data_3QVO # _entry.id 3QVO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.299 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3QVO RCSB RCSB064161 WWPDB D_1000064161 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc27541 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3QVO _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-02-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Xu, X.' 2 'Cui, H.' 3 'Edwards, A.' 4 'Savchenko, A.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'Structure of a Rossmann-fold NAD(P)-binding family protein from Shigella flexneri.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cuff, M.E.' 1 ? primary 'Xu, X.' 2 ? primary 'Cui, H.' 3 ? primary 'Edwards, A.' 4 ? primary 'Savchenko, A.' 5 ? primary 'Joachimiak, A.' 6 ? # _cell.entry_id 3QVO _cell.length_a 73.524 _cell.length_b 73.524 _cell.length_c 130.246 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QVO _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NmrA family protein' 26416.154 1 ? ? ? ? 2 non-polymer syn '5-MERCAPTO-2-NITRO-BENZOIC ACID' 199.184 1 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rossman-fold NAD(P)-binding protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSSGRENLYFQGH(MSE)KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQII (MSE)GDVLNHAALKQA(MSE)QGQDIVYANLTGEDLDIQANSVIAA(MSE)KACDVKRLIFVLSLGIYDEVPGKFVEWN NAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIG INQPGTDGDKPFF(MSE)GS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHA ALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEA SGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQPGTDGDKPFFMGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc27541 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 ARG n 1 15 GLU n 1 16 ASN n 1 17 LEU n 1 18 TYR n 1 19 PHE n 1 20 GLN n 1 21 GLY n 1 22 HIS n 1 23 MSE n 1 24 LYS n 1 25 ASN n 1 26 VAL n 1 27 LEU n 1 28 ILE n 1 29 LEU n 1 30 GLY n 1 31 ALA n 1 32 GLY n 1 33 GLY n 1 34 GLN n 1 35 ILE n 1 36 ALA n 1 37 ARG n 1 38 HIS n 1 39 VAL n 1 40 ILE n 1 41 ASN n 1 42 GLN n 1 43 LEU n 1 44 ALA n 1 45 ASP n 1 46 LYS n 1 47 GLN n 1 48 THR n 1 49 ILE n 1 50 LYS n 1 51 GLN n 1 52 THR n 1 53 LEU n 1 54 PHE n 1 55 ALA n 1 56 ARG n 1 57 GLN n 1 58 PRO n 1 59 ALA n 1 60 LYS n 1 61 ILE n 1 62 HIS n 1 63 LYS n 1 64 PRO n 1 65 TYR n 1 66 PRO n 1 67 THR n 1 68 ASN n 1 69 SER n 1 70 GLN n 1 71 ILE n 1 72 ILE n 1 73 MSE n 1 74 GLY n 1 75 ASP n 1 76 VAL n 1 77 LEU n 1 78 ASN n 1 79 HIS n 1 80 ALA n 1 81 ALA n 1 82 LEU n 1 83 LYS n 1 84 GLN n 1 85 ALA n 1 86 MSE n 1 87 GLN n 1 88 GLY n 1 89 GLN n 1 90 ASP n 1 91 ILE n 1 92 VAL n 1 93 TYR n 1 94 ALA n 1 95 ASN n 1 96 LEU n 1 97 THR n 1 98 GLY n 1 99 GLU n 1 100 ASP n 1 101 LEU n 1 102 ASP n 1 103 ILE n 1 104 GLN n 1 105 ALA n 1 106 ASN n 1 107 SER n 1 108 VAL n 1 109 ILE n 1 110 ALA n 1 111 ALA n 1 112 MSE n 1 113 LYS n 1 114 ALA n 1 115 CYS n 1 116 ASP n 1 117 VAL n 1 118 LYS n 1 119 ARG n 1 120 LEU n 1 121 ILE n 1 122 PHE n 1 123 VAL n 1 124 LEU n 1 125 SER n 1 126 LEU n 1 127 GLY n 1 128 ILE n 1 129 TYR n 1 130 ASP n 1 131 GLU n 1 132 VAL n 1 133 PRO n 1 134 GLY n 1 135 LYS n 1 136 PHE n 1 137 VAL n 1 138 GLU n 1 139 TRP n 1 140 ASN n 1 141 ASN n 1 142 ALA n 1 143 VAL n 1 144 ILE n 1 145 GLY n 1 146 GLU n 1 147 PRO n 1 148 LEU n 1 149 LYS n 1 150 PRO n 1 151 PHE n 1 152 ARG n 1 153 ARG n 1 154 ALA n 1 155 ALA n 1 156 ASP n 1 157 ALA n 1 158 ILE n 1 159 GLU n 1 160 ALA n 1 161 SER n 1 162 GLY n 1 163 LEU n 1 164 GLU n 1 165 TYR n 1 166 THR n 1 167 ILE n 1 168 LEU n 1 169 ARG n 1 170 PRO n 1 171 ALA n 1 172 TRP n 1 173 LEU n 1 174 THR n 1 175 ASP n 1 176 GLU n 1 177 ASP n 1 178 ILE n 1 179 ILE n 1 180 ASP n 1 181 TYR n 1 182 GLU n 1 183 LEU n 1 184 THR n 1 185 SER n 1 186 ARG n 1 187 ASN n 1 188 GLU n 1 189 PRO n 1 190 PHE n 1 191 LYS n 1 192 GLY n 1 193 THR n 1 194 ILE n 1 195 VAL n 1 196 SER n 1 197 ARG n 1 198 LYS n 1 199 SER n 1 200 VAL n 1 201 ALA n 1 202 ALA n 1 203 LEU n 1 204 ILE n 1 205 THR n 1 206 ASP n 1 207 ILE n 1 208 ILE n 1 209 ASP n 1 210 LYS n 1 211 PRO n 1 212 GLU n 1 213 LYS n 1 214 HIS n 1 215 ILE n 1 216 GLY n 1 217 GLU n 1 218 ASN n 1 219 ILE n 1 220 GLY n 1 221 ILE n 1 222 ASN n 1 223 GLN n 1 224 PRO n 1 225 GLY n 1 226 THR n 1 227 ASP n 1 228 GLY n 1 229 ASP n 1 230 LYS n 1 231 