HEADER PROTEIN BINDING/SIGNALING PROTEIN 28-FEB-11 3QWQ TITLE CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE EPIDERMAL GROWTH TITLE 2 FACTOR RECEPTOR IN COMPLEX WITH AN ADNECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTODOMAIN; COMPND 5 SYNONYM: PROTO-ONCOGENE C-ERBB-1, RECEPTOR TYROSINE-PROTEIN KINASE COMPND 6 ERBB-1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ADNECTIN; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET9 PCT734 KEYWDS CELL SURFACE RECEPTOR, TYROSINE KINASE, GLYCOPROTEIN, ADNECTIN, KEYWDS 2 ANTITUMOR, DRUG, ENGINEERED BINDING PROTEIN, ANTIBODY MIMIC, KEYWDS 3 SIGNALING PROTEIN, PROTEIN BINDING-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SHERIFF REVDAT 4 13-SEP-23 3QWQ 1 HETSYN REVDAT 3 29-JUL-20 3QWQ 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 29-FEB-12 3QWQ 1 JRNL REVDAT 1 01-FEB-12 3QWQ 0 JRNL AUTH V.RAMAMURTHY,S.R.KRYSTEK,A.BUSH,A.WEI,S.L.EMANUEL, JRNL AUTH 2 R.DAS GUPTA,A.JANJUA,L.CHENG,M.MURDOCK,B.ABRAMCZYK,D.COHEN, JRNL AUTH 3 Z.LIN,P.MORIN,J.H.DAVIS,M.DABRITZ,D.C.MCLAUGHLIN,K.A.RUSSO, JRNL AUTH 4 G.CHAO,M.C.WRIGHT,V.A.JENNY,L.J.ENGLE,E.FURFINE,S.SHERIFF JRNL TITL STRUCTURES OF ADNECTIN/PROTEIN COMPLEXES REVEAL AN EXPANDED JRNL TITL 2 BINDING FOOTPRINT. JRNL REF STRUCTURE V. 20 259 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22325775 JRNL DOI 10.1016/J.STR.2011.11.016 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.13.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1058 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2845 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2539 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2743 REMARK 3 BIN R VALUE (WORKING SET) : 0.2782 REMARK 3 BIN FREE R VALUE : 0.3199 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.59 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 102 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 237 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.26780 REMARK 3 B22 (A**2) : -3.41560 REMARK 3 B33 (A**2) : 6.68340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.390 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.380 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.270 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.380 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.270 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5753 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7875 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1978 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 143 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 830 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5753 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 835 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6384 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 2 A 614 