data_3QWS # _entry.id 3QWS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.309 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3QWS NDB NA1005 RCSB RCSB064201 WWPDB D_1000064201 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2019-05-15 _pdbx_database_PDB_obs_spr.pdb_id 6ON0 _pdbx_database_PDB_obs_spr.replace_pdb_id 3QWS _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2HIN _pdbx_database_related.details 'Structure of N15 Cro at 1.05 A' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3QWS _pdbx_database_status.recvd_initial_deposition_date 2011-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, B.M.' 1 'Roberts, S.A.' 2 'Cordes, M.H.J.' 3 # _citation.id primary _citation.title 'Mysteries of an evolutionary code: the structure of N15 Cro complexed with operator DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hall, B.M.' 1 ? primary 'Roberts, S.A.' 2 ? primary ;O'Brien, D.J. ; 3 ? primary 'Dubrava, M.S.' 4 ? primary 'Cordes, M.H.J.' 5 ? # _cell.entry_id 3QWS _cell.length_a 56.602 _cell.length_b 56.602 _cell.length_c 195.982 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QWS _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Gp39 7839.874 2 ? ? ? ? 2 polymer syn "5'-D(*TP*TP*TP*AP*TP*AP*GP*CP*TP*AP*GP*CP*TP*AP*TP*AP*A)-3'" 5200.409 2 ? ? ? ? 3 water nat water 18.015 133 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Repressor protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MKPEELVRHFGDVEKAAVGVGVTPGAVYQWLQAGEIPPLRQSDIEVRTAYKLKSDFTSQRMGKEGHNSGTK MKPEELVRHFGDVEKAAVGVGVTPGAVYQWLQAGEIPPLRQSDIEVRTAYKLKSDFTSQRMGKEGHNSGTK A,B ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DT)(DA)(DT)(DA)(DG)(DC)(DT)(DA)(DG)(DC)(DT)(DA)(DT)(DA)(DA)' TTTATAGCTAGCTATAA C,N ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 PRO n 1 4 GLU n 1 5 GLU n 1 6 LEU n 1 7 VAL n 1 8 ARG n 1 9 HIS n 1 10 PHE n 1 11 GLY n 1 12 ASP n 1 13 VAL n 1 14 GLU n 1 15 LYS n 1 16 ALA n 1 17 ALA n 1 18 VAL n 1 19 GLY n 1 20 VAL n 1 21 GLY n 1 22 VAL n 1 23 THR n 1 24 PRO n 1 25 GLY n 1 26 ALA n 1 27 VAL n 1 28 TYR n 1 29 GLN n 1 30 TRP n 1 31 LEU n 1 32 GLN n 1 33 ALA n 1 34 GLY n 1 35 GLU n 1 36 ILE n 1 37 PRO n 1 38 PRO n 1 39 LEU n 1 40 ARG n 1 41 GLN n 1 42 SER n 1 43 ASP n 1 44 ILE n 1 45 GLU n 1 46 VAL n 1 47 ARG n 1 48 THR n 1 49 ALA n 1 50 TYR n 1 51 LYS n 1 52 LEU n 1 53 LYS n 1 54 SER n 1 55 ASP n 1 56 PHE n 1 57 THR n 1 58 SER n 1 59 GLN n 1 60 ARG n 1 61 MET n 1 62 GLY n 1 63 LYS n 1 64 GLU n 1 65 GLY n 1 66 HIS n 1 67 ASN n 1 68 SER n 1 69 GLY n 1 70 THR n 1 71 LYS n 2 1 DT n 2 2 DT n 2 3 DT n 2 4 DA n 2 5 DT n 2 6 DA n 2 7 DG n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DC n 2 13 DT n 2 14 DA n 2 15 DT n 2 16 DA n 2 17 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'cro, gene 39' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage N15' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 40631 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pMD104 (pET21b-derived)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Enterobacteria phage N15' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 40631 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q37964_BPN15 Q37964 1 MKPEELVRHFGDVEKAAVGVGVTPGAVYQWLQAGEIPPLRQSDIEVRTAYKLKSDFTSQRMGKEGHNSGTK 1 ? 2 PDB 3QWS 3QWS 2 TTTATAGCTAGCTATAA 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QWS A 1 ? 71 ? Q37964 1 ? 71 ? 1 71 2 1 3QWS B 1 ? 71 ? Q37964 1 ? 71 ? 1 71 3 2 3QWS C 1 ? 17 ? 3QWS 1 ? 17 ? 1 17 4 2 3QWS N 1 ? 17 ? 3QWS 1 ? 17 ? 1 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QWS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_percent_sol 59.