PRO n 1 232 PHE n 1 233 PHE n 1 234 MSE n 1 235 GLY n 1 236 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'S1416, SF2457T_2192' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 2457T _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shigella flexneri 2a' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 198215 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name p11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code E3Y2F5_SHIFL _struct_ref.pdbx_db_accession E3Y2F5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLD IQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYE LTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQPGTDGDKPFF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QVO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 233 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession E3Y2F5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 211 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 211 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QVO MSE A 1 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -21 1 1 3QVO GLY A 2 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -20 2 1 3QVO SER A 3 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -19 3 1 3QVO SER A 4 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -18 4 1 3QVO HIS A 5 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -17 5 1 3QVO HIS A 6 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -16 6 1 3QVO HIS A 7 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -15 7 1 3QVO HIS A 8 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -14 8 1 3QVO HIS A 9 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -13 9 1 3QVO HIS A 10 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -12 10 1 3QVO SER A 11 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -11 11 1 3QVO SER A 12 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -10 12 1 3QVO GLY A 13 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -9 13 1 3QVO ARG A 14 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -8 14 1 3QVO GLU A 15 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -7 15 1 3QVO ASN A 16 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -6 16 1 3QVO LEU A 17 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -5 17 1 3QVO TYR A 18 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -4 18 1 3QVO PHE A 19 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -3 19 1 3QVO GLN A 20 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -2 20 1 3QVO GLY A 21 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' -1 21 1 3QVO HIS A 22 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' 0 22 1 3QVO MSE A 234 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' 212 23 1 3QVO GLY A 235 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' 213 24 1 3QVO SER A 236 ? UNP E3Y2F5 ? ? 'EXPRESSION TAG' 214 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MNB non-polymer . '5-MERCAPTO-2-NITRO-BENZOIC ACID' ? 'C7 H5 N O4 S' 199.184 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QVO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.34 _exptl_crystal.density_percent_sol 63.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1M potassium/sodium phosphate pH 6.9, 1.25mM DNTB, 15% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 294K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-04-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97953 1.0 2 0.97940 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97953, 0.97940' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3QVO _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.300 _reflns.number_obs 16455 _reflns.number_all 16455 _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.900 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.600 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 2.300 2.340 100.000 0.645 ? ? 10.700 ? ? ? ? ? ? 1 2 2.340 2.380 100.000 0.537 ? ? 11.200 ? ? ? ? ? ? 1 3 2.380 2.430 100.000 0.456 ? ? 11.800 ? ? ? ? ? ? 1 4 2.430 2.480 100.000 0.428 ? ? 11.900 ? ? ? ? ? ? 1 5 2.480 2.530 100.000 0.368 ? ? 11.900 ? ? ? ? ? ? 1 6 2.530 2.590 100.000 0.325 ? ? 12.100 ? ? ? ? ? ? 1 7 2.590 2.660 100.000 0.269 ? ? 12.000 ? ? ? ? ? ? 1 8 2.660 2.730 100.000 0.216 ? ? 11.900 ? ? ? ? ? ? 