HEADER TRANSFERASE 25-FEB-11 3QVF TITLE CRYSTAL STRUCTURE OF FOSFOMYCIN RESISTANCE KINASE FOMA FROM TITLE 2 STREPTOMYCES WEDMORENSIS COMPLEXED WITH MGADP AND FOSFOMYCIN VANADATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOMA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES WEDMORENSIS; SOURCE 3 ORGANISM_TAXID: 43759; SOURCE 4 GENE: FOMA, FOSFOMYCIN RESISTANCE KINASE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS FOSFOMYCIN, ANTIBIOTIC RESISTANCE, PHOSPHORYL TRANSFER, KINASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAKHOMOVA,S.G.BARTLETT,P.A.DOERNER,M.E.NEWCOMER REVDAT 4 13-SEP-23 3QVF 1 REMARK SEQADV LINK REVDAT 3 29-FEB-12 3QVF 1 JRNL REVDAT 2 27-JUL-11 3QVF 1 HEADER REVDAT 1 20-JUL-11 3QVF 0 JRNL AUTH S.PAKHOMOVA,S.G.BARTLETT,P.A.DOERNER,M.E.NEWCOMER JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO THE MECHANISM OF JRNL TITL 2 FOSFOMYCIN PHOSPHORYLATION BY FOSFOMYCIN RESISTANCE KINASE JRNL TITL 3 FOMA. JRNL REF BIOCHEMISTRY V. 50 6909 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21728358 JRNL DOI 10.1021/BI2004334 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 27413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 411 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1592 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.660 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2183 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1473 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2972 ; 2.002 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3560 ; 1.131 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 7.131 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;32.072 ;21.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 338 ;15.679 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.291 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2439 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 474 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1368 ; 1.168 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 565 ; 0.326 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2185 ; 2.002 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 815 ; 3.421 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 783 ; 4.792 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0840 31.9975 25.3976 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.1284 REMARK 3 T33: 0.1139 T12: 0.0219 REMARK 3 T13: -0.0338 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: 2.0614 L22: 2.3120 REMARK 3 L33: 1.7212 L12: 0.7086 REMARK 3 L13: -0.4332 L23: -1.1772 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: 0.1998 S13: -0.2063 REMARK 3 S21: -0.1767 S22: -0.0842 S23: 0.1600 REMARK 3 S31: 0.0473 S32: -0.2876 S33: -0.0264 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0839 31.5852 37.8443 REMARK 3 T TENSOR REMARK 3 T11: 0.0163 T22: 0.0347 REMARK 3 T33: 0.0651 T12: -0.0133 REMARK 3 T13: 0.0023 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.5436 L22: 0.9862 