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.4 M ammonium phosphate monobasic, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-12-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength 0.9794 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3QWS _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 65.3 _reflns.d_resolution_high 2.1 _reflns.number_obs 19616 _reflns.number_all 19616 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.21 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.449 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.7 _reflns_shell.pdbx_redundancy 16.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3QWS _refine.ls_number_reflns_obs 18537 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 54.39 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.21146 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21010 _refine.ls_R_factor_R_free 0.23822 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 998 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 46.637 _refine.aniso_B[1][1] 2.99 _refine.aniso_B[2][2] 2.99 _refine.aniso_B[3][3] -5.99 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2HIN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.182 _refine.pdbx_overall_ESU_R_Free 0.160 _refine.overall_SU_ML 0.118 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.844 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 977 _refine_hist.pdbx_number_atoms_nucleic_acid 688 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 1798 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 54.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1805 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1033 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.441 2.445 ? 2587 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.002 3.000 ? 2557 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.171 5.000 ? 130 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.434 23.913 ? 46 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.664 15.000 ? 187 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.497 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.068 0.200 ? 283 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1514 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 272 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.443 1.500 ? 642 'X-RAY DIFFRACTION' ? r_mcbond_other 0.114 1.500 ? 259 'X-RAY DIFFRACTION' ? r_mcangle_it 0.825 2.000 ? 1038 'X-RAY DIFFRACTION' ? r_scbond_it 1.210 3.000 ? 1163 'X-RAY DIFFRACTION' ? r_scangle_it 1.776 4.500 ? 1548 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.number_reflns_R_work 1341 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3QWS _struct.title 'Structure of N15 Cro complexed with consensus operator DNA' _struct.pdbx_descriptor 'Gp39/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QWS _struct_keywords.pdbx_keywords 'TRANSCRIPTION REPRESSOR/DNA' _struct_keywords.text ;structural evolution, helix-turn-helix, lambda repressor-like DNA-binding domain, phage repressor, transcription factor, repressor, DNA binding, TRANSCRIPTION REPRESSOR-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 2 ? GLY A 11 ? LYS A 2 GLY A 11 1 ? 10 HELX_P HELX_P2 2 ASP A 12 ? GLY A 21 ? ASP A 12 GLY A 21 1 ? 10 HELX_P HELX_P3 3 THR A 23 ? GLY A 34 ? THR A 23 GLY A 34 1 ? 12 HELX_P HELX_P4 4 PRO A 37 ? THR A 48 ? PRO A 37 THR A 48 1 ? 12 HELX_P HELX_P5 5 SER A 54 ? GLY A 62 ? SER A 54 GLY A 62 1 ? 9 HELX_P HELX_P6 6 LYS B 2 ? GLY B 11 ? LYS B 2 GLY B 11 1 ? 10 HELX_P HELX_P7 7 ASP B 12 ? GLY B 21 ? ASP B 12 GLY B 21 1 ? 10 HELX_P HELX_P8 8 THR B 23 ? GLY B 34 ? THR B 23 GLY B 34 1 ? 12 HELX_P HELX_P9 9 PRO B 37 ? THR B 48 ? PRO B 37 THR B 48 1 ? 