HEADER TRANSFERASE 24-FEB-11 3QUV TITLE CRYSTAL STRUCTURE OF A TRNA-GUANINE-N1-METHYLTRANSFERASE FROM TITLE 2 MYCOBACTERIUM ABSCESSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE, TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 561007; SOURCE 4 STRAIN: DSM 44196; SOURCE 5 ATCC: 19977; SOURCE 6 GENE: MAB_3226C, TRMD KEYWDS SSSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 SSGCID, TRNA METHYLTRANSFERASE, TRMD, S-ADENOSYL-METHIONINE, S- KEYWDS 3 ADENOSYL-HOMOCYSTEINE, SAM, SAH, CHRONIC LUNG DISEASE, PROTEIN KNOT, KEYWDS 4 3(1) TREFOIL KNOT, DOMAIN SWAP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3QUV 1 REMARK SEQADV REVDAT 2 22-APR-15 3QUV 1 JRNL VERSN REVDAT 1 16-MAR-11 3QUV 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 54992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2798 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.682 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3522 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4823 ; 1.448 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;32.659 ;22.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;12.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.194 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2701 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2227 ; 0.912 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3614 ; 1.629 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 2.419 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1195 ; 3.976 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3081 10.1594 24.6561 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.0192 REMARK 3 T33: 0.0430 T12: -0.0111 REMARK 3 T13: -0.0028 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.8076 L22: 0.1487 REMARK 3 L33: 0.5937 L12: -0.3210 REMARK 3 L13: -0.6201 L23: 0.2600 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.0015 S13: 0.0054 REMARK 3 S21: -0.0170 S22: 0.0115 S23: 0.0042 REMARK 3 S31: 0.0184 S32: -0.0180 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 231 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7168 19.4940 21.7663 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.0142 REMARK 3 T33: 0.0390 T12: 0.0008 REMARK 3 T13: 0.0072 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.4327 L22: 0.1387 REMARK 3 L33: 0.3631 L12: -0.1213 REMARK 3 L13: -0.2721 L23: 0.1635 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: -0.0335 S13: 0.0545 REMARK 3 S21: -0.0686 S22: -0.0030 S23: -0.0245 REMARK 3 S31: -0.0433 S32: -0.0007 S33: -0.0340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3QUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3KNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYABA.00937.A.A1 PW30232 AT 24.4 MG/ML REMARK 280 AGAINST JCSG + E1, 2 M AMMONIUM SULFATE, 0.1 M SODIUM CACODYLATE REMARK 280 PH 6.5 WITH 20% ETHYLENE GLYCOL AS A CRYO-PROTECTANT, CRYSTAL REMARK 280 TRACKING ID 219633E1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.83000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 ASN B 162 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 223 57.26 -144.22 REMARK 500 SER B 19 -136.35 51.92 REMARK 500 TYR B 111 -134.26 59.48 REMARK 500 ARG B 223 59.63 -141.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 245 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYABA.00937.A RELATED DB: TARGETDB DBREF 3QUV A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 3QUV B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 3QUV GLY A -3 UNP B1MDI3 EXPRESSION TAG SEQADV 3QUV PRO A -2 UNP B1MDI3 EXPRESSION TAG SEQADV 3QUV GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 3QUV SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 3QUV GLY B -3 UNP B1MDI3 EXPRESSION TAG SEQADV 3QUV PRO B -2 UNP B1MDI3 EXPRESSION TAG SEQADV 3QUV GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 3QUV SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 246 GLY PRO GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE SEQRES 2 A 246 PRO GLU TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY SEQRES 3 A 246 LYS ALA ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS SEQRES 4 A 246 ASP LEU ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL SEQRES 5 A 246 ASP ASP SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET SEQRES 6 A 246 LYS PRO THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS SEQRES 7 A 246 THR SER GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY SEQRES 8 A 246 TYR PRO PHE THR GLN GLU THR ALA TRP GLN TRP SER THR SEQRES 9 A 246 GLU ASP HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY SEQRES 10 A 246 ILE ASP GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET SEQRES 11 A 