HEADER TRANSFERASE/TRANSFERASE INHIBITOR 25-FEB-11 3QV8 TITLE CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA PYRUVATE KINASE(LMPYK)IN TITLE 2 COMPLEX WITH BENZOTHIAZOLE-2,5-DISULFONIC ACID. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE KINASE; COMPND 3 CHAIN: D, A; COMPND 4 SYNONYM: PK; COMPND 5 EC: 2.7.1.40; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 STRAIN: BEL46; SOURCE 5 GENE: PKY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PYRUVATE KINASE, GLYCOLYSIS, TIM BARREL, SUGAR KINASE, ADP/ATP KEYWDS 2 BINDING, CYTOSOL, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.P.MORGAN,D.S.AULD,I.W.MCNAE,M.W.NOWICKI,P.A.M.MICHELS, AUTHOR 2 L.A.FOTHERGILL-GILMORE,M.D.WALKINSHAW REVDAT 5 13-SEP-23 3QV8 1 REMARK REVDAT 4 21-SEP-11 3QV8 1 JRNL REVDAT 3 17-AUG-11 3QV8 1 AUTHOR REVDAT 2 03-AUG-11 3QV8 1 JRNL REVDAT 1 29-JUN-11 3QV8 0 JRNL AUTH H.P.MORGAN,I.W.MCNAE,M.W.NOWICKI,W.ZHONG,P.A.MICHELS, JRNL AUTH 2 D.S.AULD,L.A.FOTHERGILL-GILMORE,M.D.WALKINSHAW JRNL TITL THE TRYPANOCIDAL DRUG SURAMIN AND OTHER TRYPAN BLUE MIMETICS JRNL TITL 2 ARE INHIBITORS OF PYRUVATE KINASES AND BIND TO THE ADENOSINE JRNL TITL 3 SITE. JRNL REF J.BIOL.CHEM. V. 286 31232 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21733839 JRNL DOI 10.1074/JBC.M110.212613 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2485 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3409 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13000 REMARK 3 B22 (A**2) : 3.92000 REMARK 3 B33 (A**2) : -2.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.583 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6928 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9394 ; 1.259 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 891 ; 5.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;38.004 ;24.770 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1198 ;16.330 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.723 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1093 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5168 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4415 ; 0.536 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7134 ; 1.019 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2513 ; 1.401 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2256 ; 2.448 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49123 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 44.