12 HELX_P HELX_P10 10 SER B 54 ? MET B 61 ? SER B 54 MET B 61 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 17 N1 ? ? C DT 2 N DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 17 N6 ? ? C DT 2 N DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 16 N1 ? ? C DT 3 N DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 16 N6 ? ? C DT 3 N DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 15 N3 ? ? C DA 4 N DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 15 O4 ? ? C DA 4 N DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 14 N1 ? ? C DT 5 N DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 14 N6 ? ? C DT 5 N DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 13 N3 ? ? C DA 6 N DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 13 O4 ? ? C DA 6 N DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 7 N DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 12 O2 ? ? C DG 7 N DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 12 N4 ? ? C DG 7 N DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 8 N DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 8 N DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 8 N DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 9 N DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 9 N DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 10 N DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 10 N DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DC 8 N3 ? ? C DG 11 N DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D DC 8 O2 ? ? C DG 11 N DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DG 11 O6 ? ? ? 1_555 D DC 8 N4 ? ? C DG 11 N DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 12 N DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 12 N DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 12 N DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DT 13 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 13 N DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DT 13 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 13 N DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 14 N DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 14 N DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DT 15 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 15 N DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DT 15 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 15 N DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DA 16 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 16 N DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C DA 16 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 16 N DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C DA 17 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 17 N DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C DA 17 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 17 N DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3QWS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QWS _atom_sites.fract_transf_matrix[1][1] 0.017667 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017667 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005103 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 LYS 63 63 ? ? ? A . n A 1 64 GLU 64 64 ? ? ? A . n A 1 65 GLY 65 65 ? ? ? A . n A 1 66 HIS 66 66 ? ? ? A . n A 1 67 ASN 67 67 ? ? ? A . n A 1 68 SER 68 68 ? ? ? A . n A 1 69 GLY 69 69 ? ? ? A . n A 1 70 THR 70 70 ? ? ? A . n A 1 71 LYS 71 71 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 PRO 3 3 3 PRO PRO B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 HIS 9 9 9 HIS HIS B . n B 1 10 PHE 10 10 10 PHE PHE B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 ASP 12 12 12 ASP ASP B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 ALA 16 16 16 ALA ALA B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 VAL 22 22 22 VAL VAL B . n B 1 23 THR 23 23 23 THR THR B . n B 1 24 PRO 24 24 24 PRO PRO B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 ALA 26 26 26 ALA ALA B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 TYR 28 28 28 TYR TYR B . n B 1 29 GLN 29 29 29 GLN GLN B . n B 1 30 TRP 30 30 30 TRP TRP