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5170 -9.7254 29.9020 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: -0.0481 REMARK 3 T33: -0.0961 T12: -0.0320 REMARK 3 T13: 0.0447 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.2136 L22: 0.1505 REMARK 3 L33: 0.6592 L12: -0.1193 REMARK 3 L13: 0.0611 L23: 0.2258 REMARK 3 S TENSOR REMARK 3 S11: 0.1687 S12: -0.1130 S13: 0.0323 REMARK 3 S21: 0.1913 S22: -0.0320 S23: 0.0279 REMARK 3 S31: 0.1043 S32: -0.1656 S33: -0.1367 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 3 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): -31.9618 -3.2159 3.2361 REMARK 3 T TENSOR REMARK 3 T11: -0.0779 T22: -0.0408 REMARK 3 T33: 0.0416 T12: -0.0233 REMARK 3 T13: 0.0257 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 4.9994 L22: 1.4824 REMARK 3 L33: 0.7232 L12: -2.3766 REMARK 3 L13: -0.3827 L23: -0.1415 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.0651 S13: 0.2926 REMARK 3 S21: -0.0009 S22: -0.0366 S23: -0.2011 REMARK 3 S31: -0.1533 S32: 0.0754 S33: 0.0227 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 (DENZO) REMARK 200 DATA SCALING SOFTWARE : HKL-2000 (SCALEPACK) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34285 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: EGFR FROM PDB ENTRY 1NQL AND ADNECTIN FROM PDB REMARK 200 ENTRY 1FNF RESIDUES 1421-1437, 1444-1466, 1470-1491, 1502-1509 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 131.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 ARG A -22 REMARK 465 PRO A -21 REMARK 465 SER A -20 REMARK 465 GLY A -19 REMARK 465 THR A -18 REMARK 465 ALA A -17 REMARK 465 GLY A -16 REMARK 465 ALA A -15 REMARK 465 ALA A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 ALA A -8 REMARK 465 ALA A -7 REMARK 465 LEU A -6 REMARK 465 CYS A -5 REMARK 465 PRO A -4 REMARK 465 ALA A -3 REMARK 465 SER A -2 REMARK 465 ARG A -1 REMARK 465 ALA A 0 REMARK 465 LEU A 1 REMARK 465 ASN A 615 REMARK 465 GLY A 616 REMARK 465 PRO A 617 REMARK 465 LYS A 618 REMARK 465 HIS A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 465 HIS A 624 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 VAL B 1 REMARK 465 SER B 2 REMARK 465 LYS B 98 REMARK 465 PRO B 99 REMARK 465 SER B 100 REMARK 465 GLN B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 105 CE NZ REMARK 470 LYS A 109 CE NZ REMARK 470 HIS A 159 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 162 OG REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 279 CG OD1 OD2 REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 VAL A 312 CG1 CG2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 LYS A 454 CG CD CE NZ REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 GLU A 472 CG CD OE1 OE2 REMARK 470 ARG A 509 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 514 CE NZ REMARK 470 TYR A 602 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 