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.450 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : 0.60500 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1PKL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7-16% PEG 8,000, 20 MM TEA BUFFER (PH REMARK 280 7.2), 50 MM MGCL2, 100 MM KCL AND 10-25% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.27700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.64100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.80100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.27700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.64100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.80100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.27700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.64100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.80100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.27700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.64100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.80100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -120.55400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 0 REMARK 465 HIS D 483 REMARK 465 LYS D 484 REMARK 465 VAL D 485 REMARK 465 LYS D 486 REMARK 465 GLY D 487 REMARK 465 TYR D 488 REMARK 465 MET A 0 REMARK 465 GLU A 88 REMARK 465 ILE A 89 REMARK 465 ARG A 90 REMARK 465 THR A 91 REMARK 465 GLY A 92 REMARK 465 GLN A 93 REMARK 465 PHE A 94 REMARK 465 VAL A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 ASP A 98 REMARK 465 ALA A 99 REMARK 465 VAL A 100 REMARK 465 MET A 101 REMARK 465 GLU A 102 REMARK 465 ARG A 103 REMARK 465 GLY A 104 REMARK 465 ALA A 105 REMARK 465 THR A 106 REMARK 465 CYS A 107 REMARK 465 TYR A 108 REMARK 465 VAL A 109 REMARK 465 THR A 110 REMARK 465 THR A 111 REMARK 465 ASP A 112 REMARK 465 PRO A 113 REMARK 465 ALA A 114 REMARK 465 PHE A 115 REMARK 465 ALA A 116 REMARK 465 ASP A 117 REMARK 465 LYS A 118 REMARK 465 GLY A 119 REMARK 465 THR A 120 REMARK 465 LYS A 121 REMARK 465 ASP A 122 REMARK 465 LYS A 123 REMARK 465 PHE A 124 REMARK 465 TYR A 125 REMARK 465 ILE A 126 REMARK 465 ASP A 127 REMARK 465 TYR A 128 REMARK 465 GLN A 129 REMARK 465 ASN A 130 REMARK 465 LEU A 131 REMARK 465 SER A 132 REMARK 465 LYS A 133 REMARK 465 VAL A 134 REMARK 465 VAL A 135 REMARK 465 ARG A 136 REMARK 465 PRO A 137 REMARK 465 GLY A 138 REMARK 465 ASN A 139 REMARK 465 TYR A 140 REMARK 465 ILE A 141 REMARK 465 TYR A 142 REMARK 465 ILE A 143 REMARK 465 ASP A 144 REMARK 465 ASP A 145 REMARK 465 GLY A 146 REMARK 465 ILE A 147 REMARK 465 LEU A 148 REMARK 465 ILE A 149 REMARK 465 LEU A 150 REMARK 465 GLN A 151 REMARK 465 VAL A 152 REMARK 465 GLN A 153 REMARK 465 SER A 154 REMARK 465 HIS A 155 REMARK 465 GLU A 156 REMARK 465 ASP A 157 REMARK 465 GLU A 158 REMARK 465 GLN A 159 REMARK 465 THR A 160 REMARK 465 LEU A 161 REMARK 465 GLU A 162 REMARK 465 CYS A 163 REMARK 465 THR A 164 REMARK 465 VAL A 165 REMARK 465 THR A 166 REMARK 465 ASN A 167 REMARK 465 SER A 168 REMARK 465 HIS A 169 REMARK 465 THR A 170 REMARK 465 ILE A 171 REMARK 465 SER A 172 REMARK 465 ASP A 173 REMARK 465 ARG A 174 REMARK 465 ARG A 175 REMARK 465 GLY A 176 