1 9 2.730 2.810 100.000 0.208 ? ? 12.000 ? ? ? ? ? ? 1 10 2.810 2.900 100.000 0.168 ? ? 11.900 ? ? ? ? ? ? 1 11 2.900 3.000 100.000 0.131 ? ? 11.900 ? ? ? ? ? ? 1 12 3.000 3.120 100.000 0.111 ? ? 11.800 ? ? ? ? ? ? 1 13 3.120 3.260 100.000 0.099 ? ? 11.800 ? ? ? ? ? ? 1 14 3.260 3.440 100.000 0.084 ? ? 11.900 ? ? ? ? ? ? 1 15 3.440 3.650 100.000 0.078 ? ? 11.700 ? ? ? ? ? ? 1 16 3.650 3.930 99.900 0.071 ? ? 11.600 ? ? ? ? ? ? 1 17 3.930 4.330 99.600 0.076 ? ? 11.500 ? ? ? ? ? ? 1 18 4.330 4.950 99.600 0.075 ? ? 11.200 ? ? ? ? ? ? 1 19 4.950 6.240 99.700 0.065 ? ? 10.900 ? ? ? ? ? ? 1 20 6.240 50.000 91.500 0.061 ? ? 9.700 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3QVO _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15584 _refine.ls_number_reflns_all 15584 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.76 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.44 _refine.ls_R_factor_obs 0.21652 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21481 _refine.ls_R_factor_R_free 0.25075 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 831 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 56.042 _refine.aniso_B[1][1] 2.63 _refine.aniso_B[2][2] 2.63 _refine.aniso_B[3][3] -5.27 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.211 _refine.pdbx_overall_ESU_R_Free 0.189 _refine.overall_SU_ML 0.135 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.962 _refine.overall_SU_R_Cruickshank_DPI 0.2080 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1508 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 1596 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 36.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1560 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1043 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.621 1.978 ? 2116 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.884 3.001 ? 2564 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.182 5.000 ? 197 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.747 25.455 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.586 15.000 ? 274 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.397 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.095 0.200 ? 243 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.021 ? 1728 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 278 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.814 1.500 ? 983 'X-RAY DIFFRACTION' ? r_mcbond_other 0.189 1.500 ? 398 'X-RAY DIFFRACTION' ? r_mcangle_it 1.544 2.000 ? 1585 'X-RAY DIFFRACTION' ? r_scbond_it 2.702 3.000 ? 577 'X-RAY DIFFRACTION' ? r_scangle_it 4.469 4.500 ? 530 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.302 _refine_ls_shell.d_res_low 2.361 _refine_ls_shell.number_reflns_R_work 1111 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 99.41 _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3QVO _struct.title 'Structure of a Rossmann-fold NAD(P)-binding family protein from Shigella flexneri.' _struct.pdbx_descriptor 'NmrA family protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QVO _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 33 ? ALA A 44 ? GLY A 11 ALA A 22 1 ? 12 HELX_P HELX_P2 2 GLN A 57 ? ILE A 61 ? GLN A 35 ILE A 39 5 ? 5 HELX_P HELX_P3 3 ASN A 78 ? GLN A 87 ? ASN A 56 GLN A 65 1 ? 10 HELX_P HELX_P4 4 ASP A 100 ? CYS A 115 ? ASP A 78 CYS A 93 1 ? 16 HELX_P HELX_P5 5 GLY A 145 ? PRO A 147 ? GLY A 123 PRO A 125 5 ? 3 HELX_P HELX_P6 6 LEU A 148 ? ALA A 160 ? LEU A 126 ALA A 138 1 ? 13 HELX_P HELX_P7 7 ARG A 197 ? LYS A 210 ? ARG A 175 LYS A 188 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 22 C ? ? ? 1_555 A MSE 23 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale ? ? A MSE 23 C ? ? ? 1_555 A LYS 24 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.326 ? covale3 covale ? ? A ILE 72 C ? ? ? 1_555 A MSE 73 N ? ? A ILE 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 73 C ? ? ? 1_555 A GLY 74 N ? ? A MSE 51 A GLY 52 1_555 ? ? ? ? ? ? ? 1.317 ? covale5 covale ? ? A ALA 85 C ? ? ? 1_555 A MSE 86 N ? ? A ALA 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.321 ? covale6 covale ? ? A MSE 86 C ? ? ? 1_555 A GLN 87 N ? ? A MSE 64 A GLN 65 1_555 ? ? ? ? ? ? ? 1.321 ? covale7 covale ? ? A ALA 111 C ? ? ? 