B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 GLN 32 32 32 GLN GLN B . n B 1 33 ALA 33 33 33 ALA ALA B . n B 1 34 GLY 34 34 34 GLY GLY B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 ILE 36 36 36 ILE ILE B . n B 1 37 PRO 37 37 37 PRO PRO B . n B 1 38 PRO 38 38 38 PRO PRO B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 ARG 40 40 40 ARG ARG B . n B 1 41 GLN 41 41 41 GLN GLN B . n B 1 42 SER 42 42 42 SER SER B . n B 1 43 ASP 43 43 43 ASP ASP B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 ARG 47 47 47 ARG ARG B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 ALA 49 49 49 ALA ALA B . n B 1 50 TYR 50 50 50 TYR TYR B . n B 1 51 LYS 51 51 51 LYS LYS B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 SER 54 54 54 SER SER B . n B 1 55 ASP 55 55 55 ASP ASP B . n B 1 56 PHE 56 56 56 PHE PHE B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 SER 58 58 58 SER SER B . n B 1 59 GLN 59 59 59 GLN GLN B . n B 1 60 ARG 60 60 60 ARG ARG B . n B 1 61 MET 61 61 61 MET MET B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 LYS 63 63 63 LYS LYS B . n B 1 64 GLU 64 64 ? ? ? B . n B 1 65 GLY 65 65 ? ? ? B . n B 1 66 HIS 66 66 ? ? ? B . n B 1 67 ASN 67 67 ? ? ? B . n B 1 68 SER 68 68 ? ? ? B . n B 1 69 GLY 69 69 ? ? ? B . n B 1 70 THR 70 70 ? ? ? B . n B 1 71 LYS 71 71 ? ? ? B . n C 2 1 DT 1 1 1 DT DT C . n C 2 2 DT 2 2 2 DT DT C . n C 2 3 DT 3 3 3 DT DT C . n C 2 4 DA 4 4 4 DA DA C . n C 2 5 DT 5 5 5 DT DT C . n C 2 6 DA 6 6 6 DA DA C . n C 2 7 DG 7 7 7 DG DG C . n C 2 8 DC 8 8 8 DC DC C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DA 10 10 10 DA DA C . n C 2 11 DG 11 11 11 DG DG C . n C 2 12 DC 12 12 12 DC DC C . n C 2 13 DT 13 13 13 DT DT C . n C 2 14 DA 14 14 14 DA DA C . n C 2 15 DT 15 15 15 DT DT C . n C 2 16 DA 16 16 16 DA DA C . n C 2 17 DA 17 17 17 DA DA C . n D 2 1 DT 1 1 1 DT DT N . n D 2 2 DT 2 2 2 DT DT N . n D 2 3 DT 3 3 3 DT DT N . n D 2 4 DA 4 4 4 DA DA N . n D 2 5 DT 5 5 5 DT DT N . n D 2 6 DA 6 6 6 DA DA N . n D 2 7 DG 7 7 7 DG DG N . n D 2 8 DC 8 8 8 DC DC N . n D 2 9 DT 9 9 9 DT DT N . n D 2 10 DA 10 10 10 DA DA N . n D 2 11 DG 11 11 11 DG DG N . n D 2 12 DC 12 12 12 DC DC N . n D 2 13 DT 13 13 13 DT DT N . n D 2 14 DA 14 14 14 DA DA N . n D 2 15 DT 15 15 15 DT DT N . n D 2 16 DA 16 16 16 DA DA N . n D 2 17 DA 17 17 17 DA DA N . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 72 72 HOH HOH A . E 3 HOH 2 73 73 HOH HOH A . E 3 HOH 3 74 2 HOH HOH A . E 3 HOH 4 75 3 HOH HOH A . E 3 HOH 5 76 76 HOH HOH A . E 3 HOH 6 77 6 HOH HOH A . E 3 HOH 7 78 11 HOH HOH A . E 3 HOH 8 79 12 HOH HOH A . E 3 HOH 9 80 16 HOH HOH A . E 3 HOH 10 81 17 HOH HOH A . E 3 HOH 11 82 22 HOH HOH A . E 3 HOH 12 83 83 HOH HOH A . E 3 HOH 13 84 27 HOH HOH A . E 3 HOH 14 85 28 HOH HOH A . E 3 HOH 15 86 29 HOH HOH A . E 3 HOH 16 87 32 HOH HOH A . E 3 HOH 17 88 38 HOH HOH A . E 3 HOH 18 89 89 HOH HOH A . E 3 HOH 19 90 90 HOH HOH A . E 3 HOH 20 91 39 HOH HOH A . E 3 HOH 21 92 44 HOH HOH A . E 3 HOH 22 93 58 HOH HOH A . E 3 HOH 23 94 60 HOH HOH A . E 3 HOH 24 95 95 HOH HOH A . E 3 HOH 25 96 61 HOH HOH A . E 3 HOH 26 97 62 HOH HOH A . E 3 HOH 27 98 63 HOH HOH A . E 3 HOH 28 99 7 HOH HOH A . E 3 HOH 29 112 112 HOH HOH A . E 3 HOH 30 115 115 HOH HOH A . E 3 HOH 31 118 118 HOH HOH A . E 3 HOH 32 122 122 HOH HOH A . E 3 HOH 33 127 127 HOH HOH A . E 3 HOH 34 128 128 HOH HOH A . E 3 HOH 35 132 132 HOH HOH A . E 3 HOH 36 134 134 HOH HOH A . E 3 HOH 37 137 137 HOH HOH A . E 3 HOH 38 139 139 HOH HOH A . E 3 HOH 39 141 141 HOH HOH A . E 3 HOH 40 153 153 HOH HOH A . E 3 HOH 41 154 154 HOH HOH A . E 3 HOH 42 157 157 HOH HOH A . E 3 HOH 43 165 165 HOH HOH A . F 3 HOH 1 72 5 HOH HOH B . F 3 HOH 2 73 9 HOH HOH B . F 3 HOH 3 74 10 HOH HOH B . F 3 HOH 4 75 13 HOH HOH B . F 3 HOH 5 76 25 HOH HOH B . F 3 HOH 6 77 26 HOH HOH B . F 3 HOH 7 78 30 HOH HOH B . F 3 HOH 8 79 79 HOH HOH B . F 3 HOH 9 80 80 HOH HOH B . F 3 HOH 