VAL B 4 CG1 CG2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 SER B 43 OG REMARK 470 HIS B 84 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 86 OG REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 ILE B 96 CG1 CG2 CD1 REMARK 470 ASP B 97 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 160 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 39.30 -140.85 REMARK 500 LYS A 13 -116.42 43.81 REMARK 500 ASN A 49 -5.92 81.50 REMARK 500 ASN A 91 -1.34 62.75 REMARK 500 SER A 92 -17.64 -147.87 REMARK 500 ASN A 100 72.25 -100.25 REMARK 500 ASN A 134 -34.85 69.14 REMARK 500 ASN A 158 -87.31 -146.74 REMARK 500 HIS A 159 -51.66 176.57 REMARK 500 LEU A 160 -21.93 -169.39 REMARK 500 THR A 187 19.93 -140.59 REMARK 500 LYS A 188 -60.10 -141.59 REMARK 500 ALA A 214 -58.33 71.32 REMARK 500 LYS A 229 -72.52 -128.05 REMARK 500 GLU A 233 -99.31 55.75 REMARK 500 GLU A 306 -85.11 -26.08 REMARK 500 ILE A 318 -69.15 -106.30 REMARK 500 ASP A 323 -1.69 70.03 REMARK 500 LYS A 336 -86.49 -23.37 REMARK 500 LEU A 426 51.61 -91.17 REMARK 500 LEU A 429 106.22 -57.78 REMARK 500 ASN A 469 -159.23 -107.39 REMARK 500 PRO A 488 -8.78 -58.01 REMARK 500 GLU A 489 0.75 -64.95 REMARK 500 ASN A 504 -113.74 -133.29 REMARK 500 GLU A 521 -79.34 -64.83 REMARK 500 MET A 543 15.51 55.18 REMARK 500 HIS A 560 -80.05 -120.32 REMARK 500 THR A 601 -16.17 -46.17 REMARK 500 VAL B 4 108.01 40.14 REMARK 500 ASN B 42 -69.84 60.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QWR RELATED DB: PDB DBREF 3QWQ A -23 618 UNP P00533 EGFR_HUMAN 1 642 DBREF 3QWQ B -1 107 PDB 3QWQ 3QWQ -1 107 SEQADV 3QWQ HIS A 619 UNP P00533 EXPRESSION TAG SEQADV 3QWQ HIS A 620 UNP P00533 EXPRESSION TAG SEQADV 3QWQ HIS A 621 UNP P00533 EXPRESSION TAG SEQADV 3QWQ HIS A 622 UNP P00533 EXPRESSION TAG SEQADV 3QWQ HIS A 623 UNP P00533 EXPRESSION TAG SEQADV 3QWQ HIS A 624 UNP P00533 EXPRESSION TAG SEQRES 1 A 648 MET ARG PRO SER GLY THR ALA GLY ALA ALA LEU LEU ALA SEQRES 2 A 648 LEU LEU ALA ALA LEU CYS PRO ALA SER ARG ALA LEU GLU SEQRES 3 A 648 GLU LYS LYS VAL CYS GLN GLY THR SER ASN LYS LEU THR SEQRES 4 A 648 GLN LEU GLY THR PHE GLU ASP HIS PHE LEU SER LEU GLN SEQRES 5 A 648 ARG MET PHE ASN ASN CYS GLU VAL VAL LEU GLY ASN LEU SEQRES 6 A 648 GLU ILE THR TYR VAL GLN ARG ASN TYR ASP LEU SER PHE SEQRES 7 A 648 LEU LYS THR ILE GLN GLU VAL ALA GLY TYR VAL LEU ILE SEQRES 8 A 648 ALA LEU ASN THR VAL GLU ARG ILE PRO LEU GLU ASN LEU SEQRES 9 A 648 GLN ILE ILE ARG GLY ASN MET TYR TYR GLU ASN SER TYR SEQRES 10 A 648 ALA LEU ALA VAL LEU SER ASN TYR ASP ALA ASN LYS THR SEQRES 11 A 648 GLY LEU LYS GLU LEU PRO MET ARG ASN LEU GLN GLU ILE SEQRES 12 A 648 LEU HIS GLY ALA VAL ARG PHE SER ASN ASN PRO ALA LEU SEQRES 13 A 648 CYS ASN VAL GLU SER ILE GLN TRP ARG ASP ILE VAL SER SEQRES 14 A 648 SER ASP PHE LEU SER ASN MET SER MET ASP PHE GLN ASN SEQRES 15 A 648 HIS LEU GLY