OD1 ASP A 102 ZN ZN B 114 1555 1555 1.94 LINK NE2 HIS A 104 ZN ZN A 117 1555 1555 1.98 LINK ZN ZN A 114 OD2 ASP C 17 1555 1555 2.02 LINK ZN ZN A 114 O HOH C 155 1555 1555 2.07 LINK ZN ZN A 115 O HOH A 164 1555 1555 2.05 LINK ZN ZN A 116 OE1 GLU B 94 1555 1555 2.05 LINK ZN ZN A 117 OD1 ASP B 102 1555 1555 1.95 LINK NA NA A 121 O HOH A 137 1555 1555 3.04 LINK NA NA A 121 O HOH B 131 1555 1555 2.97 LINK OE2 GLU B 94 ZN ZN B 114 1555 1555 1.98 LINK OD1 ASP B 99 ZN ZN B 115 1555 1555 1.95 LINK ND1 HIS B 101 ZN ZN B 115 1555 1555 2.06 LINK NE2 HIS B 104 ZN ZN B 114 1555 1555 2.04 LINK OE1 GLU C 59 ZN ZN C 114 1555 1555 2.33 LINK OE2 GLU C 59 ZN ZN C 114 1555 1555 2.53 LINK OE1 GLU C 94 ZN ZN C 115 1555 1555 2.05 LINK OE2 GLU C 94 ZN ZN C 116 1555 1555 1.96 LINK NE2 HIS C 104 ZN ZN C 115 1555 1555 2.01 LINK ZN ZN C 114 O HOH C 165 1555 1555 2.33 LINK ZN ZN C 116 O HOH C 142 1555 1555 2.38 SITE 1 AC1 5 GLU A 59 CL A 123 VAL C 13 ASP C 17 SITE 2 AC1 5 HOH C 155 SITE 1 AC2 5 VAL A 13 ASP A 17 CL A 119 HOH A 164 SITE 2 AC2 5 GLU B 59 SITE 1 AC3 4 ASP A 99 HIS A 101 CL A 120 GLU B 94 SITE 1 AC4 4 GLU A 94 HIS A 104 ASP B 102 CL B 116 SITE 1 AC5 7 ARG A 96 ASP A 102 HIS A 104 GLU B 94 SITE 2 AC5 7 ARG B 96 HIS B 104 ZN B 114 SITE 1 AC6 6 ASP A 17 ZN A 115 HOH A 166 PHE B 51 SITE 2 AC6 6 GLN B 55 GLU B 59 SITE 1 AC7 4 ASP A 99 HIS A 101 ZN A 116 GLU B 94 SITE 1 AC8 4 GLY A 23 HOH A 137 GLY B 23 HOH B 131 SITE 1 AC9 3 ASP A 50 GLY A 52 GLN A 55 SITE 1 BC1 4 ASP A 102 CL A 118 GLU B 94 HIS B 104 SITE 1 BC2 6 PHE A 51 GLN A 55 GLU A 59 ZN A 114 SITE 2 BC2 6 HOH A 134 ASP C 17 SITE 1 BC3 4 GLU A 94 GLU B 88 ASP B 99 HIS B 101 SITE 1 BC4 7 GLU A 94 HIS A 104 ZN A 117 ARG B 96 SITE 2 BC4 7 ASP B 99 ASP B 102 HIS B 104 SITE 1 BC5 3 GLY B 52 PHE B 54 GLN B 55 SITE 1 BC6 4 ASP B 17 GLU C 59 CL C 118 HOH C 165 SITE 1 BC7 5 GLU C 94 ASP C 102 HIS C 104 ILE C 106 SITE 2 BC7 5 CL C 119 SITE 1 BC8 4 GLU C 94 ASP C 99 HIS C 101 HOH C 142 SITE 1 BC9 4 ASP B 17 GLU C 59 ZN C 114 HOH C 159 SITE 1 CC1 6 GLU C 94 ARG C 96 ASP C 99 ASP C 102 SITE 2 CC1 6 HIS C 104 ZN C 115 CRYST1 64.908 64.908 157.621 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015406 0.008895 0.000000 0.00000 SCALE2 0.000000 0.017790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006344 0.00000