10 81 37 HOH HOH B . F 3 HOH 11 82 45 HOH HOH B . F 3 HOH 12 83 46 HOH HOH B . F 3 HOH 13 84 65 HOH HOH B . F 3 HOH 14 85 66 HOH HOH B . F 3 HOH 15 86 86 HOH HOH B . F 3 HOH 16 87 87 HOH HOH B . F 3 HOH 17 88 88 HOH HOH B . F 3 HOH 18 89 69 HOH HOH B . F 3 HOH 19 93 93 HOH HOH B . F 3 HOH 20 97 97 HOH HOH B . F 3 HOH 21 99 99 HOH HOH B . F 3 HOH 22 106 106 HOH HOH B . F 3 HOH 23 109 109 HOH HOH B . F 3 HOH 24 111 111 HOH HOH B . F 3 HOH 25 124 124 HOH HOH B . F 3 HOH 26 125 125 HOH HOH B . F 3 HOH 27 129 129 HOH HOH B . F 3 HOH 28 130 130 HOH HOH B . F 3 HOH 29 135 135 HOH HOH B . F 3 HOH 30 142 142 HOH HOH B . F 3 HOH 31 144 144 HOH HOH B . F 3 HOH 32 146 146 HOH HOH B . F 3 HOH 33 152 152 HOH HOH B . F 3 HOH 34 156 156 HOH HOH B . F 3 HOH 35 158 158 HOH HOH B . F 3 HOH 36 167 167 HOH HOH B . G 3 HOH 1 18 1 HOH HOH C . G 3 HOH 2 19 4 HOH HOH C . G 3 HOH 3 20 20 HOH HOH C . G 3 HOH 4 33 33 HOH HOH C . G 3 HOH 5 34 34 HOH HOH C . G 3 HOH 6 41 41 HOH HOH C . G 3 HOH 7 42 42 HOH HOH C . G 3 HOH 8 49 49 HOH HOH C . G 3 HOH 9 53 53 HOH HOH C . G 3 HOH 10 54 54 HOH HOH C . G 3 HOH 11 57 57 HOH HOH C . G 3 HOH 12 70 70 HOH HOH C . G 3 HOH 13 71 71 HOH HOH C . G 3 HOH 14 75 75 HOH HOH C . G 3 HOH 15 77 77 HOH HOH C . G 3 HOH 16 84 84 HOH HOH C . G 3 HOH 17 85 85 HOH HOH C . G 3 HOH 18 91 91 HOH HOH C . G 3 HOH 19 92 92 HOH HOH C . G 3 HOH 20 96 96 HOH HOH C . G 3 HOH 21 104 104 HOH HOH C . G 3 HOH 22 110 110 HOH HOH C . G 3 HOH 23 151 151 HOH HOH C . G 3 HOH 24 155 155 HOH HOH C . G 3 HOH 25 159 159 HOH HOH C . G 3 HOH 26 168 168 HOH HOH C . G 3 HOH 27 171 171 HOH HOH C . H 3 HOH 1 18 18 HOH HOH N . H 3 HOH 2 19 19 HOH HOH N . H 3 HOH 3 21 8 HOH HOH N . H 3 HOH 4 22 14 HOH HOH N . H 3 HOH 5 24 24 HOH HOH N . H 3 HOH 6 31 31 HOH HOH N . H 3 HOH 7 35 35 HOH HOH N . H 3 HOH 8 40 40 HOH HOH N . H 3 HOH 9 48 48 HOH HOH N . H 3 HOH 10 51 51 HOH HOH N . H 3 HOH 11 52 52 HOH HOH N . H 3 HOH 12 68 68 HOH HOH N . H 3 HOH 13 81 81 HOH HOH N . H 3 HOH 14 94 94 HOH HOH N . H 3 HOH 15 103 103 HOH HOH N . H 3 HOH 16 108 108 HOH HOH N . H 3 HOH 17 117 117 HOH HOH N . H 3 HOH 18 120 120 HOH HOH N . H 3 HOH 19 133 133 HOH HOH N . H 3 HOH 20 136 136 HOH HOH N . H 3 HOH 21 138 138 HOH HOH N . H 3 HOH 22 143 143 HOH HOH N . H 3 HOH 23 145 145 HOH HOH N . H 3 HOH 24 147 147 HOH HOH N . H 3 HOH 25 148 148 HOH HOH N . H 3 HOH 26 149 149 HOH HOH N . H 3 HOH 27 150 150 HOH HOH N . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-29 2 'Structure model' 1 1 2019-05-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -17.1925 28.3888 24.2308 0.2629 0.2001 0.3494 0.0400 0.0004 -0.0190 1.8316 2.4954 14.9726 2.0254 -1.5411 1.2457 0.0327 0.0422 0.5437 -0.0791 -0.1377 0.7009 -0.6340 -0.7204 0.1050 'X-RAY DIFFRACTION' 2 ? refined -13.1129 22.9328 30.9359 0.2902 0.1302 0.2741 0.0132 0.0133 0.0208 6.0201 7.7866 9.4964 3.3028 0.0372 2.2192 -0.1440 -0.2933 0.1084 0.1118 -0.0897 0.3207 0.0813 -0.4063 0.2336 'X-RAY DIFFRACTION' 3 ? refined -6.0835 25.8028 27.4008 0.2504 0.1619 0.2655 0.0199 -0.0045 0.0201 2.1888 0.8694 2.6186 -0.0847 0.1661 0.9828 -0.0720 -0.0607 -0.0215 0.1047 0.0307 0.0617 0.0367 0.0538 0.0413 'X-RAY DIFFRACTION' 4 ? refined -10.4833 33.2462 21.1611 0.2907 0.1467 0.3150 0.0015 -0.0149 0.0286 3.6839 3.4144 5.0388 0.7411 1.7937 3.9263 -0.1566 -0.0497 0.2890 -0.4723 -0.0077 0.2257 -0.5308 -0.2330 0.1643 'X-RAY DIFFRACTION' 5 ? refined -11.0026 21.7410 16.4134 0.2438 0.1981 0.2749 -0.0126 -0.0054 0.0259 1.2852 3.5123 2.0571 -0.4960 1.4601 0.5987 0.0170 0.1060 0.0484 -0.1204 -0.0265 0.0514 0.0740 0.0668 0.0095 'X-RAY DIFFRACTION' 6 ? refined -16.9686 18.7654 18.0034 0.2239 0.1907 0.3074 -0.0135 -0.0114 -0.0053 1.9744 4.6297 2.8421 0.4147 -0.3470 -0.4843 -0.0906 0.0525 0.0758 0.0877 0.0223 0.1085 0.0671 -0.1554 0.0683 'X-RAY DIFFRACTION' 7 ? refined -24.6695 23.0982 11.6483 0.3980 0.4460 0.5030 0.2792 -0.1841 -0.0672 39.0949 