SER CYS GLN LYS CYS ASP PRO SER CYS PRO SEQRES 16 A 648 ASN GLY SER CYS TRP GLY ALA GLY GLU GLU ASN CYS GLN SEQRES 17 A 648 LYS LEU THR LYS ILE ILE CYS ALA GLN GLN CYS SER GLY SEQRES 18 A 648 ARG CYS ARG GLY LYS SER PRO SER ASP CYS CYS HIS ASN SEQRES 19 A 648 GLN CYS ALA ALA GLY CYS THR GLY PRO ARG GLU SER ASP SEQRES 20 A 648 CYS LEU VAL CYS ARG LYS PHE ARG ASP GLU ALA THR CYS SEQRES 21 A 648 LYS ASP THR CYS PRO PRO LEU MET LEU TYR ASN PRO THR SEQRES 22 A 648 THR TYR GLN MET ASP VAL ASN PRO GLU GLY LYS TYR SER SEQRES 23 A 648 PHE GLY ALA THR CYS VAL LYS LYS CYS PRO ARG ASN TYR SEQRES 24 A 648 VAL VAL THR ASP HIS GLY SER CYS VAL ARG ALA CYS GLY SEQRES 25 A 648 ALA ASP SER TYR GLU MET GLU GLU ASP GLY VAL ARG LYS SEQRES 26 A 648 CYS LYS LYS CYS GLU GLY PRO CYS ARG LYS VAL CYS ASN SEQRES 27 A 648 GLY ILE GLY ILE GLY GLU PHE LYS ASP SER LEU SER ILE SEQRES 28 A 648 ASN ALA THR ASN ILE LYS HIS PHE LYS ASN CYS THR SER SEQRES 29 A 648 ILE SER GLY ASP LEU HIS ILE LEU PRO VAL ALA PHE ARG SEQRES 30 A 648 GLY ASP SER PHE THR HIS THR PRO PRO LEU ASP PRO GLN SEQRES 31 A 648 GLU LEU ASP ILE LEU LYS THR VAL LYS GLU ILE THR GLY SEQRES 32 A 648 PHE LEU LEU ILE GLN ALA TRP PRO GLU ASN ARG THR ASP SEQRES 33 A 648 LEU HIS ALA PHE GLU ASN LEU GLU ILE ILE ARG GLY ARG SEQRES 34 A 648 THR LYS GLN HIS GLY GLN PHE SER LEU ALA VAL VAL SER SEQRES 35 A 648 LEU ASN ILE THR SER LEU GLY LEU ARG SER LEU LYS GLU SEQRES 36 A 648 ILE SER ASP GLY ASP VAL ILE ILE SER GLY ASN LYS ASN SEQRES 37 A 648 LEU CYS TYR ALA ASN THR ILE ASN TRP LYS LYS LEU PHE SEQRES 38 A 648 GLY THR SER GLY GLN LYS THR LYS ILE ILE SER ASN ARG SEQRES 39 A 648 GLY GLU ASN SER CYS LYS ALA THR GLY GLN VAL CYS HIS SEQRES 40 A 648 ALA LEU CYS SER PRO GLU GLY CYS TRP GLY PRO GLU PRO SEQRES 41 A 648 ARG ASP CYS VAL SER CYS ARG ASN VAL SER ARG GLY ARG SEQRES 42 A 648 GLU CYS VAL ASP LYS CYS ASN LEU LEU GLU GLY GLU PRO SEQRES 43 A 648 ARG GLU PHE VAL GLU ASN SER GLU CYS ILE GLN CYS HIS SEQRES 44 A 648 PRO GLU CYS LEU PRO GLN ALA MET ASN ILE THR CYS THR SEQRES 45 A 648 GLY ARG GLY PRO ASP ASN CYS ILE GLN CYS ALA HIS TYR SEQRES 46 A 648 ILE ASP GLY PRO HIS CYS VAL LYS THR CYS PRO ALA GLY SEQRES 47 A 648 VAL MET GLY GLU ASN ASN THR LEU VAL TRP LYS TYR ALA SEQRES 48 A 648 ASP ALA GLY HIS VAL CYS HIS LEU CYS HIS PRO ASN CYS SEQRES 49 A 648 THR TYR GLY CYS THR GLY PRO GLY LEU GLU GLY CYS PRO SEQRES 50 A 648 THR ASN GLY PRO LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 114 MET GLY VAL SER ASP VAL PRO ARG ASP LEU GLU VAL VAL SEQRES 2 B 114 ALA ALA THR PRO THR SER LEU LEU ILE SER TRP ASP SER SEQRES 3 B 114 GLY ARG GLY SER TYR GLN TYR TYR ARG ILE THR TYR GLY SEQRES 4 B 114 GLU THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL SEQRES 5 B 114 PRO GLY PRO VAL HIS THR ALA THR ILE SER GLY LEU LYS SEQRES 6 B 114 PRO GLY VAL ASP TYR THR ILE THR VAL TYR ALA VAL THR SEQRES 7 B 114 