REMARK 465 VAL A 177 REMARK 465 ASN A 178 REMARK 465 LEU A 179 REMARK 465 PRO A 180 REMARK 465 GLY A 181 REMARK 465 CYS A 182 REMARK 465 ASP A 482 REMARK 465 HIS A 483 REMARK 465 LYS A 484 REMARK 465 VAL A 485 REMARK 465 LYS A 486 REMARK 465 GLY A 487 REMARK 465 TYR A 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO D 29 -52.07 -29.61 REMARK 500 LYS D 118 57.10 -100.85 REMARK 500 ASP D 144 75.44 67.16 REMARK 500 ASP D 157 -152.59 -145.05 REMARK 500 HIS D 169 130.04 -174.59 REMARK 500 LEU D 186 151.55 -48.68 REMARK 500 THR D 296 148.50 71.15 REMARK 500 MET D 298 -70.71 -88.98 REMARK 500 SER D 330 -107.17 -105.86 REMARK 500 LYS D 335 22.08 -148.10 REMARK 500 ASN D 415 38.45 -90.00 REMARK 500 GLU D 451 -19.76 -48.99 REMARK 500 LYS D 453 -2.30 90.01 REMARK 500 ALA D 481 -164.91 -110.73 REMARK 500 GLN D 491 151.35 173.52 REMARK 500 THR A 296 142.14 65.85 REMARK 500 SER A 330 -102.47 -103.04 REMARK 500 ASP A 450 58.30 37.34 REMARK 500 LYS A 453 -9.88 71.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S62 D 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S62 A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PKL RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3QV6 RELATED DB: PDB REMARK 900 RELATED ID: 3QV7 RELATED DB: PDB REMARK 900 RELATED ID: 3QV9 RELATED DB: PDB DBREF 3QV8 D 0 498 UNP Q27686 KPYK_LEIME 1 499 DBREF 3QV8 A 0 498 UNP Q27686 KPYK_LEIME 1 499 SEQRES 1 D 499 MET SER GLN LEU ALA HIS ASN LEU THR LEU SER ILE PHE SEQRES 2 D 499 ASP PRO VAL ALA ASN TYR ARG ALA ALA ARG ILE ILE CYS SEQRES 3 D 499 THR ILE GLY PRO SER THR GLN SER VAL GLU ALA LEU LYS SEQRES 4 D 499 GLY LEU ILE GLN SER GLY MET SER VAL ALA ARG MET ASN SEQRES 5 D 499 PHE SER HIS GLY SER HIS GLU TYR HIS GLN THR THR ILE SEQRES 6 D 499 ASN ASN VAL ARG GLN ALA ALA ALA GLU LEU GLY VAL ASN SEQRES 7 D 499 ILE ALA ILE ALA LEU ASP THR LYS GLY PRO GLU ILE ARG SEQRES 8 D 499 THR GLY GLN PHE VAL GLY GLY ASP ALA VAL MET GLU ARG SEQRES 9 D 499 GLY ALA THR CYS TYR VAL THR THR ASP PRO ALA PHE ALA SEQRES 10 D 499 ASP LYS GLY THR LYS ASP LYS PHE TYR ILE ASP TYR GLN SEQRES 11 D 499 ASN LEU SER LYS VAL VAL ARG PRO GLY ASN TYR ILE TYR SEQRES 12 D 499 ILE ASP ASP GLY ILE LEU ILE LEU GLN VAL GLN SER HIS SEQRES 13 D 499 GLU ASP GLU GLN THR LEU GLU CYS THR VAL THR ASN SER SEQRES 14 D 499 HIS THR ILE SER ASP ARG ARG GLY VAL ASN LEU PRO GLY SEQRES 15 D 499 CYS ASP VAL ASP LEU PRO ALA VAL SER ALA LYS ASP ARG SEQRES 16 D 499 VAL ASP LEU GLN PHE GLY VAL GLU GLN GLY VAL ASP MET SEQRES 17 D 499 ILE PHE ALA SER PHE ILE ARG SER ALA GLU GLN VAL GLY SEQRES 18 D 499 ASP VAL ARG LYS ALA LEU GLY PRO LYS GLY ARG ASP ILE SEQRES 19 D 499 MET ILE ILE CYS LYS ILE GLU ASN HIS GLN GLY VAL GLN SEQRES 20 D 499 ASN ILE ASP SER ILE ILE GLU GLU SER ASP GLY ILE MET SEQRES 21 D 499 VAL ALA ARG GLY ASP LEU GLY VAL