0.3664 1.9684 9.1023 -9.2357 -1.4382 0.3706 0.3290 0.1290 0.0813 -0.1860 0.1058 -0.2806 -0.3290 -0.1846 'X-RAY DIFFRACTION' 8 ? refined -5.9979 10.1813 1.1884 0.4391 0.1747 0.3299 -0.0716 0.0612 -0.0728 3.0162 6.4222 9.0566 4.2244 3.1714 1.8112 -0.1812 0.1503 -0.1263 -0.4128 0.0485 -0.2152 0.7330 0.2292 0.1327 'X-RAY DIFFRACTION' 9 ? refined -9.8314 16.7869 -5.1823 0.3178 0.3149 0.2217 -0.0743 -0.0614 0.0081 5.8724 3.2065 9.4963 1.4470 -3.5466 0.6417 -0.1859 0.2342 -0.4937 -0.3847 0.0756 0.1027 0.4334 -0.2618 0.1102 'X-RAY DIFFRACTION' 10 ? refined -3.7185 21.7116 -1.3643 0.3065 0.2280 0.2370 -0.0208 -0.0032 0.0303 1.6369 2.8678 2.9884 0.2392 -1.5446 -1.1944 -0.1589 0.2833 -0.0641 -0.2346 -0.0309 -0.0268 -0.1014 0.0189 0.1898 'X-RAY DIFFRACTION' 11 ? refined 0.5233 14.3969 3.2421 0.3535 0.2470 0.2764 0.0532 0.0673 0.0586 3.5553 8.7391 10.0877 -0.2844 -3.2575 2.9397 -0.2586 0.0276 -0.1201 -0.1400 0.2068 -0.6404 0.6263 0.7712 0.0518 'X-RAY DIFFRACTION' 12 ? refined -8.7847 17.9170 10.1267 0.2610 0.1545 0.2961 -0.0060 -0.0018 0.0143 1.9053 1.4576 4.3206 -0.8607 -1.6834 -0.9467 -0.1384 0.0371 -0.0481 0.0457 0.0697 -0.0542 -0.0542 -0.1875 0.0687 'X-RAY DIFFRACTION' 13 ? refined -13.5117 12.7446 9.7369 0.2453 0.3272 0.3270 -0.0912 0.0084 0.0418 0.9725 7.6768 6.1321 -1.7045 2.1487 -0.7596 0.0388 0.0635 0.0245 -0.2725 -0.1920 0.2976 0.1026 -0.2872 0.1532 'X-RAY DIFFRACTION' 14 ? refined -10.7600 3.1904 15.5849 0.3759 0.1393 0.3470 -0.0425 0.0552 0.0109 9.8270 11.4295 8.9778 2.3842 2.5336 -1.5306 0.0244 0.5978 -0.2589 -0.6541 -0.0598 -0.9814 0.6885 0.4622 0.0354 'X-RAY DIFFRACTION' 15 ? refined 4.8603 19.4852 -9.0106 0.3796 0.3203 0.2952 0.0408 -0.0106 0.0033 4.0788 6.3685 3.1906 0.4382 -3.1465 -3.1665 -0.1508 0.0164 -0.1855 0.1405 -0.0700 -0.4247 0.0710 0.0440 0.2209 'X-RAY DIFFRACTION' 16 ? refined 10.3926 28.8446 1.8509 0.4848 0.5254 0.3138 -0.1175 0.1185 0.1561 9.7543 5.2006 15.6839 -0.0542 -7.2559 7.6652 1.5234 -0.0427 0.5997 -0.1314 0.2587 -1.0364 -1.2686 0.7028 -1.7821 'X-RAY DIFFRACTION' 17 ? refined 1.3345 30.7216 16.5300 0.2603 0.2059 0.2803 -0.0178 -0.0079 0.0341 2.9946 2.2219 2.9510 0.2002 0.8631 1.4592 -0.1113 0.1690 0.2777 -0.2150 0.0400 -0.0774 -0.3142 0.1337 0.0713 'X-RAY DIFFRACTION' 18 ? refined 7.0342 33.2782 32.1929 0.3099 0.3761 0.3753 -0.0837 -0.0069 -0.1205 0.2597 0.2003 2.2730 -0.3547 0.9130 -0.8156 0.0398 0.1043 0.0188 0.0315 -0.0062 -0.1064 -0.1401 0.3927 -0.0336 'X-RAY DIFFRACTION' 19 ? refined -2.7589 35.2187 33.8119 0.3333 0.1897 0.2814 -0.0129 -0.0427 0.0019 3.0519 0.0874 3.3802 -0.5081 -0.3781 0.0773 -0.0056 -0.0311 0.1982 0.0953 0.0058 -0.0926 -0.3209 0.1266 -0.0002 'X-RAY DIFFRACTION' 20 ? refined 7.7656 33.7121 21.1520 0.2908 0.3940 0.3393 -0.1294 -0.0326 -0.0559 2.7491 5.5726 2.2141 -0.9106 -1.7589 2.4649 -0.0375 -0.1123 0.4814 -0.1200 0.6019 -0.7186 -0.2724 0.6217 -0.5644 'X-RAY DIFFRACTION' 21 ? refined 3.0811 25.2565 6.9488 0.2932 0.2665 0.2404 -0.0631 -0.0005 0.0564 0.5586 2.9041 1.9722 -0.1274 0.5870 1.4290 -0.0213 -0.0078 -0.0565 -0.0750 0.1142 -0.1759 -0.3070 0.2482 -0.0929 'X-RAY DIFFRACTION' 22 ? refined 7.1952 29.2400 -7.6102 0.4045 0.4005 0.5645 -0.1203 0.0422 0.0732 2.7322 5.0241 6.7344 -1.8878 -1.5279 -5.6548 0.1849 0.2355 1.2881 0.2366 -0.1202 -1.0732 -0.3160 -0.0414 -0.0647 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 5 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 6 ? ? A 14 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 15 ? ? A 31 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 32 ? ? A 37 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 38 ? ? A 46 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 47 ? ? A 56 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 57 ? ? A 62 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 1 ? ? B 6 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 7 ? ? B 17 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 18 ? ? B 29 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 B 30 ? ? B 37 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 B 38 ? ? B 46 ? ? ? ? 