REMARK 3 L33: 1.5200 L12: -0.6992 REMARK 3 L13: 0.5583 L23: -0.1530 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.1059 S13: -0.0801 REMARK 3 S21: -0.0141 S22: 0.0115 S23: 0.0789 REMARK 3 S31: 0.0194 S32: -0.1914 S33: -0.0144 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2556 40.8174 29.2888 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.1424 REMARK 3 T33: 0.0841 T12: 0.0428 REMARK 3 T13: -0.0406 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.6209 L22: 1.4291 REMARK 3 L33: 3.2098 L12: 0.0468 REMARK 3 L13: -0.3949 L23: 0.4787 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: 0.1540 S13: -0.0248 REMARK 3 S21: -0.1333 S22: -0.1139 S23: 0.2604 REMARK 3 S31: -0.1119 S32: -0.5730 S33: 0.0284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CAMD REMARK 200 BEAMLINE : GCPCC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.38079 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29919 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 31.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.70500 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3D40 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG3350, 25% GLYCEROL, 0.1M MES, REMARK 280 10MM AD, 50MM MGCL2, 10MM FOSFOMYCIN, 10MM NAVO3, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.33333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.33333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO-FOLD AXIS: Y,X,-Z+1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 THR A 263 REMARK 465 ALA A 264 REMARK 465 SER A 265 REMARK 465 ALA A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 TRP A 207 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 207 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 226 O HOH A 374 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 155 CB VAL A 155 CG2 -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 10.42 -147.68 REMARK 500 TYR A 43 36.18 -88.12 REMARK 500 TYR A 43 57.56 -94.31 REMARK 500 ASP A 178 50.52 72.29 REMARK 500 ALA A 180 11.08 -62.55 REMARK 500 ASP A 183 -60.52 -155.83 REMARK 500 SER A 193 77.23 -153.99 REMARK 500 ALA A 212 -120.45 34.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A5000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 330 O REMARK 620 2 HOH A 357 O 89.5 REMARK 620 3 HOH A 375 O 92.4 100.9 REMARK 620 4 ADP A1260 O1B 102.5 90.3 161.5 REMARK 620 5 ADP A1260 O2A 93.6 175.1 82.8 85.3 REMARK 620 6 FV1 A4001 O3 171.8 87.4 80.8 85.2 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FV1 A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 5000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QUN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FOSFOMYCIN RESISTANCE KINASE FOMA FROM REMARK 900 STREPTOMYCES WEDMORENSIS COMPLEXED WITH MGATP REMARK 900 RELATED ID: 3QUO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FOSFOMYCIN RESISTANCE KINASE FOMA FROM REMARK 900 STREPTOMYCES WEDMORENSIS COMPLEXED WITH ATP AND FOSFOMYCIN REMARK 900 RELATED ID: 3QUR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FOSFOMYCIN RESISTANCE KINASE FOMA FROM REMARK 900 STREPTOMYCES WEDMORENSIS COMPLEXED WITH MGADP AND FOSFOMYCIN REMARK 900 MONOPHOSPHATE REMARK 900 RELATED ID: 3D40 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FOSFOMYCIN RESISTANCE KINASE FOMA FROM REMARK 900 STREPTOMYCES WEDMORENSIS COMPLEXED WITH DIPHOSPHATE REMARK 900 RELATED ID: 3D41 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FOSFOMYCIN RESISTANCE KINASE FOMA FROM REMARK 900 STREPTOMYCES WEDMORENSIS COMPLEXED WITH MGAMPPNP AND FOSFOMYCIN REMARK 900 RELATED ID: 3QVH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FOSFOMYCIN RESISTANCE KINASE FOMA FROM REMARK 900 STREPTOMYCES WEDMORENSIS COMPLEXED WITH ADP REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE DEPOSITED SEQUENCE UNPROT ENTRY Q56187 REMARK 999 IS WRONG AT POSITION 31 DBREF 3QVF A 1 266 UNP Q56187 Q56187_STRWE 1 266 SEQADV 3QVF MET A -19 UNP Q56187 EXPRESSION TAG SEQADV 3QVF GLY A -18 UNP Q56187 EXPRESSION TAG SEQADV 3QVF SER A -17 UNP Q56187 EXPRESSION TAG SEQADV 3QVF SER A -16 UNP Q56187 EXPRESSION TAG SEQADV 3QVF HIS A -15 UNP Q56187 EXPRESSION TAG SEQADV 3QVF HIS A -14 UNP Q56187 EXPRESSION TAG SEQADV 3QVF HIS A -13 UNP Q56187 EXPRESSION TAG SEQADV 3QVF HIS A -12 UNP Q56187 EXPRESSION TAG SEQADV 3QVF HIS A -11 UNP Q56187 EXPRESSION TAG SEQADV 3QVF HIS A -10 UNP Q56187 EXPRESSION TAG SEQADV 3QVF SER A -9 UNP Q56187 EXPRESSION TAG SEQADV 3QVF SER A -8 UNP Q56187 EXPRESSION TAG SEQADV 3QVF GLY A -7 UNP Q56187 EXPRESSION TAG SEQADV 3QVF LEU A -6 UNP Q56187 EXPRESSION TAG SEQADV 3QVF VAL A -5 UNP Q56187 EXPRESSION TAG SEQADV 3QVF PRO A -4 UNP Q56187 EXPRESSION TAG SEQADV 3QVF ARG A -3 UNP Q56187 EXPRESSION TAG SEQADV 3QVF GLY A -2 UNP Q56187 EXPRESSION TAG SEQADV 3QVF SER A -1 UNP Q56187 EXPRESSION TAG SEQADV 3QVF HIS A 0 UNP Q56187 EXPRESSION TAG SEQADV 3QVF ARG A 31 UNP Q56187 PRO 31 SEE REMARK 999 SEQRES 1 A 286 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 286 LEU VAL PRO ARG GLY SER HIS MET THR PRO ASP PHE LEU SEQRES 3 A 286 ALA ILE LYS VAL GLY GLY SER LEU PHE SER ARG LYS ASP SEQRES 4 A 286 GLU PRO GLY SER LEU ASP ASP ASP ALA VAL THR ARG PHE SEQRES 5 A 286 ALA ARG ASN PHE ALA ARG LEU ALA GLU THR TYR ARG GLY SEQRES 6 A 286 ARG MET VAL LEU ILE SER GLY GLY GLY ALA PHE GLY HIS SEQRES 7 A 286 GLY ALA ILE ARG ASP HIS ASP SER THR HIS ALA PHE SER SEQRES 8 A 286 LEU ALA GLY LEU THR GLU ALA THR PHE GLU VAL LYS LYS SEQRES 9 A 286 ARG TRP ALA GLU LYS LEU ARG GLY ILE GLY VAL ASP ALA SEQRES 10 A 286 PHE PRO LEU GLN LEU ALA ALA MET CYS THR LEU ARG ASN SEQRES 11 A 286 GLY ILE PRO GLN LEU ARG SER GLU VAL LEU ARG ASP VAL SEQRES 12 A 286 LEU ASP HIS GLY ALA LEU PRO VAL LEU ALA GLY ASP ALA SEQRES 13 A 286 LEU PHE ASP GLU HIS GLY LYS LEU TRP ALA PHE SER SER SEQRES 14 A 286 ASP ARG VAL PRO GLU VAL LEU LEU PRO MET VAL GLU GLY SEQRES 15 A 286 ARG LEU ARG VAL VAL THR LEU THR ASP VAL ASP GLY ILE SEQRES 16 A 286 VAL THR ASP GLY ALA GLY GLY ASP THR ILE LEU PRO GLU SEQRES 17 A 286 VAL ASP ALA ARG SER PRO GLU GLN ALA TYR ALA ALA LEU SEQRES 18 A 286 TRP GLY SER SER GLU TRP ASP ALA THR GLY ALA MET HIS SEQRES 19 A 286 THR LYS LEU ASP ALA LEU VAL THR CYS ALA ARG ARG GLY SEQRES 20 A 286 ALA GLU CYS PHE ILE MET ARG GLY ASP PRO GLY SER ASP SEQRES 21 A 286 LEU GLU PHE LEU THR ALA PRO PHE SER SER TRP PRO ALA SEQRES 22 A 286 HIS VAL ARG SER THR ARG ILE THR THR THR ALA SER ALA HET ADP A1260 27 HET FV1 A4001 12 HET MG A5000 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM FV1 DIHYDROXY{[(2R,3S)-3-METHYLOXIRAN-2-YL]PHOSPHONATO- HETNAM 2 FV1 KAPPAO}OXOVANADIUM HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 FV1 C3 H8 O7 P V FORMUL 4 MG MG 2+ FORMUL 5 HOH *136(H2 O) HELIX 1 1 GLY A 12 PHE A 15 5 4 HELIX 2 2 ASP A 25 TYR A 43 1 19 HELIX 3 3 GLY A 53 ASP A 63 1 11 HELIX 4 4 HIS A 68 LEU A 72 5 5 HELIX 5 5 ALA A 73 ILE A 93 1 21 HELIX 6 6 GLN A 101 ALA A 104 5 4 HELIX 7 7 GLU A 118 HIS A 126 1 9 HELIX 8 8 SER A 148 ASP A 150 5 3 HELIX 9 9 ARG A 151 LEU A 157 1 7 HELIX 10 10 PRO A 194 LEU A 201 1 8 HELIX 11 11 GLY A 211 ARG A 226 1 16 HELIX 12 12 LEU A 241 ALA A 246 5 6 HELIX 13 13 PRO A 247 TRP A 251 5 5 SHEET 1 A 8 ALA A 97 PRO A 99 0 SHEET 2 A 8 LEU A 129 ALA A 133 1 O VAL A 131 N PHE A 98 SHEET 3 A 8 MET A 47 SER A 51 1 N LEU A 49 O LEU A 132 SHEET 4 A 8 PHE A 5 VAL A 10 1 N ILE A 8 O ILE A 50 SHEET 5 A 8 LEU A 164 THR A 170 1 O LEU A 169 N LYS A 9 SHEET 6 A 8 GLU A 229 ARG A 234 1 O PHE A 231 N THR A 168 SHEET 7 A 8 THR A 258 THR A 261 -1 O ILE A 260 N CYS A 230 SHEET 8 A 8 GLU A 188 ASP A 190 1 N VAL A 189 O ARG A 259 SHEET 1 B 2 CYS A 106 ARG A 109 0 SHEET 2 B 2 ILE A 112 LEU A 115 -1 O ILE A 112 N ARG A 109 SHEET 1 C 2 ASP A 135 PHE A 138 0 SHEET 2 C 2 LEU A 144 PHE A 147 -1 O PHE A 147 N ASP A 135 SHEET 1 D 2 VAL A 176 THR A 177 0 SHEET 2 D 2 THR A 184 ILE A 185 -1 O THR A 184 N THR A 177 LINK O HOH A 330 MG MG A5000 1555 1555 2.08 LINK O HOH A 357 MG MG A5000 1555 1555 1.96 LINK O HOH A 375 MG MG A5000 1555 1555 2.02 LINK O1B ADP A1260 MG MG A5000 1555 1555 2.12 LINK O2A ADP A1260 MG MG A5000 1555 1555 2.15 LINK O3 FV1 A4001 MG MG A5000 1555 1555 2.36 SITE 1 AC1 26 LYS A 9 GLY A 11 GLY A 12 SER A 13 SITE 2 AC1 26 LYS A 18 THR A 170 ASP A 171 VAL A 172 SITE 3 AC1 26 GLY A 174 ILE A 175 VAL A 176 ALA A 200 SITE 4 AC1 26 LEU A 201 TRP A 202 ASP A 208 ALA A 212 SITE 5 AC1 26 MET A 213 LYS A 216 HOH A 279 HOH A 298 SITE 6 AC1 26 HOH A 330 HOH A 350 HOH A 357 HOH A 375 SITE 7 AC1 26 FV1 A4001 MG A5000 SITE 1 AC2 19 LYS A 9 GLY A 11 GLY A 12 LYS A 18 SITE 2 AC2 19 GLY A 52 GLY A 53 GLY A 54 GLY A 57 SITE 3 AC2 19 HIS A 58 PHE A 147 SER A 148 SER A 149 SITE 4 AC2 19 ASP A 208 THR A 210 HOH A 287 HOH A 357 SITE 5 AC2 19 HOH A 375 ADP A1260 MG A5000 SITE 1 AC3 6 ASP A 150 HOH A 330 HOH A 357 HOH A 375 SITE 2 AC3 6 ADP A1260 FV1 A4001 CRYST1 87.380 87.380 79.000 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011444 0.006607 0.000000 0.00000 SCALE2 0.000000 0.013215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012658 0.00000