GLU ILE PRO ALA GLU SEQRES 22 D 499 LYS VAL VAL VAL ALA GLN LYS ILE LEU ILE SER LYS CYS SEQRES 23 D 499 ASN VAL ALA GLY LYS PRO VAL ILE CYS ALA THR GLN MET SEQRES 24 D 499 LEU GLU SER MET THR TYR ASN PRO ARG PRO THR ARG ALA SEQRES 25 D 499 GLU VAL SER ASP VAL ALA ASN ALA VAL PHE ASN GLY ALA SEQRES 26 D 499 ASP CYS VAL MET LEU SER GLY GLU THR ALA LYS GLY LYS SEQRES 27 D 499 TYR PRO ASN GLU VAL VAL GLN TYR MET ALA ARG ILE CYS SEQRES 28 D 499 LEU GLU ALA GLN SER ALA LEU ASN GLU TYR VAL PHE PHE SEQRES 29 D 499 ASN SER ILE LYS LYS LEU GLN HIS ILE PRO MET SER ALA SEQRES 30 D 499 ASP GLU ALA VAL CYS SER SER ALA VAL ASN SER VAL TYR SEQRES 31 D 499 GLU THR LYS ALA LYS ALA MET VAL VAL LEU SER ASN THR SEQRES 32 D 499 GLY ARG SER ALA ARG LEU VAL ALA LYS TYR ARG PRO ASN SEQRES 33 D 499 CYS PRO ILE VAL CYS VAL THR THR ARG LEU GLN THR CYS SEQRES 34 D 499 ARG GLN LEU ASN ILE THR GLN GLY VAL GLU SER VAL PHE SEQRES 35 D 499 PHE ASP ALA ASP LYS LEU GLY HIS ASP GLU GLY LYS GLU SEQRES 36 D 499 HIS ARG VAL ALA ALA GLY VAL GLU PHE ALA LYS SER LYS SEQRES 37 D 499 GLY TYR VAL GLN THR GLY ASP TYR CYS VAL VAL ILE HIS SEQRES 38 D 499 ALA ASP HIS LYS VAL LYS GLY TYR ALA ASN GLN THR ARG SEQRES 39 D 499 ILE LEU LEU VAL GLU SEQRES 1 A 499 MET SER GLN LEU ALA HIS ASN LEU THR LEU SER ILE PHE SEQRES 2 A 499 ASP PRO VAL ALA ASN TYR ARG ALA ALA ARG ILE ILE CYS SEQRES 3 A 499 THR ILE GLY PRO SER THR GLN SER VAL GLU ALA LEU LYS SEQRES 4 A 499 GLY LEU ILE GLN SER GLY MET SER VAL ALA ARG MET ASN SEQRES 5 A 499 PHE SER HIS GLY SER HIS GLU TYR HIS GLN THR THR ILE SEQRES 6 A 499 ASN ASN VAL ARG GLN ALA ALA ALA GLU LEU GLY VAL ASN SEQRES 7 A 499 ILE ALA ILE ALA LEU ASP THR LYS GLY PRO GLU ILE ARG SEQRES 8 A 499 THR GLY GLN PHE VAL GLY GLY ASP ALA VAL MET GLU ARG SEQRES 9 A 499 GLY ALA THR CYS TYR VAL THR THR ASP PRO ALA PHE ALA SEQRES 10 A 499 ASP LYS GLY THR LYS ASP LYS PHE TYR ILE ASP TYR GLN SEQRES 11 A 499 ASN LEU SER LYS VAL VAL ARG PRO GLY ASN TYR ILE TYR SEQRES 12 A 499 ILE ASP ASP GLY ILE LEU ILE LEU GLN VAL GLN SER HIS SEQRES 13 A 499 GLU ASP GLU GLN THR LEU GLU CYS THR VAL THR ASN SER SEQRES 14 A 499 HIS THR ILE SER ASP ARG ARG GLY VAL ASN LEU PRO GLY SEQRES 15 A 499 CYS ASP VAL ASP LEU PRO ALA VAL SER ALA LYS ASP ARG SEQRES 16 A 499 VAL ASP LEU GLN PHE GLY VAL GLU GLN GLY VAL ASP MET SEQRES 17 A 499 ILE PHE ALA SER PHE ILE ARG SER ALA GLU GLN VAL GLY SEQRES 18 A 499 ASP VAL ARG LYS ALA LEU GLY PRO LYS GLY ARG ASP ILE SEQRES 19 A 499 MET ILE ILE CYS LYS ILE GLU ASN HIS GLN GLY VAL GLN SEQRES 20 A 499 ASN ILE ASP SER ILE ILE GLU GLU SER ASP GLY ILE MET SEQRES 21 A 499 VAL ALA ARG GLY ASP LEU GLY VAL GLU ILE PRO ALA GLU SEQRES 22 A 499 LYS VAL VAL VAL ALA GLN LYS ILE LEU ILE SER LYS CYS SEQRES 23 A 499 ASN VAL ALA GLY LYS PRO VAL ILE CYS ALA THR GLN MET SEQRES 24 A 499 LEU GLU SER MET