'X-RAY DIFFRACTION' 13 13 B 47 ? ? B 58 ? ? ? ? 'X-RAY DIFFRACTION' 14 14 B 59 ? ? B 63 ? ? ? ? 'X-RAY DIFFRACTION' 15 15 C 1 ? ? C 4 ? ? ? ? 'X-RAY DIFFRACTION' 16 16 C 5 ? ? C 8 ? ? ? ? 'X-RAY DIFFRACTION' 17 17 C 9 ? ? C 13 ? ? ? ? 'X-RAY DIFFRACTION' 18 18 C 14 ? ? C 17 ? ? ? ? 'X-RAY DIFFRACTION' 19 19 N 1 ? ? N 4 ? ? ? ? 'X-RAY DIFFRACTION' 20 20 N 5 ? ? N 9 ? ? ? ? 'X-RAY DIFFRACTION' 21 21 N 10 ? ? N 13 ? ? ? ? 'X-RAY DIFFRACTION' 22 22 N 14 ? ? N 17 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 95 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 72 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_455 _pdbx_validate_symm_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" C DT 9 ? ? "C3'" C DT 9 ? ? 1.378 1.419 -0.041 0.006 N 2 1 "O3'" N DT 15 ? ? "C3'" N DT 15 ? ? 1.380 1.419 -0.039 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C DT 5 ? ? "C2'" C DT 5 ? ? "C1'" C DT 5 ? ? 97.55 102.40 -4.85 0.80 N 2 1 "O4'" C DT 5 ? ? "C1'" C DT 5 ? ? "C2'" C DT 5 ? ? 100.97 105.90 -4.93 0.80 N 3 1 "O4'" C DT 5 ? ? "C1'" C DT 5 ? ? N1 C DT 5 ? ? 112.08 108.30 3.78 0.30 N 4 1 "C3'" C DG 7 ? ? "C2'" C DG 7 ? ? "C1'" C DG 7 ? ? 97.09 102.40 -5.31 0.80 N 5 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 110.87 108.30 2.57 0.30 N 6 1 "O4'" C DC 8 ? ? "C1'" C DC 8 ? ? N1 C DC 8 ? ? 102.07 108.00 -5.93 0.70 N 7 1 "O4'" C DA 10 ? ? "C1'" C DA 10 ? ? N9 C DA 10 ? ? 101.83 108.00 -6.17 0.70 N 8 1 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 110.38 108.30 2.08 0.30 N 9 1 "O4'" C DA 14 ? ? "C1'" C DA 14 ? ? N9 C DA 14 ? ? 102.88 108.00 -5.12 0.70 N 10 1 N1 C DT 15 ? ? "C1'" C DT 15 ? ? "C2'" C DT 15 ? ? 123.34 114.30 9.04 1.40 N 11 1 "O4'" C DT 15 ? ? "C1'" C DT 15 ? ? N1 C DT 15 ? ? 103.47 108.00 -4.53 0.70 N 12 1 "O4'" C DA 16 ? ? "C1'" C DA 16 ? ? N9 C DA 16 ? ? 110.60 108.30 2.30 0.30 N 13 1 "O4'" N DT 3 ? ? "C1'" N DT 3 ? ? N1 N DT 3 ? ? 101.51 108.00 -6.49 0.70 N 14 1 "C1'" N DT 5 ? ? "O4'" N DT 5 ? ? "C4'" N DT 5 ? ? 103.66 110.10 -6.44 1.00 N 15 1 "C3'" N DT 5 ? ? "C2'" N DT 5 ? ? "C1'" N DT 5 ? ? 96.78 102.40 -5.62 0.80 N 16 1 "O4'" N DT 5 ? ? "C1'" N DT 5 ? ? "C2'" N DT 5 ? ? 100.51 105.90 -5.39 0.80 N 17 1 "O4'" N DT 5 ? ? "C1'" N DT 5 ? ? N1 N DT 5 ? ? 113.16 108.30 4.86 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DT 1 ? "O5'" ? C DT 1 "O5'" 2 1 Y 1 N DT 1 ? "O5'" ? D DT 1 "O5'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 63 ? A LYS 63 2 1 Y 1 A GLU 64 ? A GLU 64 3 1 Y 1 A GLY 65 ? A GLY 65 4 1 Y 1 A HIS 66 ? A HIS 66 5 1 Y 1 A ASN 67 ? A ASN 67 6 1 Y 1 A SER 68 ? A SER 68 7 1 Y 1 A GLY 69 ? A GLY 69 8 1 Y 1 A THR 70 ? A THR 70 9 1 Y 1 A LYS 71 ? A LYS 71 10 1 Y 1 B GLU 64 ? B GLU 64 11 1 Y 1 B GLY 65 ? B GLY 65 12 1 Y 1 B HIS 66 ? B HIS 66 13 1 Y 1 B ASN 67 ? B ASN 67 14 1 Y 1 B SER 68 ? B SER 68 15 1 Y 1 B GLY 69 ? B GLY 69 16 1 Y 1 B THR 70 ? B THR 70 17 1 Y 1 B LYS 71 ? B LYS 71 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3QWS 'double helix' 3QWS 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 2 1_555 D DA 17 1_555 -0.061 -0.062 0.254 -1.626 -11.564 -2.774 1 C_DT2:DA17_N C 2 ? N 17 ? 20 1 1 C DT 3 1_555 D DA 16 1_555 -0.363 -0.094 0.121 -5.084 -15.295 5.468 2 C_DT3:DA16_N C 3 ? N 16 ? 20 1 1 C DA 4 1_555 D DT 15 1_555 0.208 -0.006 0.500 2.250 -12.685 2.743 3 C_DA4:DT15_N C 4 ? N 15 ? 20 1 1 C DT 5 1_555 D DA 14 1_555 0.234 -0.005 -0.064 8.336 -5.951 4.139 4 C_DT5:DA14_N C 5 ? N 14 ? 20 1 1 C DA 6 1_555 D DT 13 1_555 0.118 -0.154 0.152 -5.285 -9.887 -3.771 5 C_DA6:DT13_N C 6 ? N 13 ? 20 1 1 C DG 7 1_555 D DC 12 1_555 0.134 -0.219 0.248 0.837 -22.346 -3.690 6 C_DG7:DC12_N C 7 ? N 12 ? 