246 ARG VAL ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN SEQRES 12 A 246 GLY GLY GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL SEQRES 13 A 246 LEU ARG LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER SEQRES 14 A 246 ALA GLN GLU ASP SER HIS SER GLU GLY MET ALA SER LEU SEQRES 15 A 246 LEU GLU GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG SEQRES 16 A 246 GLY MET ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS SEQRES 17 A 246 ALA LYS ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN SEQRES 18 A 246 ARG THR ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SEQRES 19 A 246 SER PRO THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 246 GLY PRO GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE SEQRES 2 B 246 PRO GLU TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY SEQRES 3 B 246 LYS ALA ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS SEQRES 4 B 246 ASP LEU ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL SEQRES 5 B 246 ASP ASP SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET SEQRES 6 B 246 LYS PRO THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS SEQRES 7 B 246 THR SER GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY SEQRES 8 B 246 TYR PRO PHE THR GLN GLU THR ALA TRP GLN TRP SER THR SEQRES 9 B 246 GLU ASP HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY SEQRES 10 B 246 ILE ASP GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET SEQRES 11 B 246 ARG VAL ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN SEQRES 12 B 246 GLY GLY GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL SEQRES 13 B 246 LEU ARG LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER SEQRES 14 B 246 ALA GLN GLU ASP SER HIS SER GLU GLY MET ALA SER LEU SEQRES 15 B 246 LEU GLU GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG SEQRES 16 B 246 GLY MET ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS SEQRES 17 B 246 ALA LYS ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN SEQRES 18 B 246 ARG THR ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SEQRES 19 B 246 SER PRO THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET EDO A 243 4 HET EDO A 244 4 HET EDO A 245 4 HET EDO B 243 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *390(H2 O) HELIX 1 1 PHE A 9 TYR A 12 5 4 HELIX 2 2 LEU A 13 SER A 19 1 7 HELIX 3 3 PRO A 21 ALA A 27 1 7 HELIX 4 4 ARG A 38 THR A 41 5 4 HELIX 5 5 LYS A 62 CYS A 74 1 13 HELIX 6 6 THR A 91 SER A 99 1 9 HELIX 7 7 ASP A 115 ALA A 123 1 9 HELIX 8 8 GLY A 141 ARG A 154 1 14 HELIX 9 9 PRO A 196 SER A 201 5 6 HELIX 10 10 ASP A 203 ARG A 223 1 21 HELIX 11 11 PRO A 224 LEU A 227 5 4 HELIX 12 12 PHE B 9 ARG B 17 5 9 HELIX 13 13 GLN B 18 ALA B 27 1 10 HELIX 14 14 ARG B 38 THR B 41 5 4 HELIX 15 15 LYS B 62 CYS B 74 1 13 HELIX 16 16 THR B 91 SER B 99 1 9 HELIX 17 17 GLN B 116 THR B 124 1 9 HELIX 18 18 GLY B 141 ARG B 154 1 14 HELIX 19 19 VAL B 156 GLY B 161 1 6 HELIX 20 20 ASN B 162 ALA B 166 5 5 HELIX 21 21 PRO B 196 SER B 201 5 6 HELIX 22 22 ASP B 203 ARG B 223 1 21 HELIX 23 23 PRO B 224 GLY B 228 5 5 SHEET 1 A 6 VAL A 30 ASP A 36 0 SHEET 2 A 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 A 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 A 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 A 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 A 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 B 2 ASP A 49 ASP A 50 0 SHEET 2 B 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 C 2 SER A 189 TRP A 190 0 SHEET 2 C 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 D 6 VAL B 30 ASP B 36 0 SHEET 2 D 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 D 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 D 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 D 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 D 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 E 2 ASP B 49 ASP B 50 0 SHEET 2 E 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 F 2 SER B 189 TRP B 190 0 SHEET 2 F 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 0.29 CISPEP 2 ARG B 186 PRO B 187 0 2.42 SITE 1 AC1 8 THR A 84 PRO A 85 LEU A 138 GLY A 140 SITE 2 AC1 8 GLY A 141 HOH A 282 HOH A 352 HOH A 358 SITE 1 AC2 7 VAL A 82 PRO A 83 THR A 84 ARG A 110 SITE 2 AC2 7 GLY A 113 ILE A 114 HOH A 342 SITE 1 AC3 8 THR B 84 PRO B 85 LEU B 138 GLY B 140 SITE 2 AC3 8 HOH B 249 HOH B 306 HOH B 323 HOH B 382 SITE 1 AC4 5 ASP A 71 LEU A 200 SER A 201 HOH A 384 SITE 2 AC4 5 ARG B 191 CRYST1 73.660 79.080 86.010 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013576 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012645 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011627 0.00000