1_555 A MSE 112 N ? ? A ALA 89 A MSE 90 1_555 ? ? ? ? ? ? ? 1.309 ? covale8 covale ? ? A MSE 112 C ? ? ? 1_555 A LYS 113 N ? ? A MSE 90 A LYS 91 1_555 ? ? ? ? ? ? ? 1.338 ? covale9 covale ? ? A PHE 233 C ? ? ? 1_555 A MSE 234 N ? ? A PHE 211 A MSE 212 1_555 ? ? ? ? ? ? ? 1.339 ? covale10 covale ? ? A CYS 115 SG ? ? ? 1_555 B MNB . S5 ? ? A CYS 93 A MNB 215 1_555 ? ? ? ? ? ? ? 2.024 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 63 A . ? LYS 41 A PRO 64 A ? PRO 42 A 1 -25.60 2 LYS 230 A . ? LYS 208 A PRO 231 A ? PRO 209 A 1 -1.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? anti-parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 69 ? MSE A 73 ? SER A 47 MSE A 51 A 2 ILE A 49 ? ALA A 55 ? ILE A 27 ALA A 33 A 3 LYS A 24 ? LEU A 29 ? LYS A 2 LEU A 7 A 4 ILE A 91 ? ASN A 95 ? ILE A 69 ASN A 73 A 5 ARG A 119 ? VAL A 123 ? ARG A 97 VAL A 101 A 6 GLU A 164 ? PRO A 170 ? GLU A 142 PRO A 148 A 7 GLU A 217 ? ASN A 222 ? GLU A 195 ASN A 200 A 8 GLU A 182 ? THR A 184 ? GLU A 160 THR A 162 B 1 TRP A 172 ? THR A 174 ? TRP A 150 THR A 152 B 2 ILE A 194 ? SER A 196 ? ILE A 172 SER A 174 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 70 ? O GLN A 48 N LEU A 53 ? N LEU A 31 A 2 3 O THR A 52 ? O THR A 30 N VAL A 26 ? N VAL A 4 A 3 4 N LEU A 27 ? N LEU A 5 O TYR A 93 ? O TYR A 71 A 4 5 N VAL A 92 ? N VAL A 70 O ILE A 121 ? O ILE A 99 A 5 6 N PHE A 122 ? N PHE A 100 O LEU A 168 ? O LEU A 146 A 6 7 N ARG A 169 ? N ARG A 147 O ILE A 219 ? O ILE A 197 A 7 8 O GLY A 220 ? O GLY A 198 N THR A 184 ? N THR A 162 B 1 2 N TRP A 172 ? N TRP A 150 O VAL A 195 ? O VAL A 173 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE MNB A 215' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HIS A 79 ? HIS A 57 . ? 5_555 ? 2 AC1 8 GLN A 87 ? GLN A 65 . ? 1_555 ? 3 AC1 8 ASN A 106 ? ASN A 84 . ? 5_555 ? 4 AC1 8 SER A 107 ? SER A 85 . ? 5_555 ? 5 AC1 8 ALA A 110 ? ALA A 88 . ? 5_555 ? 6 AC1 8 CYS A 115 ? CYS A 93 . ? 1_555 ? 7 AC1 8 HOH C . ? HOH A 232 . ? 5_555 ? 8 AC1 8 HOH C . ? HOH A 236 . ? 5_555 ? # _atom_sites.entry_id 3QVO _atom_sites.fract_transf_matrix[1][1] 0.013601 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013601 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007678 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 SER 3 -19 ? ? ? A . n A 1 4 SER 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 SER 11 -11 ? ? ? A . n A 1 12 SER 12 -10 ? ? ? A . n A 1 13 GLY 13 -9 ? ? ? A . n A 1 14 ARG 14 -8 ? ? ? A . n A 1 15 GLU 15 -7 ? ? ? A . n A 1 16 ASN 16 -6 ? ? ? A . n A 1 17 LEU 17 -5 ? ? ? A . n A 1 18 TYR 18 -4 ? ? ? A . n A 1 19 PHE 19 -3 ? ? ? A . n A 1 20 GLN 20 -2 ? ? ? A . n A 1 21 GLY 21 -1 ? ? ? A . n A 1 22 HIS 22 0 0 HIS HIS A . n A 1 23 MSE 23 1 1 MSE MSE A . n A 1 24 LYS 24 2 2 LYS LYS A . n A 1 25 ASN 25 3 3 ASN ASN A . n A 1 26 VAL 26 4 4 VAL VAL A . n A 1 27 LEU 27 5 5 LEU LEU A . n A 1 28 ILE 28 6 6 ILE ILE A . n A 1 29 LEU 29 7 7 LEU LEU A . n A 1 30 GLY 30 8 8 GLY GLY A . n A 1 31 ALA 31 9 9 ALA ALA A . n A 1 32 GLY 32 10 10 GLY GLY A . n A 1 33 GLY 33 11 11 GLY GLY A . n A 1 34 GLN 34 12 12 GLN GLN A . n A 1 35 ILE 35 13 13 ILE ILE A . n A 1 36 ALA 36 14 14 ALA ALA A . n A 1 37 ARG 37 15 15 ARG ARG A . n A 1 38 HIS 38 16 16 HIS HIS A . n A 1 39 VAL 39 17 17 VAL VAL A . n A 1 40 ILE 40 18 18 ILE ILE A . n A 1 41 ASN 41 19 19 ASN ASN A . n A 1 42 GLN 42 20 20 GLN GLN A . n A 1 43 LEU 43 21 21 LEU LEU A . n A 1 44 ALA 44 22 22 ALA ALA A . n A 1 45 ASP 45 23 23 ASP ASP A . n A 1 46 LYS 46 24 24 LYS LYS A . n A 1 47 GLN 47 25 25 GLN GLN A . n A 1 48 THR 48 26 26 THR THR A . n A 1 49 ILE 49 27 27 ILE ILE A . n A 1 50 LYS 50 28 28 LYS LYS A . n A 1 51 GLN 51 29 29 GLN GLN A . n A 1 52 THR 52 30 30 THR THR A . n A 1 53 LEU 53 31 31 LEU LEU A . n A 1 54 PHE 54 32 32 PHE PHE A . n A 1 55 ALA 55 33 33 ALA ALA A . n A 1 56 ARG 56 34 34 ARG ARG A . n A 1 57 GLN 57 35 35 GLN GLN A . n A 1 58 PRO 58 36 36 PRO PRO A . n A 1 59 ALA 59 37 37 ALA ALA A . n A 1 60 LYS 60 38 38 LYS LYS A . n A 1 61 ILE 61 39 39 ILE ILE A . n A 1 62 HIS 62 40 40 HIS HIS A . n A 1 63 LYS 63 41 41 LYS LYS A . n A 1 64 PRO 64 42 42 PRO PRO A . n A 1 65 TYR 65 43 43 TYR TYR A . n A 1 66 PRO 66 44 44 PRO PRO A . n A 1 67 THR 67 45 45 THR THR A . n A 1 68 ASN 68 46 46 ASN ASN A . n A 1 69 SER 69 47 47 SER SER A . n A 1 70 