ASP HIS LYS PRO HIS ALA ASP GLY PRO HIS THR TYR HIS SEQRES 8 B 114 GLU SER PRO ILE SER ILE ASN TYR ARG THR GLU ILE ASP SEQRES 9 B 114 LYS PRO SER GLN HIS HIS HIS HIS HIS HIS MODRES 3QWQ ASN A 32 ASN GLYCOSYLATION SITE MODRES 3QWQ ASN A 328 ASN GLYCOSYLATION SITE MODRES 3QWQ ASN A 337 ASN GLYCOSYLATION SITE MODRES 3QWQ ASN A 389 ASN GLYCOSYLATION SITE MODRES 3QWQ ASN A 420 ASN GLYCOSYLATION SITE MODRES 3QWQ ASN A 504 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET FUC F 6 10 HET NAG A1389 14 HET NAG A1420 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 9 HOH *14(H2 O) HELIX 1 1 THR A 19 ASN A 32 1 14 HELIX 2 2 LEU A 52 ILE A 58 5 7 HELIX 3 3 ASN A 134 ILE A 138 5 5 HELIX 4 4 PHE A 148 MET A 152 5 5 HELIX 5 5 CYS A 170 SER A 174 5 5 HELIX 6 6 GLU A 295 VAL A 299 5 5 HELIX 7 7 ASN A 331 LYS A 336 5 6 HELIX 8 8 LEU A 348 GLY A 354 1 7 HELIX 9 9 ASP A 364 VAL A 374 5 11 HELIX 10 10 LEU A 393 GLU A 397 5 5 HELIX 11 11 LYS A 407 GLY A 410 5 4 HELIX 12 12 TYR A 447 ILE A 451 5 5 HELIX 13 13 ASN A 452 PHE A 457 1 6 HELIX 14 14 GLY A 471 THR A 478 1 8 HELIX 15 15 GLY A 551 CYS A 555 5 5 SHEET 1 A 5 VAL A 6 CYS A 7 0 SHEET 2 A 5 VAL A 36 VAL A 37 1 O VAL A 36 N CYS A 7 SHEET 3 A 5 GLU A 60 VAL A 61 1 O GLU A 60 N VAL A 37 SHEET 4 A 5 ILE A 82 ILE A 83 1 O ILE A 82 N VAL A 61 SHEET 5 A 5 GLU A 118 ILE A 119 1 O GLU A 118 N ILE A 83 SHEET 1 B 4 GLN A 16 LEU A 17 0 SHEET 2 B 4 ASP B 67 LYS B 79 1 O ASP B 77 N GLN A 16 SHEET 3 B 4 TYR B 31 GLU B 38 -1 N GLY B 37 O THR B 69 SHEET 4 B 4 GLN B 46 PRO B 51 -1 O PHE B 48 N ILE B 34 SHEET 1 C 3 GLN A 16 LEU A 17 0 SHEET 2 C 3 ASP B 67 LYS B 79 1 O ASP B 77 N GLN A 16 SHEET 3 C 3 THR B 82 ARG B 93 -1 O TYR B 92 N TYR B 68 SHEET 1 D 5 LEU A 41 THR A 44 0 SHEET 2 D 5 VAL A 65 ALA A 68 1 O LEU A 66 N ILE A 43 SHEET 3 D 5 TYR A 93 LEU A 98 1 O ALA A 96 N ILE A 67 SHEET 4 D 5 ALA A 123 SER A 127 1 O ARG A 125 N VAL A 97 SHEET 5 D 5 SER A 153 MET A 154 1 O SER A 153 N PHE A 126 SHEET 1 E 2 CYS A 212 CYS A 216 0 SHEET 2 E 2 CYS A 224 CYS A 227 -1 O VAL A 226 N ALA A 213 SHEET 1 F 2 PHE A 230 ASP A 232 0 SHEET 2 F 2 THR A 235 LYS A 237 -1 O THR A 235 N ASP A 232 SHEET 1 G 2 MET A 244 TYR A 246 0 SHEET 2 G 2 MET A 253 VAL A 255 -1 O ASP A 254 N LEU A 245 SHEET 1 H 2 TYR A 261 PHE A 263 0 SHEET 2 H 2 THR A 266 VAL A 268 -1 O VAL A 268 N TYR A 261 SHEET 1 I 2 VAL A 276 VAL A 277 0 SHEET 2 I 2 CYS A 283 VAL A 284 -1 O VAL A 284 N VAL A 276 SHEET 1 J 2 SER A 291 MET A 294 0 SHEET 2 J 2 LYS A 301 LYS A 304 -1 O LYS A 303 N TYR A 292 SHEET 1 K 5 VAL A 312 ASN A 314 0 SHEET 2 K 5 SER A 340 SER A 342 1 O SER A 342 N CYS A 313 SHEET 3 K 5 GLU A 376 ILE A 377 1 O GLU A 376 N ILE A 341 SHEET 4 K 5 ILE A 401 ILE A 402 1 O ILE A 401 N ILE A 377 SHEET 5 K 5 GLU A 431 ILE A 432 1 O GLU A 431 N ILE A 402 SHEET 1 L 5 LEU A 345 ILE A 347 0 SHEET 2 L 5 LEU A 381 ILE A 383 1 O LEU A 382 N LEU A 345 SHEET 3 L 5 PHE A 412 VAL A 417 1 O ALA A 415 N ILE A 383 SHEET 4 L 5 ASP A 436 SER A 440 1 O ILE A 438 N LEU A 414 SHEET 5 L 5 THR A 464 ILE A 467 1 O LYS A 465 N VAL A 437 SHEET 1 M 2 VAL A 505 ARG A 507 0 SHEET 2 M 2 GLU A 510 VAL A 512 -1 O GLU A 510 N ARG A 507 SHEET 1 N 2 GLU A 524 GLU A 527 0 SHEET 2 N 2 GLU A 530 GLN A 533 -1 O ILE A 532 N PHE A 525 SHEET 1 O 2 TYR A 561 ASP A 563 0 SHEET 2 O 2 HIS A 566 VAL A 568 -1 O VAL A 568 N TYR A 561 SHEET 1 P 3 ALA A 573 MET A 576 0 SHEET 2 P 3 LEU A 582 ALA A 587 -1 O VAL A 583 N VAL A 575 SHEET 3 P 3 CYS A 593 LEU A 595 -1 O HIS A 594 N TYR A 586 SHEET 1 Q 3 ARG B 6 ALA B 13 0 SHEET 2 Q 3 LEU B 18 ASP B 23 -1 O LEU B 19 N VAL B 11 SHEET 3 Q 3 THR B 56 ILE B 59 -1 O ALA B 57 N ILE B 20 SSBOND 1 CYS A 7 CYS A 34 1555 1555 2.08 SSBOND 2 CYS A 133 CYS A 163 1555 1555 2.04 SSBOND 3 CYS A 166 CYS A 175 1555 1555 2.02 SSBOND 4 CYS A 170 CYS A 183 1555 1555 2.05 SSBOND 5 CYS A 191 CYS A 199 1555 1555 2.04 SSBOND 6 CYS A 195 CYS A 207 1555 1555 2.04 SSBOND 7 CYS A 208 CYS A 216 1555 1555 2.04 SSBOND 8 CYS A 212 CYS A 224 1555 1555 2.03 SSBOND 9 CYS A 227 CYS A 236 1555 1555 2.04 SSBOND 10 CYS A 240 CYS A 267 1555 1555 2.05 SSBOND 11 CYS A 271 CYS A 283 1555 1555 2.04 SSBOND 12 CYS A 287 CYS A 302 1555 1555 2.04 SSBOND 13 CYS A 305 CYS A 309 1555 1555 2.03 SSBOND 14 CYS A 313 CYS A 338 1555 1555 2.04 SSBOND 15 CYS A 446 CYS A 475 1555 1555 2.04 SSBOND 16 CYS A 482 CYS A 491 1555 1555 2.04 SSBOND 17 CYS A 486 CYS A 499 1555 1555 2.04 SSBOND 18 CYS A 502 CYS A 511 1555 1555 2.04 SSBOND 19 CYS A 515 CYS A 531 1555 1555 2.04 SSBOND 20 CYS A 534 CYS A 547 1555 1555 2.04 SSBOND 21 CYS A 538 CYS A 555 1555 1555 2.04 SSBOND 22 CYS A 558 CYS A 567 1555 1555 2.03 SSBOND 23 CYS A 571 CYS A 593 1555 1555 2.04 SSBOND 24 CYS A 596 CYS A 604 1555 1555 2.04 SSBOND 25 CYS A 600 CYS A 612 1555 1555 2.03 LINK ND2 ASN A 32 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 328 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 337 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 389 C1 NAG A1389 1555 1555 1.44 LINK ND2 ASN A 420 C1 NAG A1420 1555 1555 1.43 LINK ND2 ASN A 504 C1 NAG F 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.41 LINK O6 NAG C 1 C1 FUC C 6 1555 1555 1.41 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.41 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.46 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.42 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.41 LINK O6 NAG F 1 C1 FUC F 6 1555 1555 1.41 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.42 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.44 LINK O6 BMA F 3 C1 MAN F 5 1555 1555 1.42 CISPEP 1 PRO A 613 THR A 614 0 2.16 CISPEP 2 GLY B 40 GLY B 41 0 1.21 CRYST1 68.000 72.100 262.000 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003817 0.00000