THR TYR ASN PRO ARG PRO THR ARG ALA SEQRES 25 A 499 GLU VAL SER ASP VAL ALA ASN ALA VAL PHE ASN GLY ALA SEQRES 26 A 499 ASP CYS VAL MET LEU SER GLY GLU THR ALA LYS GLY LYS SEQRES 27 A 499 TYR PRO ASN GLU VAL VAL GLN TYR MET ALA ARG ILE CYS SEQRES 28 A 499 LEU GLU ALA GLN SER ALA LEU ASN GLU TYR VAL PHE PHE SEQRES 29 A 499 ASN SER ILE LYS LYS LEU GLN HIS ILE PRO MET SER ALA SEQRES 30 A 499 ASP GLU ALA VAL CYS SER SER ALA VAL ASN SER VAL TYR SEQRES 31 A 499 GLU THR LYS ALA LYS ALA MET VAL VAL LEU SER ASN THR SEQRES 32 A 499 GLY ARG SER ALA ARG LEU VAL ALA LYS TYR ARG PRO ASN SEQRES 33 A 499 CYS PRO ILE VAL CYS VAL THR THR ARG LEU GLN THR CYS SEQRES 34 A 499 ARG GLN LEU ASN ILE THR GLN GLY VAL GLU SER VAL PHE SEQRES 35 A 499 PHE ASP ALA ASP LYS LEU GLY HIS ASP GLU GLY LYS GLU SEQRES 36 A 499 HIS ARG VAL ALA ALA GLY VAL GLU PHE ALA LYS SER LYS SEQRES 37 A 499 GLY TYR VAL GLN THR GLY ASP TYR CYS VAL VAL ILE HIS SEQRES 38 A 499 ALA ASP HIS LYS VAL LYS GLY TYR ALA ASN GLN THR ARG SEQRES 39 A 499 ILE LEU LEU VAL GLU HET S62 D 499 17 HET PO4 D 500 5 HET PO4 D 501 5 HET S62 A 499 17 HET PO4 A 500 5 HET PO4 A 501 5 HETNAM S62 1,3-BENZOTHIAZOLE-2,5-DISULFONIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 S62 2(C7 H5 N O6 S3) FORMUL 4 PO4 4(O4 P 3-) FORMUL 9 HOH *211(H2 O) HELIX 1 1 SER D 1 THR D 8 1 8 HELIX 2 2 SER D 33 GLY D 44 1 12 HELIX 3 3 SER D 56 GLY D 75 1 20 HELIX 4 4 PHE D 94 GLY D 96 5 3 HELIX 5 5 ASP D 112 ALA D 116 5 5 HELIX 6 6 ASN D 130 VAL D 135 1 6 HELIX 7 7 SER D 190 GLN D 203 1 14 HELIX 8 8 SER D 215 GLY D 227 1 13 HELIX 9 9 PRO D 228 ARG D 231 5 4 HELIX 10 10 ASN D 241 ASN D 247 1 7 HELIX 11 11 ASN D 247 SER D 255 1 9 HELIX 12 12 ARG D 262 ILE D 269 1 8 HELIX 13 13 PRO D 270 GLY D 289 1 20 HELIX 14 14 LEU D 299 TYR D 304 5 6 HELIX 15 15 THR D 309 GLY D 323 1 15 HELIX 16 16 SER D 330 LYS D 335 1 6 HELIX 17 17 TYR D 338 LEU D 357 1 20 HELIX 18 18 ASN D 358 LYS D 368 1 11 HELIX 19 19 SER D 375 LYS D 392 1 18 HELIX 20 20 GLY D 403 TYR D 412 1 10 HELIX 21 21 ARG D 424 LEU D 431 1 8 HELIX 22 22 ASN D 432 THR D 434 5 3 HELIX 23 23 ASP D 443 GLY D 448 1 6 HELIX 24 24 LYS D 453 LYS D 467 1 15 HELIX 25 25 SER A 1 THR A 8 1 8 HELIX 26 26 SER A 33 GLY A 44 1 12 HELIX 27 27 SER A 56 GLY A 75 1 20 HELIX 28 28 SER A 190 GLY A 204 1 15 HELIX 29 29 ALA A 216 LEU A 226 1 11 HELIX 30 30 GLY A 227 ARG A 231 5 5 HELIX 31 31 ASN A 241 ASN A 247 1 7 HELIX 32 32 ASN A 247 SER A 255 1 9 HELIX 33 33 ARG A 262 GLY A 266 1 5 HELIX 34 34 PRO A 270 GLY A 289 1 20 HELIX 35 35 LEU A 299 TYR A 304 5 6 HELIX 36 36 THR A 309 GLY A 323 1 15 HELIX 37 37 SER A 330 LYS A 335 1 6 HELIX 38 38 TYR A 338 LEU A 357 1 20 HELIX 39 39 ASN A 358 LYS A 368 1 11 HELIX 40 40 SER A 375 LYS A 392 1 18 HELIX 41 41 GLY A 403 TYR A 412 1 10 HELIX 42 42 ARG A 424 LEU A 431 1 8 HELIX 43 43 ASN A 432 THR A 434 5 3 HELIX 44 44 ASP A 443 GLY A 448 1 6 HELIX 45 45 LYS A 453 LYS A 467 1 15 SHEET 1 A 9 ARG D 22 THR D 26 0 SHEET 2 A 9 VAL D 47 ASN D 51 1 O ARG D 49 N CYS D 25 SHEET 3 A 9 ALA D 79 ASP D 83 1 O ALA D 79 N ALA D 48 SHEET 4 A 9 MET D 207 ALA D 210 1 O PHE D 209 N LEU D 82 SHEET 5 A 9 MET D 234 ILE D 239 1 O MET D 234 N ILE D 208 SHEET 6 A 9 ILE D 258 ALA D 261 1 O MET D 259 N ILE D 239 SHEET 7 A 9 VAL D 292 ALA D 295 1 O ILE D 293 N ILE D 258 SHEET 8 A 9 CYS D 326 LEU D 329 1 O CYS D 326 N CYS D 294 SHEET 9 A 9 ARG D 22 THR D 26 1 N ILE D 24 O LEU D 329 SHEET 1 B 2 ASP D 98 MET D 101 0 SHEET 2 B 2 HIS D 169 SER D 172 -1 O HIS D 169 N MET D 101 SHEET 1 C 6 LYS D 123 TYR D 125 0 SHEET 2 C 6 THR D 106 THR D 110 1 N TYR D 108 O PHE D 124 SHEET 3 C 6 THR D 160 VAL D 165 -1 O LEU D 161 N VAL D 109 SHEET 4 C 6 LEU D 148 HIS D 155 -1 N SER D 154 O GLU D 162 SHEET 5 C 6 TYR D 140 ILE D 143 -1 N ILE D 141 O LEU D 150 SHEET 6 C 6 VAL D 177 ASN D 178 -1 O ASN D 178 N TYR D 142 SHEET 1 D 5 VAL D 437 PHE D 441 0 SHEET 2 D 5 ILE D 418 THR D 422 1 N CYS D 420 O GLU D 438 SHEET 3 D 5 MET D 396 LEU D 399 1 N VAL D 398 O VAL D 421 SHEET 4 D 5 TYR D 475 HIS D 480 1 O VAL D 477 N VAL D 397 SHEET 5 D 5 GLN D 491 LEU D 496 -1 O LEU D 495 N CYS D 476 SHEET 1 E 9 ARG A 22 THR A 26 0 SHEET 2 E 9 MET A 45 ASN A 51 1 O ARG A 49 N CYS A 25 SHEET 3 E 9 ALA A 79 ASP A 83 1 O ALA A 79 N ALA A 48 SHEET 4 E 9 MET A 207 ALA A 210 1 O PHE A 209 N LEU A 82 SHEET 5 E 9 MET A 234 ILE A 239 1 O ILE A 236 N ILE A 208 SHEET 6 E 9 GLY A 257 ALA A 261 1 O MET A 259 N ILE A 239 SHEET 7 E 9 VAL A 292 ALA A 295 1 O ILE A 293 N VAL A 260 SHEET 8 E 9 CYS A 326 LEU A 329 1 O CYS A 326 N CYS A 294 SHEET 9 E 9 ARG A 22 THR A 26 1 N ILE A 24 O LEU A 329 SHEET 1 F 5 VAL A 437 PHE A 441 0 SHEET 2 F 5 ILE A 418 THR A 422 1 N CYS A 420 O GLU A 438 SHEET 3 F 5 MET A 396 LEU A 399 1 N VAL A 398 O VAL A 419 SHEET 4 F 5 TYR A 475 HIS A 480 1 O VAL A 477 N VAL A 397 SHEET 5 F 5 GLN A 491 LEU A 496 -1 O ARG A 493 N VAL A 478 CISPEP 1 ILE D 372 PRO D 373 0 10.60 CISPEP 2 ILE A 372 PRO A 373 0 5.56 SITE 1 AC1 9 THR D 26 PRO D 29 ARG D 49 ASN D 51 SITE 2 AC1 9 HIS D 54 SER D 330 GLY D 331 ALA D 334 SITE 3 AC1 9 HOH D 544 SITE 1 AC2 6 SER D 1 TYR D 360 VAL D 361 ASN D 364 SITE 2 AC2 6 HOH D 553 HOH D 599 SITE 1 AC3 6 SER D 400 ASN D 401 THR D 402 ARG D 404 SITE 2 AC3 6 SER D 405 ASP D 482 SITE 1 AC4 7 THR A 26 PRO A 29 ARG A 49 ASN A 51 SITE 2 AC4 7 SER A 330 GLY A 331 HOH A 564 SITE 1 AC5 6 SER A 1 TYR A 360 VAL A 361 ASN A 364 SITE 2 AC5 6 HOH A 557 HOH A 566 SITE 1 AC6 5 SER A 400 ASN A 401 THR A 402 ARG A 404 SITE 2 AC6 5 SER A 405 CRYST1 120.554 131.282 167.602 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008295 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005967 0.00000