GLN 70 48 48 GLN GLN A . n A 1 71 ILE 71 49 49 ILE ILE A . n A 1 72 ILE 72 50 50 ILE ILE A . n A 1 73 MSE 73 51 51 MSE MSE A . n A 1 74 GLY 74 52 52 GLY GLY A . n A 1 75 ASP 75 53 53 ASP ASP A . n A 1 76 VAL 76 54 54 VAL VAL A . n A 1 77 LEU 77 55 55 LEU LEU A . n A 1 78 ASN 78 56 56 ASN ASN A . n A 1 79 HIS 79 57 57 HIS HIS A . n A 1 80 ALA 80 58 58 ALA ALA A . n A 1 81 ALA 81 59 59 ALA ALA A . n A 1 82 LEU 82 60 60 LEU LEU A . n A 1 83 LYS 83 61 61 LYS LYS A . n A 1 84 GLN 84 62 62 GLN GLN A . n A 1 85 ALA 85 63 63 ALA ALA A . n A 1 86 MSE 86 64 64 MSE MSE A . n A 1 87 GLN 87 65 65 GLN GLN A . n A 1 88 GLY 88 66 66 GLY GLY A . n A 1 89 GLN 89 67 67 GLN GLN A . n A 1 90 ASP 90 68 68 ASP ASP A . n A 1 91 ILE 91 69 69 ILE ILE A . n A 1 92 VAL 92 70 70 VAL VAL A . n A 1 93 TYR 93 71 71 TYR TYR A . n A 1 94 ALA 94 72 72 ALA ALA A . n A 1 95 ASN 95 73 73 ASN ASN A . n A 1 96 LEU 96 74 74 LEU LEU A . n A 1 97 THR 97 75 75 THR THR A . n A 1 98 GLY 98 76 76 GLY GLY A . n A 1 99 GLU 99 77 77 GLU GLU A . n A 1 100 ASP 100 78 78 ASP ASP A . n A 1 101 LEU 101 79 79 LEU LEU A . n A 1 102 ASP 102 80 80 ASP ASP A . n A 1 103 ILE 103 81 81 ILE ILE A . n A 1 104 GLN 104 82 82 GLN GLN A . n A 1 105 ALA 105 83 83 ALA ALA A . n A 1 106 ASN 106 84 84 ASN ASN A . n A 1 107 SER 107 85 85 SER SER A . n A 1 108 VAL 108 86 86 VAL VAL A . n A 1 109 ILE 109 87 87 ILE ILE A . n A 1 110 ALA 110 88 88 ALA ALA A . n A 1 111 ALA 111 89 89 ALA ALA A . n A 1 112 MSE 112 90 90 MSE MSE A . n A 1 113 LYS 113 91 91 LYS LYS A . n A 1 114 ALA 114 92 92 ALA ALA A . n A 1 115 CYS 115 93 93 CYS CYS A . n A 1 116 ASP 116 94 94 ASP ASP A . n A 1 117 VAL 117 95 95 VAL VAL A . n A 1 118 LYS 118 96 96 LYS LYS A . n A 1 119 ARG 119 97 97 ARG ARG A . n A 1 120 LEU 120 98 98 LEU LEU A . n A 1 121 ILE 121 99 99 ILE ILE A . n A 1 122 PHE 122 100 100 PHE PHE A . n A 1 123 VAL 123 101 101 VAL VAL A . n A 1 124 LEU 124 102 102 LEU LEU A . n A 1 125 SER 125 103 103 SER SER A . n A 1 126 LEU 126 104 104 LEU LEU A . n A 1 127 GLY 127 105 105 GLY GLY A . n A 1 128 ILE 128 106 ? ? ? A . n A 1 129 TYR 129 107 ? ? ? A . n A 1 130 ASP 130 108 ? ? ? A . n A 1 131 GLU 131 109 ? ? ? A . n A 1 132 VAL 132 110 ? ? ? A . n A 1 133 PRO 133 111 ? ? ? A . n A 1 134 GLY 134 112 ? ? ? A . n A 1 135 LYS 135 113 ? ? ? A . n A 1 136 PHE 136 114 ? ? ? A . n A 1 137 VAL 137 115 ? ? ? A . n A 1 138 GLU 138 116 ? ? ? A . n A 1 139 TRP 139 117 ? ? ? A . n A 1 140 ASN 140 118 ? ? ? A . n A 1 141 ASN 141 119 ? ? ? A . n A 1 142 ALA 142 120 ? ? ? A . n A 1 143 VAL 143 121 ? ? ? A . n A 1 144 ILE 144 122 122 ILE ILE A . n A 1 145 GLY 145 123 123 GLY GLY A . n A 1 146 GLU 146 124 124 GLU GLU A . n A 1 147 PRO 147 125 125 PRO PRO A . n A 1 148 LEU 148 126 126 LEU LEU A . n A 1 149 LYS 149 127 127 LYS LYS A . n A 1 150 PRO 150 128 128 PRO PRO A . n A 1 151 PHE 151 129 129 PHE PHE A . n A 1 152 ARG 152 130 130 ARG ARG A . n A 1 153 ARG 153 131 131 ARG ARG A . n A 1 154 ALA 154 132 132 ALA ALA A . n A 1 155 ALA 155 133 133 ALA ALA A . n A 1 156 ASP 156 134 134 ASP ASP A . n A 1 157 ALA 157 135 135 ALA ALA A . n A 1 158 ILE 158 136 136 ILE ILE A . n A 1 159 GLU 159 137 137 GLU GLU A . n A 1 160 ALA 160 138 138 ALA ALA A . n A 1 161 SER 161 139 139 SER SER A . n A 1 162 GLY 162 140 140 GLY GLY A . n A 1 163 LEU 163 141 141 LEU LEU A . n A 1 164 GLU 164 142 142 GLU GLU A . n A 1 165 TYR 165 143 143 TYR TYR A . n A 1 166 THR 166 144 144 THR THR A . n A 1 167 ILE 167 145 145 ILE ILE A . n A 1 168 LEU 168 146 146 LEU LEU A . n A 1 169 ARG 169 147 147 ARG ARG A . n A 1 170 PRO 170 148 148 PRO PRO A . n A 1 171 ALA 171 149 149 ALA ALA A . n A 1 172 TRP 172 150 150 TRP TRP A . n A 1 173 LEU 173 151 151 LEU LEU A . n A 1 174 THR 174 152 152 THR THR A . n A 1 175 ASP 175 153 153 ASP ASP A . n A 1 176 GLU 176 154 154 GLU GLU A . n A 1 177 ASP 177 155 155 ASP ASP A . n A 1 178 ILE 178 156 156 ILE ILE A . n A 1 179 ILE 179 157 157 ILE ILE A . n A 1 180 ASP 180 158 158 ASP ASP A . n A 1 181 TYR 181 159 159 TYR TYR A . n A 1 182 GLU 182 160 160 GLU GLU A . n A 1 183 LEU 183 161 161 LEU LEU A . n A 1 184 THR 184 162 162 THR THR A . n A 1 185 SER 185 163 163 SER SER A . n A 1 186 ARG 186 164 164 ARG ARG A . n A 1 187 ASN 187 165 165 ASN ASN A . n A 1 188 GLU 188 166 166 GLU GLU A . n A 1 189 PRO 189 167 167 PRO PRO A . n A 1 190 PHE 190 168 168 PHE PHE A . n A 1 191 LYS 191 169 169 LYS LYS A . n A 1 192 GLY 192 170 170 GLY GLY A . n A 1 193 THR 193 171 171 THR THR A . n A 1 194 ILE 194 172 172 ILE ILE A . n A 1 195 VAL 195 173 173 VAL VAL A . n A 1 196 SER 196 174 174 SER SER A . n A 1 197 ARG 197 175 175 ARG ARG A . n A 1 198 LYS 198 176 176 LYS LYS A . n A 1 199 SER 199 177 177 SER SER A . n A 1 200 VAL 200 178 178 VAL VAL A . n A 1 201 ALA 201 179 179 ALA ALA A . n A 1 202 ALA 202 180 180 ALA ALA A . n A 1 203 LEU 203 181 181 LEU LEU A . n A 1 204 ILE 204 182 182 ILE ILE A . n A 1 205 THR 205 183 183 THR THR A . n A 1 206 ASP 206 184 184 ASP ASP A . n A 1 207 ILE 207 185 185 ILE ILE A . n A 1 208 ILE 208 186 186 ILE ILE A . n A 1 209 ASP 209 187 187 ASP ASP A . n A 1 210 LYS 210 188 188 LYS LYS A . n A 1 211 PRO 211 189 189 PRO PRO A . n A 1 212 GLU 212 190 190 GLU GLU A . n A 1 213 LYS 213 191 191 LYS LYS A . n A 1 214 HIS 214 192 192 HIS HIS A . n A 1 215 ILE 215 193 193 ILE ILE A . n A 1 216 GLY 216 194 194 GLY GLY A . n A 1 217 GLU 217 195 195 GLU GLU A . n A 1 218 ASN 218 196 196 ASN ASN A . n A 1 219 ILE 219 197 197 ILE ILE A . n A 1 220 GLY 220 198 198 GLY GLY A . n A 1 221 ILE 221 199 199 ILE ILE A . n A 1 222 ASN 222 200 200 ASN ASN A . n A 1 223 GLN 223 201 201 GLN GLN A . n A 1 224 PRO 224 202 202 PRO PRO A . n A 1 225 GLY 225 203 203 GLY GLY A . n A 1 226 THR 226 204 204 THR THR A . n A 1 227 ASP 227 205 205 ASP ASP A . n A 1 228 GLY 228 206 206 GLY GLY A . n A 1 229 ASP 229 207 207 ASP ASP A . n A 1 230 LYS 230 208 208 LYS LYS A . n A 1 231 PRO 231 209 209 PRO PRO A . n A 1 232 PHE 232 210 210 PHE PHE A . n A 1 233 PHE 233 211 211 PHE PHE A . n A 1 234 MSE 234 212 212 MSE MSE A . n A 1 235 GLY 235 213 ? ? ? A . n A 1 236 SER 236 214 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MNB 1 215 1 MNB MNB A . C 3 HOH 1 216 1 HOH HOH A . C 3 HOH 2 217 2 HOH HOH A . C 3 HOH 3 218 3 HOH HOH A . C 3 HOH 4 219 4 HOH HOH A . C 3 HOH 5 220 5 HOH HOH A . C 3 HOH 6 221 6 HOH HOH A . C 3 HOH 7 222 7 HOH HOH A . C 3 HOH 8 223 8 HOH HOH A . C 3 HOH 9 224 9 HOH HOH A . C 3 HOH 10 225 10 HOH HOH A . C 3 HOH 11 226 11 HOH HOH A . C 3 HOH 12 227 12 HOH HOH A . C 3 HOH 13 228 13 HOH HOH A . C 3 HOH 14 229 14 HOH HOH A . C 3 HOH 15 230 15 HOH HOH A . C 3 HOH 16 231 16 HOH HOH A . C 3 HOH 17 232 17 HOH HOH A . C 3 HOH 18 233 18 HOH HOH A . C 3 HOH 19 234 19 HOH HOH A . C 3 HOH 20 235 20 HOH HOH A . C 3 HOH 21 236 21 HOH HOH A . C 3 HOH 22 237 22 HOH HOH A . C 3 HOH 23 238 23 HOH HOH A . C 3 HOH 24 239 24 HOH HOH A . C 3 HOH 25 240 25 HOH HOH A . C 3 HOH 26 241 26 HOH HOH A . C 3 HOH 27 242 27 HOH HOH A . C 3 HOH 28 243 28 HOH HOH A . C 3 HOH 29 244 29 HOH HOH A . C 3 HOH 30 245 30 HOH HOH A . C 3 HOH 31 246 31 HOH HOH A . C 3 HOH 32 247 32 HOH HOH A . C 3 HOH 33 248 33 HOH HOH A . C 3 HOH 34 249 34 HOH HOH A . C 3 HOH 35 250 35 HOH HOH A . C 3 HOH 36 251 36 HOH HOH A . C 3 HOH 37 252 37 HOH HOH A . C 3 HOH 38 253 38 HOH HOH A . C 3 HOH 39 254 39 HOH HOH A . C 3 HOH 40 255 40 HOH HOH A . C 3 HOH 41 256 41 HOH HOH A . C 3 HOH 42 257 42 HOH HOH A . C 3 HOH 43 258 43 HOH HOH A . C 3 HOH 44 259 44 HOH HOH A . C 3 HOH 45 260 45 HOH HOH A . C 3 HOH 46 261 46 HOH HOH A . C 3 HOH 47 262 47 HOH HOH A . C 3 HOH 48 263 48 HOH HOH A . C 3 HOH 49 264 49 HOH HOH A . C 3 HOH 50 265 50 HOH HOH A . C 3 HOH 51 266 51 HOH HOH A . C 3 HOH 52 267 52 HOH HOH A . C 3 HOH 53 268 53 HOH HOH A . C 3 HOH 54 269 54 HOH HOH A . C 3 HOH 55 270 55 HOH HOH A . C 3 HOH 56 271 56 HOH HOH A . C 3 HOH 57 272 57 HOH HOH A . C 3 HOH 58 273 58 HOH HOH A . C 3 HOH 59 274 59 HOH HOH A . C 3 HOH 60 275 60 HOH HOH A . C 3 HOH 61 276 61 HOH HOH A . C 3 HOH 62 277 62 HOH HOH A . C 3 HOH 63 278 63 HOH HOH A . C 3 HOH 64 279 64 HOH HOH A . C 3 HOH 65 280 65 HOH HOH A . C 3 HOH 66 281 66 HOH HOH A . C 3 HOH 67 282 67 HOH HOH A . C 3 HOH 68 283 68 HOH HOH A . C 3 HOH 69 284 69 HOH HOH A . C 3 HOH 70 285 70 HOH HOH A . C 3 HOH 71 286 71 HOH HOH A . C 3 HOH 72 287 72 HOH HOH A . C 3 HOH 73 288 73 HOH HOH A . C 3 HOH 74 289 74 HOH HOH A . C 3 HOH 75 290 75 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 73 A MSE 51 ? MET SELENOMETHIONINE 3 A MSE 86 A MSE 64 ? MET SELENOMETHIONINE 4 A MSE 112 A MSE 90 ? MET SELENOMETHIONINE 5 A MSE 234 A MSE 212 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-10-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn 2 3 'Structure model' diffrn_detector 3 3 'Structure model' diffrn_source 4 3 'Structure model' reflns_shell # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_reflns_shell.pdbx_diffrn_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.350 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 15548 _diffrn_reflns.pdbx_Rmerge_I_obs 0.114 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.32 _diffrn_reflns.av_sigmaI_over_netI 34.06 _diffrn_reflns.pdbx_redundancy 15.20 _diffrn_reflns.pdbx_percent_possible_obs 99.70 _diffrn_reflns.number 236700 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 6.37 50.00 ? ? 0.093 ? 3.486 12.70 95.00 1 5.06 6.37 ? ? 0.096 ? 2.857 14.40 99.90 1 4.42 5.06 ? ? 0.096 ? 2.489 14.80 99.90 1 4.02 4.42 ? ? 0.102 ? 2.274 15.10 100.00 1 3.73 4.02 ? ? 0.097 ? 1.880 15.30 99.90 1 3.51 3.73 ? ? 0.107 ? 1.698 15.50 100.00 1 3.33 3.51 ? ? 0.112 ? 1.461 15.60 100.00 1 3.19 3.33 ? ? 0.128 ? 1.210 15.70 100.00 1 3.07 3.19 ? ? 0.141 ? 1.109 15.80 100.00 1 2.96 3.07 ? ? 0.155 ? 0.986 15.70 100.00 1 2.87 2.96 ? ? 0.198 ? 0.877 15.80 100.00 1 2.79 2.87 ? ? 0.246 ? 0.805 15.90 100.00 1 2.71 2.79 ? ? 0.288 ? 0.759 15.90 100.00 1 2.65 2.71 ? ? 0.304 ? 0.771 15.90 100.00 1 2.59 2.65 ? ? 0.390 ? 0.712 15.80 100.00 1 2.53 2.59 ? ? 0.450 ? 0.660 16.00 100.00 1 2.48 2.53 ? ? 0.533 ? 0.665 15.60 100.00 1 2.43 2.48 ? ? 0.587 ? 0.636 15.20 100.00 1 2.39 2.43 ? ? 0.581 ? 0.621 14.60 100.00 1 2.35 2.39 ? ? 0.654 ? 0.628 13.50 100.00 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 17.9993 _pdbx_refine_tls.origin_y 9.2326 _pdbx_refine_tls.origin_z 10.4409 _pdbx_refine_tls.T[1][1] 0.0593 _pdbx_refine_tls.T[2][2] 0.3849 _pdbx_refine_tls.T[3][3] 0.1397 _pdbx_refine_tls.T[1][2] 0.0176 _pdbx_refine_tls.T[1][3] 0.0348 _pdbx_refine_tls.T[2][3] -0.0852 _pdbx_refine_tls.L[1][1] 4.3302 _pdbx_refine_tls.L[2][2] 1.9956 _pdbx_refine_tls.L[3][3] 3.4218 _pdbx_refine_tls.L[1][2] 1.7730 _pdbx_refine_tls.L[1][3] -0.1687 _pdbx_refine_tls.L[2][3] -0.7443 _pdbx_refine_tls.S[1][1] 0.2200 _pdbx_refine_tls.S[1][2] -0.1399 _pdbx_refine_tls.S[1][3] 0.1682 _pdbx_refine_tls.S[2][1] 0.1196 _pdbx_refine_tls.S[2][2] -0.1269 _pdbx_refine_tls.S[2][3] -0.1670 _pdbx_refine_tls.S[3][1] 0.2046 _pdbx_refine_tls.S[3][2] 0.7473 _pdbx_refine_tls.S[3][3] -0.0931 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 212 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 2.35 50.00 12800 0.100 0.000 1.290 2623 0.100 0.000 1.000 2 2.35 50.00 12781 6.000 0.260 0.990 2599 10.200 0.210 0.960 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 14.15 50.00 32 1.000 0.000 1.300 51 0.600 0.000 1.000 1 8.24 14.15 183 0.900 0.000 1.000 118 0.600 0.000 1.000 1 5.81 8.24 499 0.500 0.000 1.120 216 0.400 0.000 1.000 1 4.49 5.81 951 0.400 0.000 1.300 296 0.300 0.000 1.000 1 3.66 4.49 1538 0.200 0.000 1.110 368 0.200 0.000 1.000 1 3.09 3.66 2280 0.100 0.000 1.430 448 0.100 0.000 1.000 1 2.67 3.09 3153 0.000 0.000 4.430 524 0.000 0.000 1.000 1 2.35 2.67 4164 0.000 0.000 1.600 602 0.000 0.000 1.000 2 14.15 50.00 27 23.400 0.500 0.990 44 26.800 0.350 0.940 2 8.24 14.15 170 25.700 0.330 0.980 111 23.500 0.300 0.960 2 5.81 8.24 499 13.400 0.470 0.960 213 17.200 0.320 0.930 2 4.49 5.81 951 11.900 0.360 0.970 292 15.800 0.250 0.950 2 3.66 4.49 1537 9.400 0.280 0.990 365 14.000 0.180 0.970 2 3.09 3.66 2280 5.700 0.250 0.990 448 8.300 0.180 0.970 2 2.67 3.09 3153 3.800 0.180 0.990 524 5.400 0.140 0.980 2 2.35 2.67 4164 3.400 0.100 1.000 602 4.900 0.070 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se 0.860 0.975 0.057 111.7398 0.000 7.172 2 Se 0.901 0.937 0.184 99.3223 0.000 4.930 3 Se 0.856 0.894 0.204 96.0561 0.000 3.970 4 Se 0.838 0.548 0.203 157.1207 0.000 4.946 5 Se 1.145 0.879 0.154 92.7710 0.000 4.016 6 Se 0.860 0.974 0.058 101.1080 -0.082 3.913 7 Se 0.901 0.937 0.184 94.4571 -0.072 2.815 8 Se 0.856 0.893 0.204 94.1694 -0.027 2.450 9 Se 0.838 0.548 0.203 164.3808 -0.056 2.916 10 Se 1.145 0.879 0.154 82.7929 -0.042 2.173 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 14.15 50.00 83 0.344 51 0.181 32 0.604 8.24 14.15 301 0.399 118 0.145 183 0.563 5.81 8.24 715 0.534 216 0.234 499 0.664 4.49 5.81 1247 0.511 296 0.215 951 0.604 3.66 4.49 1906 0.478 368 0.177 1538 0.550 3.09 3.66 2728 0.410 448 0.160 2280 0.459 2.67 3.09 3677 0.242 524 0.094 3153 0.267 2.35 2.67 4766 0.098 602 0.029 4164 0.108 # _pdbx_phasing_dm.entry_id 3QVO _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 15423 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 7.540 100.000 62.500 ? ? ? 0.618 ? ? 506 5.990 7.540 54.700 ? ? ? 0.873 ? ? 505 5.200 5.990 53.400 ? ? ? 0.887 ? ? 510 4.720 5.200 51.400 ? ? ? 0.910 ? ? 513 4.370 4.720 55.900 ? ? ? 0.911 ? ? 501 4.100 4.370 56.200 ? ? ? 0.907 ? ? 507 3.890 4.100 56.700 ? ? ? 0.895 ? ? 503 3.720 3.890 60.400 ? ? ? 0.881 ? ? 505 3.570 3.720 61.100 ? ? ? 0.876 ? ? 511 3.440 3.570 57.400 ? ? ? 0.880 ? ? 536 3.320 3.440 60.200 ? ? ? 0.860 ? ? 545 3.210 3.320 60.800 ? ? ? 0.848 ? ? 564 3.110 3.210 62.100 ? ? ? 0.868 ? ? 583 3.020 3.110 62.900 ? ? ? 0.832 ? ? 602 2.940 3.020 61.600 ? ? ? 0.837 ? ? 604 2.870 2.940 65.700 ? ? ? 0.830 ? ? 630 2.800 2.870 68.600 ? ? ? 0.835 ? ? 655 2.730 2.800 69.400 ? ? ? 0.803 ? ? 648 2.670 2.730 71.000 ? ? ? 0.843 ? ? 689 2.610 2.670 69.500 ? ? ? 0.840 ? ? 667 2.560 2.610 74.900 ? ? ? 0.799 ? ? 714 2.510 2.560 75.000 ? ? ? 0.830 ? ? 722 2.460 2.510 79.900 ? ? ? 0.797 ? ? 715 2.420 2.460 77.400 ? ? ? 0.822 ? ? 737 2.350 2.420 80.400 ? ? ? 0.694 ? ? 1251 # _phasing.method MAD # _phasing_MAD.entry_id 3QVO _phasing_MAD.pdbx_d_res_high 2.35 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 15423 _phasing_MAD.pdbx_fom 0.295 _phasing_MAD.pdbx_reflns_centric 2623 _phasing_MAD.pdbx_fom_centric 0.131 _phasing_MAD.pdbx_reflns_acentric 12800 _phasing_MAD.pdbx_fom_acentric 0.329 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MLPHARE . ? other 'Eleanor J. Dodson' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/mlphare.html Fortran_77 ? 3 DM 6.0 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 7 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 9 HKL-3000 . ? ? ? ? phasing ? ? ? 10 SHELXD . ? ? ? ? phasing ? ? ? 11 SHELXE . ? ? ? ? 'model building' ? ? ? 12 SOLVE . ? ? ? ? phasing ? ? ? 13 RESOLVE . ? ? ? ? phasing ? ? ? 14 ARP/wARP . ? ? ? ? 'model building' ? ? ? 15 CCP4 . ? ? ? ? phasing ? ? ? 16 O . ? ? ? ? 'model building' ? ? ? 17 Coot . ? ? ? ? 'model building' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 0 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 287 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 149 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -64.76 _pdbx_validate_torsion.psi -176.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 0 ? CG ? A HIS 22 CG 2 1 Y 1 A HIS 0 ? ND1 ? A HIS 22 ND1 3 1 Y 1 A HIS 0 ? CD2 ? A HIS 22 CD2 4 1 Y 1 A HIS 0 ? CE1 ? A HIS 22 CE1 5 1 Y 1 A HIS 0 ? NE2 ? A HIS 22 NE2 6 1 Y 1 A ARG 15 ? CG ? A ARG 37 CG 7 1 Y 1 A ARG 15 ? CD ? A ARG 37 CD 8 1 Y 1 A ARG 15 ? NE ? A ARG 37 NE 9 1 Y 1 A ARG 15 ? CZ ? A ARG 37 CZ 10 1 Y 1 A ARG 15 ? NH1 ? A ARG 37 NH1 11 1 Y 1 A ARG 15 ? NH2 ? A ARG 37 NH2 12 1 Y 1 A LYS 61 ? CG ? A LYS 83 CG 13 1 Y 1 A LYS 61 ? CD ? A LYS 83 CD 14 1 Y 1 A LYS 61 ? CE ? A LYS 83 CE 15 1 Y 1 A LYS 61 ? NZ ? A LYS 83 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -21 ? A MSE 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A SER -19 ? A SER 3 4 1 Y 1 A SER -18 ? A SER 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A SER -11 ? A SER 11 12 1 Y 1 A SER -10 ? A SER 12 13 1 Y 1 A GLY -9 ? A GLY 13 14 1 Y 1 A ARG -8 ? A ARG 14 15 1 Y 1 A GLU -7 ? A GLU 15 16 1 Y 1 A ASN -6 ? A ASN 16 17 1 Y 1 A LEU -5 ? A LEU 17 18 1 Y 1 A TYR -4 ? A TYR 18 19 1 Y 1 A PHE -3 ? A PHE 19 20 1 Y 1 A GLN -2 ? A GLN 20 21 1 Y 1 A GLY -1 ? A GLY 21 22 1 Y 1 A ILE 106 ? A ILE 128 23 1 Y 1 A TYR 107 ? A TYR 129 24 1 Y 1 A ASP 108 ? A ASP 130 25 1 Y 1 A GLU 109 ? A GLU 131 26 1 Y 1 A VAL 110 ? A VAL 132 27 1 Y 1 A PRO 111 ? A PRO 133 28 1 Y 1 A GLY 112 ? A GLY 134 29 1 Y 1 A LYS 113 ? A LYS 135 30 1 Y 1 A PHE 114 ? A PHE 136 31 1 Y 1 A VAL 115 ? A VAL 137 32 1 Y 1 A GLU 116 ? A GLU 138 33 1 Y 1 A TRP 117 ? A TRP 139 34 1 Y 1 A ASN 118 ? A ASN 140 35 1 Y 1 A ASN 119 ? A ASN 141 36 1 Y 1 A ALA 120 ? A ALA 142 37 1 Y 1 A VAL 121 ? A VAL 143 38 1 Y 1 A GLY 213 ? A GLY 235 39 1 Y 1 A SER 214 ? A SER 236 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-MERCAPTO-2-NITRO-BENZOIC ACID' MNB 3 water HOH #