19 1 1 C DC 8 1_555 D DG 11 1_555 0.214 -0.119 0.376 -10.580 -8.991 -0.534 7 C_DC8:DG11_N C 8 ? N 11 ? 19 1 1 C DT 9 1_555 D DA 10 1_555 -0.598 0.068 0.070 -0.790 -15.115 -1.141 8 C_DT9:DA10_N C 9 ? N 10 ? 20 1 1 C DA 10 1_555 D DT 9 1_555 0.076 -0.053 -0.084 0.226 -11.393 -4.054 9 C_DA10:DT9_N C 10 ? N 9 ? 20 1 1 C DG 11 1_555 D DC 8 1_555 -0.198 -0.093 0.428 12.890 -10.468 1.274 10 C_DG11:DC8_N C 11 ? N 8 ? 19 1 1 C DC 12 1_555 D DG 7 1_555 0.433 -0.076 0.342 5.084 -23.285 3.737 11 C_DC12:DG7_N C 12 ? N 7 ? 19 1 1 C DT 13 1_555 D DA 6 1_555 -0.063 -0.171 0.077 3.455 -10.310 -0.971 12 C_DT13:DA6_N C 13 ? N 6 ? 20 1 1 C DA 14 1_555 D DT 5 1_555 0.142 -0.037 -0.003 -12.166 -6.283 3.738 13 C_DA14:DT5_N C 14 ? N 5 ? 20 1 1 C DT 15 1_555 D DA 4 1_555 -0.170 0.018 0.230 -2.211 -11.220 6.205 14 C_DT15:DA4_N C 15 ? N 4 ? 20 1 1 C DA 16 1_555 D DT 3 1_555 0.321 0.044 -0.122 -0.807 -13.061 6.490 15 C_DA16:DT3_N C 16 ? N 3 ? 20 1 1 C DA 17 1_555 D DT 2 1_555 0.058 -0.161 0.156 1.351 -9.648 -1.802 16 C_DA17:DT2_N C 17 ? N 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 2 1_555 D DA 17 1_555 C DT 3 1_555 D DA 16 1_555 -0.122 -0.413 3.320 1.571 2.649 30.870 -1.287 0.533 3.264 4.960 -2.941 31.019 1 CC_DT2DT3:DA16DA17_NN C 2 ? N 17 ? C 3 ? N 16 ? 1 C DT 3 1_555 D DA 16 1_555 C DA 4 1_555 D DT 15 1_555 0.236 0.214 3.180 -5.486 6.607 38.571 -0.441 -0.979 3.113 9.854 8.181 39.480 2 CC_DT3DA4:DT15DA16_NN C 3 ? N 16 ? C 4 ? N 15 ? 1 C DA 4 1_555 D DT 15 1_555 C DT 5 1_555 D DA 14 1_555 0.033 -0.719 3.135 5.367 1.549 22.597 -2.290 1.678 3.006 3.877 -13.435 23.268 3 CC_DA4DT5:DA14DT15_NN C 4 ? N 15 ? C 5 ? N 14 ? 1 C DT 5 1_555 D DA 14 1_555 C DA 6 1_555 D DT 13 1_555 -0.946 0.263 3.661 -4.964 -0.218 41.235 0.398 0.736 3.744 -0.308 7.018 41.521 4 CC_DT5DA6:DT13DA14_NN C 5 ? N 14 ? C 6 ? N 13 ? 1 C DA 6 1_555 D DT 13 1_555 C DG 7 1_555 D DC 12 1_555 0.501 -0.163 3.159 -0.531 6.291 34.643 -1.169 -0.905 3.075 10.457 0.882 35.196 5 CC_DA6DG7:DC12DT13_NN C 6 ? N 13 ? C 7 ? N 12 ? 1 C DG 7 1_555 D DC 12 1_555 C DC 8 1_555 D DG 11 1_555 -0.617 0.020 3.497 -3.785 -4.252 39.517 0.557 0.433 3.518 -6.249 5.563 39.909 6 CC_DG7DC8:DG11DC12_NN C 7 ? N 12 ? C 8 ? N 11 ? 1 C DC 8 1_555 D DG 11 1_555 C DT 9 1_555 D DA 10 1_555 -0.649 0.369 3.051 2.726 5.183 23.468 -0.659 2.359 2.968 12.494 -6.571 24.177 7 CC_DC8DT9:DA10DG11_NN C 8 ? N 11 ? C 9 ? N 10 ? 1 C DT 9 1_555 D DA 10 1_555 C DA 10 1_555 D DT 9 1_555 -0.179 2.866 3.168 -0.152 -14.991 55.415 3.700 0.180 2.384 -15.800 0.160 57.251 8 CC_DT9DA10:DT9DA10_NN C 9 ? N 10 ? C 10 ? N 9 ? 1 C DA 10 1_555 D DT 9 1_555 C DG 11 1_555 D DC 8 1_555 0.923 0.498 3.009 -3.998 4.522 26.644 0.028 -2.864 2.885 9.654 8.535 27.307 9 CC_DA10DG11:DC8DT9_NN C 10 ? N 9 ? C 11 ? N 8 ? 1 C DG 11 1_555 D DC 8 1_555 C DC 12 1_555 D DG 7 1_555 -0.023 -0.340 3.480 -0.341 -3.341 35.609 -0.039 -0.014 3.497 -5.448 0.557 35.762 10 CC_DG11DC12:DG7DC8_NN C 11 ? N 8 ? C 12 ? N 7 ? 1 C DC 12 1_555 D DG 7 1_555 C DT 13 1_555 D DA 6 1_555 -0.249 -0.430 3.179 4.607 6.838 37.265 -1.486 0.939 3.006 10.544 -7.103 38.135 11 CC_DC12DT13:DA6DG7_NN C 12 ? N 7 ? C 13 ? N 6 ? 1 C DT 13 1_555 D DA 6 1_555 C DA 14 1_555 D DT 5 1_555 0.535 0.219 3.606 1.923 -0.531 44.649 0.342 -0.509 3.622 -0.698 -2.530 44.692 12 CC_DT13DA14:DT5DA6_NN C 13 ? N 6 ? C 14 ? N 5 ? 1 C DA 14 1_555 D DT 5 1_555 C DT 15 1_555 D DA 4 1_555 -0.261 -0.606 3.062 -1.511 3.606 22.379 -2.741 0.158 2.940 9.200 3.855 22.714 13 CC_DA14DT15:DA4DT5_NN C 14 ? N 5 ? C 15 ? N 4 ? 1 C DT 15 1_555 D DA 4 1_555 C DA 16 1_555 D DT 3 1_555 -0.329 0.306 3.332 2.159 5.695 34.204 -0.380 0.889 3.312 9.589 -3.634 34.726 14 CC_DT15DA16:DT3DA4_NN C 15 ? N 4 ? C 16 ? N 3 ? 1 C DA 16 1_555 D DT 3 1_555 C DA 17 1_555 D DT 2 1_555 0.340 -0.434 3.159 -2.779 3.140 32.031 -1.312 -1.082 3.064 5.660 5.009 32.297 15 CC_DA16DA17:DT2DT3_NN C 16 ? N 3 ? C 17 ? N 2 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #