HEADER ISOMERASE/DNA/ISOMERASE INHIBITOR 01-MAR-11 3QX3 TITLE HUMAN TOPOISOMERASE IIBETA IN COMPLEX WITH DNA AND ETOPOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2-BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206; COMPND 5 SYNONYM: DNA TOPOISOMERASE II, BETA ISOZYME; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'); COMPND 10 CHAIN: C, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3'); COMPND 14 CHAIN: D, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TOP2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET51B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE OLIGONUCLEOTIDE SEQUENCE 5'-AGCCGAGCTGCAGCTCGGCT- SOURCE 14 3' WAS PURCHASED FROM VIOGENE.; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: THE OLIGONUCLEOTIDE SEQUENCE 5'-AGCCGAGCTGCAGCTCGGCT- SOURCE 18 3' WAS PURCHASED FROM VIOGENE. KEYWDS TOPRIM DOMAIN, WINGED-HELIX DOMAIN, COILED-COIL DOMAIN, DNA BINDING KEYWDS 2 AND CLEAVAGE, NUCLEUS, ISOMERASE-DNA-ISOMERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.C.WU,T.K.LI,L.FARH,L.Y.LIN,T.S.LIN,Y.J.YU,T.J.YEN,C.W.CHIANG, AUTHOR 2 N.L.CHAN REVDAT 3 01-NOV-23 3QX3 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK REVDAT 2 25-JAN-12 3QX3 1 JRNL VERSN REVDAT 1 06-JUL-11 3QX3 0 JRNL AUTH C.C.WU,T.K.LI,L.FARH,L.Y.LIN,T.S.LIN,Y.J.YU,T.J.YEN, JRNL AUTH 2 C.W.CHIANG,N.L.CHAN JRNL TITL STRUCTURAL BASIS OF TYPE II TOPOISOMERASE INHIBITION BY THE JRNL TITL 2 ANTICANCER DRUG ETOPOSIDE JRNL REF SCIENCE V. 333 459 2011 JRNL REFN ISSN 0036-8075 JRNL PMID 21778401 JRNL DOI 10.1126/SCIENCE.1204117 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 117720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5462 - 4.6522 0.90 11184 581 0.1726 0.1982 REMARK 3 2 4.6522 - 3.6949 0.92 11317 625 0.1397 0.1686 REMARK 3 3 3.6949 - 3.2285 0.95 11700 594 0.1513 0.1895 REMARK 3 4 3.2285 - 2.9336 0.95 11605 652 0.1656 0.2181 REMARK 3 5 2.9336 - 2.7235 0.94 11577 630 0.1712 0.2131 REMARK 3 6 2.7235 - 2.5630 0.93 11420 574 0.1781 0.2357 REMARK 3 7 2.5630 - 2.4347 0.91 11223 576 0.1902 0.2316 REMARK 3 8 2.4347 - 2.3288 0.90 11012 576 0.1945 0.2482 REMARK 3 9 2.3288 - 2.2391 0.87 10652 537 0.2097 0.2689 REMARK 3 10 2.2391 - 2.1619 0.82 10113 572 0.2325 0.2882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 40.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.31550 REMARK 3 B22 (A**2) : 1.07170 REMARK 3 B33 (A**2) : 3.91190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.99530 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 12326 REMARK 3 ANGLE : 1.058 16825 REMARK 3 CHIRALITY : 0.069 1857 REMARK 3 PLANARITY : 0.004 2017 REMARK 3 DIHEDRAL : 15.442 4791 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : FIXED-EXIT DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (CRYSTAL TYPE SI(1 REMARK 200 1 1)) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : 0.47200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.6.4_486 REMARK 200 STARTING MODEL: PDB ENTRY 3L4K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM ACETATE, 50MM 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID PH 5.8, 22% 2-METHYL-2, 4- REMARK 280 PENTANEDIOL (MPT), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 88.40050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 419 REMARK 465 ALA A 420 REMARK 465 SER A 421 REMARK 465 TRP A 422 REMARK 465 SER A 423 REMARK 465 HIS A 424 REMARK 465 PRO A 425 REMARK 465 GLN A 426 REMARK 465 PHE A 427 REMARK 465 GLU A 428 REMARK 465 LYS A 429 REMARK 465 GLY A 430 REMARK 465 ALA A 431 REMARK 465 ASP A 432 REMARK 465 ASP A 433 REMARK 465 ASP A 434 REMARK 465 ASP A 435 REMARK 465 LYS A 436 REMARK 465 VAL A 437 REMARK 465 PRO A 438 REMARK 465 ASP A 439 REMARK 465 PRO A 440 REMARK 465 THR A 441 REMARK 465 SER A 442 REMARK 465 VAL A 443 REMARK 465 ASP A 444 REMARK 465 SER A 445 REMARK 465 VAL A 446 REMARK 465 LYS A 447 REMARK 465 TYR A 448 REMARK 465 SER A 449 REMARK 465 LYS A 450 REMARK 465 ILE A 451 REMARK 465 PRO A 592 REMARK 465 ILE A 593 REMARK 465 VAL A 594 REMARK 465 LYS A 595 REMARK 465 ALA A 596 REMARK 465 SER A 597 REMARK 465 LYS A 598 REMARK 465 ASN A 599 REMARK 465 LYS A 600 REMARK 465 GLN A 601 REMARK 465 GLU A 602 REMARK 465 LEU A 603 REMARK 465 SER A 604 REMARK 465 PHE A 605 REMARK 465 TYR A 606 REMARK 465 SER A 607 REMARK 465 ILE A 608 REMARK 465 PRO A 609 REMARK 465 GLU A 610 REMARK 465 PHE A 611 REMARK 465 ASP A 612 REMARK 465 GLU A 613 REMARK 465 TRP A 614 REMARK 465 LYS A 615 REMARK 465 LYS A 616 REMARK 465 HIS A 617 REMARK 465 ILE A 618 REMARK 465 GLU A 619 REMARK 465 ASN A 620 REMARK 465 GLN A 621 REMARK 465 LYS A 622 REMARK 465 ALA A 623 REMARK 465 TRP A 624 REMARK 465 LYS A 625 REMARK 465 ILE A 626 REMARK 465 LYS A 627 REMARK 465 TYR A 628 REMARK 465 TYR A 629 REMARK 465 LYS A 630 REMARK 465 GLY A 631 REMARK 465 LEU A 632 REMARK 465 GLY A 633 REMARK 465 THR A 634 REMARK 465 SER A 635 REMARK 465 THR A 636 REMARK 465 ALA A 637 REMARK 465 PRO A 697 REMARK 465 GLU A 698 REMARK 465 GLN A 699 REMARK 465 PHE A 700 REMARK 465 LEU A 701 REMARK 465 TYR A 702 REMARK 465 GLY A 703 REMARK 465 THR A 704 REMARK 465 ALA A 705 REMARK 465 THR A 706 REMARK 465 LYS A 1112 REMARK 465 ALA A 1113 REMARK 465 ALA A 1114 REMARK 465 GLU A 1115 REMARK 465 GLU A 1116 REMARK 465 ASP A 1117 REMARK 465 GLU A 1118 REMARK 465 THR A 1119 REMARK 465 GLN A 1120 REMARK 465 ASN A 1121 REMARK 465 GLN A 1122 REMARK 465 HIS A 1123 REMARK 465 ASP A 1124 REMARK 465 ASP A 1125 REMARK 465 SER A 1126 REMARK 465 SER A 1127 REMARK 465 SER A 1128 REMARK 465 ASP A 1129 REMARK 465 SER A 1130 REMARK 465 GLY A 1131 REMARK 465 THR A 1132 REMARK 465 PRO A 1133 REMARK 465 SER A 1134 REMARK 465 GLY A 1202 REMARK 465 ALA A 1203 REMARK 465 PRO A 1204 REMARK 465 GLY A 1205 REMARK 465 PHE A 1206 REMARK 465 SER A 1207 REMARK 465 SER A 1208 REMARK 465 ILE A 1209 REMARK 465 SER A 1210 REMARK 465 ALA A 1211 REMARK 465 HIS A 1212 REMARK 465 HIS A 1213 REMARK 465 HIS A 1214 REMARK 465 HIS A 1215 REMARK 465 HIS A 1216 REMARK 465 HIS A 1217 REMARK 465 HIS A 1218 REMARK 465 HIS A 1219 REMARK 465 HIS A 1220 REMARK 465 HIS A 1221 REMARK 465 MET B 419 REMARK 465 ALA B 420 REMARK 465 SER B 421 REMARK 465 TRP B 422 REMARK 465 SER B 423 REMARK 465 HIS B 424 REMARK 465 PRO B 425 REMARK 465 GLN B 426 REMARK 465 PHE B 427 REMARK 465 GLU B 428 REMARK 465 LYS B 429 REMARK 465 GLY B 430 REMARK 465 ALA B 431 REMARK 465 ASP B 432 REMARK 465 ASP B 433 REMARK 465 ASP B 434 REMARK 465 ASP B 435 REMARK 465 LYS B 436 REMARK 465 VAL B 437 REMARK 465 PRO B 438 REMARK 465 ASP B 439 REMARK 465 PRO B 440 REMARK 465 THR B 441 REMARK 465 SER B 442 REMARK 465 VAL B 443 REMARK 465 ASP B 444 REMARK 465 SER B 445 REMARK 465 VAL B 446 REMARK 465 LYS B 447 REMARK 465 TYR B 448 REMARK 465 ILE B 593 REMARK 465 VAL B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 SER B 597 REMARK 465 LYS B 598 REMARK 465 ASN B 599 REMARK 465 LYS B 600 REMARK 465 GLN B 601 REMARK 465 GLU B 602 REMARK 465 LEU B 603 REMARK 465 SER B 604 REMARK 465 PHE B 605 REMARK 465 TYR B 606 REMARK 465 SER B 607 REMARK 465 ILE B 608 REMARK 465 PRO B 609 REMARK 465 GLU B 610 REMARK 465 PHE B 611 REMARK 465 ASP B 612 REMARK 465 GLU B 613 REMARK 465 TRP B 614 REMARK 465 LYS B 615 REMARK 465 LYS B 616 REMARK 465 HIS B 617 REMARK 465 ILE B 618 REMARK 465 GLU B 619 REMARK 465 ASN B 620 REMARK 465 GLN B 621 REMARK 465 LYS B 622 REMARK 465 ALA B 623 REMARK 465 TRP B 624 REMARK 465 LYS B 625 REMARK 465 ILE B 626 REMARK 465 LYS B 627 REMARK 465 TYR B 628 REMARK 465 TYR B 629 REMARK 465 LYS B 630 REMARK 465 GLY B 631 REMARK 465 LEU B 632 REMARK 465 GLY B 633 REMARK 465 THR B 634 REMARK 465 SER B 635 REMARK 465 THR B 636 REMARK 465 LEU B 696 REMARK 465 PRO B 697 REMARK 465 GLU B 698 REMARK 465 GLN B 699 REMARK 465 PHE B 700 REMARK 465 LEU B 701 REMARK 465 TYR B 702 REMARK 465 GLY B 703 REMARK 465 THR B 704 REMARK 465 ALA B 705 REMARK 465 THR B 963 REMARK 465 ASP B 964 REMARK 465 LYS B 965 REMARK 465 THR B 966 REMARK 465 GLU B 1111 REMARK 465 LYS B 1112 REMARK 465 ALA B 1113 REMARK 465 ALA B 1114 REMARK 465 GLU B 1115 REMARK 465 GLU B 1116 REMARK 465 ASP B 1117 REMARK 465 GLU B 1118 REMARK 465 THR B 1119 REMARK 465 GLN B 1120 REMARK 465 ASN B 1121 REMARK 465 GLN B 1122 REMARK 465 HIS B 1123 REMARK 465 ASP B 1124 REMARK 465 ASP B 1125 REMARK 465 SER B 1126 REMARK 465 SER B 1127 REMARK 465 SER B 1128 REMARK 465 ASP B 1129 REMARK 465 SER B 1130 REMARK 465 GLY B 1131 REMARK 465 THR B 1132 REMARK 465 PRO B 1133 REMARK 465 SER B 1134 REMARK 465 GLY B 1202 REMARK 465 ALA B 1203 REMARK 465 PRO B 1204 REMARK 465 GLY B 1205 REMARK 465 PHE B 1206 REMARK 465 SER B 1207 REMARK 465 SER B 1208 REMARK 465 ILE B 1209 REMARK 465 SER B 1210 REMARK 465 ALA B 1211 REMARK 465 HIS B 1212 REMARK 465 HIS B 1213 REMARK 465 HIS B 1214 REMARK 465 HIS B 1215 REMARK 465 HIS B 1216 REMARK 465 HIS B 1217 REMARK 465 HIS B 1218 REMARK 465 HIS B 1219 REMARK 465 HIS B 1220 REMARK 465 HIS B 1221 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 1193 CA CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG F 1 O HOH F 871 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 743 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA C 1 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C 2 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG D 13 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC D 19 C1' - O4' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DG E 2 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG E 5 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA E 6 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG E 7 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC E 8 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT F 9 O4' - C1' - N1 ANGL. DEV. = -4.6 DEGREES REMARK 500 DA F 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG F 13 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC F 16 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG F 17 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC F 19 P - O5' - C5' ANGL. DEV. = -9.8 DEGREES REMARK 500 DC F 19 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 503 38.51 -92.55 REMARK 500 ARG A 503 40.28 -93.94 REMARK 500 LYS A 535 -22.45 74.63 REMARK 500 TYR A 538 65.77 -119.86 REMARK 500 GLN A 558 45.03 -78.12 REMARK 500 HIS A 694 -104.56 -97.34 REMARK 500 SER A 794 -111.01 -99.71 REMARK 500 PHE A 834 75.46 -119.86 REMARK 500 ASN A 849 -9.73 73.54 REMARK 500 VAL A 852 -142.86 -121.42 REMARK 500 VAL A 955 -55.45 -124.28 REMARK 500 ASP A1101 106.70 -35.11 REMARK 500 ARG B 503 44.00 -96.03 REMARK 500 ARG B 503 41.15 -93.88 REMARK 500 LYS B 535 -5.21 74.59 REMARK 500 TYR B 538 57.06 -103.69 REMARK 500 HIS B 694 -124.37 -133.18 REMARK 500 ASN B 790 18.28 -141.96 REMARK 500 SER B 794 -112.17 -100.08 REMARK 500 ASN B 849 -19.20 79.12 REMARK 500 VAL B 852 -143.82 -120.18 REMARK 500 PRO B 862 90.67 -68.93 REMARK 500 VAL B 932 -66.41 -92.06 REMARK 500 ASN B 935 -12.45 91.59 REMARK 500 ASN B 961 -118.39 -100.71 REMARK 500 ASP B1101 104.23 -24.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1222 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 557 OD2 REMARK 620 2 ASP A 559 OD2 99.8 REMARK 620 3 HOH A1333 O 100.0 89.4 REMARK 620 4 HOH A1348 O 80.4 90.3 179.5 REMARK 620 5 HOH C 633 O 168.3 77.9 91.5 88.1 REMARK 620 6 HOH C 795 O 90.8 169.3 90.8 89.5 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1223 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1466 O REMARK 620 2 HOH A1467 O 60.6 REMARK 620 3 HOH C1143 O 58.5 117.4 REMARK 620 4 HOH C1145 O 71.9 71.5 77.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 46 O REMARK 620 2 ASP B 557 OD2 87.3 REMARK 620 3 ASP B 559 OD2 87.0 102.1 REMARK 620 4 HOH B1250 O 92.1 84.0 173.8 REMARK 620 5 HOH B1291 O 174.5 87.3 95.0 86.5 REMARK 620 6 HOH E 64 O 90.9 172.5 85.1 88.8 94.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1222 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1470 O REMARK 620 2 HOH E1148 O 73.1 REMARK 620 3 HOH E1150 O 99.8 85.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 21 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 553 O REMARK 620 2 HOH D 765 O 86.5 REMARK 620 3 HOH D 766 O 85.6 162.8 REMARK 620 4 HOH D 767 O 94.6 101.1 94.7 REMARK 620 5 HOH D 768 O 93.2 77.7 87.5 172.0 REMARK 620 6 HOH E1224 O 149.7 63.3 122.8 93.4 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH F 763 O REMARK 620 2 HOH F 764 O 78.6 REMARK 620 3 HOH F 866 O 86.2 164.6 REMARK 620 4 HOH F1123 O 75.8 91.0 87.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EVP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EVP D 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QXK RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF DNA USED IN THE EXPERIMENT WAS 5'- REMARK 999 AGCCGAGCTGCAGCTCGGCT-3'. AND THE DNAS WERE CLEAVED INTO TWO PIECES REMARK 999 (TOTALLY 4 STRANDS, DESIGNATED AS CHAIN C, D, E AND F) DURING REMARK 999 EXPERIMENT. DBREF 3QX3 A 445 1201 UNP Q02880 TOP2B_HUMAN 450 1206 DBREF 3QX3 B 445 1201 UNP Q02880 TOP2B_HUMAN 450 1206 DBREF 3QX3 C 1 8 PDB 3QX3 3QX3 1 8 DBREF 3QX3 E 1 8 PDB 3QX3 3QX3 1 8 DBREF 3QX3 D 9 20 PDB 3QX3 3QX3 9 20 DBREF 3QX3 F 9 20 PDB 3QX3 3QX3 9 20 SEQADV 3QX3 MET A 419 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ALA A 420 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER A 421 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 TRP A 422 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER A 423 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 424 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PRO A 425 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLN A 426 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PHE A 427 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLU A 428 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 LYS A 429 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLY A 430 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ALA A 431 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP A 432 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP A 433 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP A 434 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP A 435 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 LYS A 436 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 VAL A 437 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PRO A 438 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP A 439 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PRO A 440 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 THR A 441 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER A 442 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 VAL A 443 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP A 444 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLY A 1202 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ALA A 1203 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PRO A 1204 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLY A 1205 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PHE A 1206 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER A 1207 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER A 1208 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ILE A 1209 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER A 1210 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ALA A 1211 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1212 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1213 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1214 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1215 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1216 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1217 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1218 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1219 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1220 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS A 1221 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 MET B 419 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ALA B 420 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER B 421 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 TRP B 422 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER B 423 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 424 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PRO B 425 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLN B 426 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PHE B 427 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLU B 428 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 LYS B 429 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLY B 430 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ALA B 431 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP B 432 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP B 433 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP B 434 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP B 435 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 LYS B 436 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 VAL B 437 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PRO B 438 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP B 439 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PRO B 440 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 THR B 441 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER B 442 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 VAL B 443 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ASP B 444 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLY B 1202 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ALA B 1203 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PRO B 1204 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 GLY B 1205 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 PHE B 1206 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER B 1207 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER B 1208 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ILE B 1209 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 SER B 1210 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 ALA B 1211 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1212 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1213 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1214 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1215 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1216 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1217 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1218 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1219 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1220 UNP Q02880 EXPRESSION TAG SEQADV 3QX3 HIS B 1221 UNP Q02880 EXPRESSION TAG SEQRES 1 A 803 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 803 ASP ASP ASP ASP LYS VAL PRO ASP PRO THR SER VAL ASP SEQRES 3 A 803 SER VAL LYS TYR SER LYS ILE LYS GLY ILE PRO LYS LEU SEQRES 4 A 803 ASP ASP ALA ASN ASP ALA GLY GLY LYS HIS SER LEU GLU SEQRES 5 A 803 CYS THR LEU ILE LEU THR GLU GLY ASP SER ALA LYS SER SEQRES 6 A 803 LEU ALA VAL SER GLY LEU GLY VAL ILE GLY ARG ASP ARG SEQRES 7 A 803 TYR GLY VAL PHE PRO LEU ARG GLY LYS ILE LEU ASN VAL SEQRES 8 A 803 ARG GLU ALA SER HIS LYS GLN ILE MET GLU ASN ALA GLU SEQRES 9 A 803 ILE ASN ASN ILE ILE LYS ILE VAL GLY LEU GLN TYR LYS SEQRES 10 A 803 LYS SER TYR ASP ASP ALA GLU SER LEU LYS THR LEU ARG SEQRES 11 A 803 TYR GLY LYS ILE MET ILE MET THR ASP GLN ASP GLN ASP SEQRES 12 A 803 GLY SER HIS ILE LYS GLY LEU LEU ILE ASN PHE ILE HIS SEQRES 13 A 803 HIS ASN TRP PRO SER LEU LEU LYS HIS GLY PHE LEU GLU SEQRES 14 A 803 GLU PHE ILE THR PRO ILE VAL LYS ALA SER LYS ASN LYS SEQRES 15 A 803 GLN GLU LEU SER PHE TYR SER ILE PRO GLU PHE ASP GLU SEQRES 16 A 803 TRP LYS LYS HIS ILE GLU ASN GLN LYS ALA TRP LYS ILE SEQRES 17 A 803 LYS TYR TYR LYS GLY LEU GLY THR SER THR ALA LYS GLU SEQRES 18 A 803 ALA LYS GLU TYR PHE ALA ASP MET GLU ARG HIS ARG ILE SEQRES 19 A 803 LEU PHE ARG TYR ALA GLY PRO GLU ASP ASP ALA ALA ILE SEQRES 20 A 803 THR LEU ALA PHE SER LYS LYS LYS ILE ASP ASP ARG LYS SEQRES 21 A 803 GLU TRP LEU THR ASN PHE MET GLU ASP ARG ARG GLN ARG SEQRES 22 A 803 ARG LEU HIS GLY LEU PRO GLU GLN PHE LEU TYR GLY THR SEQRES 23 A 803 ALA THR LYS HIS LEU THR TYR ASN ASP PHE ILE ASN LYS SEQRES 24 A 803 GLU LEU ILE LEU PHE SER ASN SER ASP ASN GLU ARG SER SEQRES 25 A 803 ILE PRO SER LEU VAL ASP GLY PHE LYS PRO GLY GLN ARG SEQRES 26 A 803 LYS VAL LEU PHE THR CYS PHE LYS ARG ASN ASP LYS ARG SEQRES 27 A 803 GLU VAL LYS VAL ALA GLN LEU ALA GLY SER VAL ALA GLU SEQRES 28 A 803 MET SER ALA TYR HIS HIS GLY GLU GLN ALA LEU MET MET SEQRES 29 A 803 THR ILE VAL ASN LEU ALA GLN ASN PHE VAL GLY SER ASN SEQRES 30 A 803 ASN ILE ASN LEU LEU GLN PRO ILE GLY GLN PHE GLY THR SEQRES 31 A 803 ARG LEU HIS GLY GLY LYS ASP ALA ALA SER PRO ARG TYR SEQRES 32 A 803 ILE PHE THR MET LEU SER THR LEU ALA ARG LEU LEU PHE SEQRES 33 A 803 PRO ALA VAL ASP ASP ASN LEU LEU LYS PHE LEU TYR ASP SEQRES 34 A 803 ASP ASN GLN ARG VAL GLU PRO GLU TRP TYR ILE PRO ILE SEQRES 35 A 803 ILE PRO MET VAL LEU ILE ASN GLY ALA GLU GLY ILE GLY SEQRES 36 A 803 THR GLY TRP ALA CYS LYS LEU PRO ASN TYR ASP ALA ARG SEQRES 37 A 803 GLU ILE VAL ASN ASN VAL ARG ARG MET LEU ASP GLY LEU SEQRES 38 A 803 ASP PRO HIS PRO MET LEU PRO ASN TYR LYS ASN PHE LYS SEQRES 39 A 803 GLY THR ILE GLN GLU LEU GLY GLN ASN GLN TYR ALA VAL SEQRES 40 A 803 SER GLY GLU ILE PHE VAL VAL ASP ARG ASN THR VAL GLU SEQRES 41 A 803 ILE THR GLU LEU PRO VAL ARG THR TRP THR GLN VAL TYR SEQRES 42 A 803 LYS GLU GLN VAL LEU GLU PRO MET LEU ASN GLY THR ASP SEQRES 43 A 803 LYS THR PRO ALA LEU ILE SER ASP TYR LYS GLU TYR HIS SEQRES 44 A 803 THR ASP THR THR VAL LYS PHE VAL VAL LYS MET THR GLU SEQRES 45 A 803 GLU LYS LEU ALA GLN ALA GLU ALA ALA GLY LEU HIS LYS SEQRES 46 A 803 VAL PHE LYS LEU GLN THR THR LEU THR CYS ASN SER MET SEQRES 47 A 803 VAL LEU PHE ASP HIS MET GLY CYS LEU LYS LYS TYR GLU SEQRES 48 A 803 THR VAL GLN ASP ILE LEU LYS GLU PHE PHE ASP LEU ARG SEQRES 49 A 803 LEU SER TYR TYR GLY LEU ARG LYS GLU TRP LEU VAL GLY SEQRES 50 A 803 MET LEU GLY ALA GLU SER THR LYS LEU ASN ASN GLN ALA SEQRES 51 A 803 ARG PHE ILE LEU GLU LYS ILE GLN GLY LYS ILE THR ILE SEQRES 52 A 803 GLU ASN ARG SER LYS LYS ASP LEU ILE GLN MET LEU VAL SEQRES 53 A 803 GLN ARG GLY TYR GLU SER ASP PRO VAL LYS ALA TRP LYS SEQRES 54 A 803 GLU ALA GLN GLU LYS ALA ALA GLU GLU ASP GLU THR GLN SEQRES 55 A 803 ASN GLN HIS ASP ASP SER SER SER ASP SER GLY THR PRO SEQRES 56 A 803 SER GLY PRO ASP PHE ASN TYR ILE LEU ASN MET SER LEU SEQRES 57 A 803 TRP SER LEU THR LYS GLU LYS VAL GLU GLU LEU ILE LYS SEQRES 58 A 803 GLN ARG ASP ALA LYS GLY ARG GLU VAL ASN ASP LEU LYS SEQRES 59 A 803 ARG LYS SER PRO SER ASP LEU TRP LYS GLU ASP LEU ALA SEQRES 60 A 803 ALA PHE VAL GLU GLU LEU ASP LYS VAL GLU SER GLN GLU SEQRES 61 A 803 ARG GLU ASP GLY ALA PRO GLY PHE SER SER ILE SER ALA SEQRES 62 A 803 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 803 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 B 803 ASP ASP ASP ASP LYS VAL PRO ASP PRO THR SER VAL ASP SEQRES 3 B 803 SER VAL LYS TYR SER LYS ILE LYS GLY ILE PRO LYS LEU SEQRES 4 B 803 ASP ASP ALA ASN ASP ALA GLY GLY LYS HIS SER LEU GLU SEQRES 5 B 803 CYS THR LEU ILE LEU THR GLU GLY ASP SER ALA LYS SER SEQRES 6 B 803 LEU ALA VAL SER GLY LEU GLY VAL ILE GLY ARG ASP ARG SEQRES 7 B 803 TYR GLY VAL PHE PRO LEU ARG GLY LYS ILE LEU ASN VAL SEQRES 8 B 803 ARG GLU ALA SER HIS LYS GLN ILE MET GLU ASN ALA GLU SEQRES 9 B 803 ILE ASN ASN ILE ILE LYS ILE VAL GLY LEU GLN TYR LYS SEQRES 10 B 803 LYS SER TYR ASP ASP ALA GLU SER LEU LYS THR LEU ARG SEQRES 11 B 803 TYR GLY LYS ILE MET ILE MET THR ASP GLN ASP GLN ASP SEQRES 12 B 803 GLY SER HIS ILE LYS GLY LEU LEU ILE ASN PHE ILE HIS SEQRES 13 B 803 HIS ASN TRP PRO SER LEU LEU LYS HIS GLY PHE LEU GLU SEQRES 14 B 803 GLU PHE ILE THR PRO ILE VAL LYS ALA SER LYS ASN LYS SEQRES 15 B 803 GLN GLU LEU SER PHE TYR SER ILE PRO GLU PHE ASP GLU SEQRES 16 B 803 TRP LYS LYS HIS ILE GLU ASN GLN LYS ALA TRP LYS ILE SEQRES 17 B 803 LYS TYR TYR LYS GLY LEU GLY THR SER THR ALA LYS GLU SEQRES 18 B 803 ALA LYS GLU TYR PHE ALA ASP MET GLU ARG HIS ARG ILE SEQRES 19 B 803 LEU PHE ARG TYR ALA GLY PRO GLU ASP ASP ALA ALA ILE SEQRES 20 B 803 THR LEU ALA PHE SER LYS LYS LYS ILE ASP ASP ARG LYS SEQRES 21 B 803 GLU TRP LEU THR ASN PHE MET GLU ASP ARG ARG GLN ARG SEQRES 22 B 803 ARG LEU HIS GLY LEU PRO GLU GLN PHE LEU TYR GLY THR SEQRES 23 B 803 ALA THR LYS HIS LEU THR TYR ASN ASP PHE ILE ASN LYS SEQRES 24 B 803 GLU LEU ILE LEU PHE SER ASN SER ASP ASN GLU ARG SER SEQRES 25 B 803 ILE PRO SER LEU VAL ASP GLY PHE LYS PRO GLY GLN ARG SEQRES 26 B 803 LYS VAL LEU PHE THR CYS PHE LYS ARG ASN ASP LYS ARG SEQRES 27 B 803 GLU VAL LYS VAL ALA GLN LEU ALA GLY SER VAL ALA GLU SEQRES 28 B 803 MET SER ALA TYR HIS HIS GLY GLU GLN ALA LEU MET MET SEQRES 29 B 803 THR ILE VAL ASN LEU ALA GLN ASN PHE VAL GLY SER ASN SEQRES 30 B 803 ASN ILE ASN LEU LEU GLN PRO ILE GLY GLN PHE GLY THR SEQRES 31 B 803 ARG LEU HIS GLY GLY LYS ASP ALA ALA SER PRO ARG TYR SEQRES 32 B 803 ILE PHE THR MET LEU SER THR LEU ALA ARG LEU LEU PHE SEQRES 33 B 803 PRO ALA VAL ASP ASP ASN LEU LEU LYS PHE LEU TYR ASP SEQRES 34 B 803 ASP ASN GLN ARG VAL GLU PRO GLU TRP TYR ILE PRO ILE SEQRES 35 B 803 ILE PRO MET VAL LEU ILE ASN GLY ALA GLU GLY ILE GLY SEQRES 36 B 803 THR GLY TRP ALA CYS LYS LEU PRO ASN TYR ASP ALA ARG SEQRES 37 B 803 GLU ILE VAL ASN ASN VAL ARG ARG MET LEU ASP GLY LEU SEQRES 38 B 803 ASP PRO HIS PRO MET LEU PRO ASN TYR LYS ASN PHE LYS SEQRES 39 B 803 GLY THR ILE GLN GLU LEU GLY GLN ASN GLN TYR ALA VAL SEQRES 40 B 803 SER GLY GLU ILE PHE VAL VAL ASP ARG ASN THR VAL GLU SEQRES 41 B 803 ILE THR GLU LEU PRO VAL ARG THR TRP THR GLN VAL TYR SEQRES 42 B 803 LYS GLU GLN VAL LEU GLU PRO MET LEU ASN GLY THR ASP SEQRES 43 B 803 LYS THR PRO ALA LEU ILE SER ASP TYR LYS GLU TYR HIS SEQRES 44 B 803 THR ASP THR THR VAL LYS PHE VAL VAL LYS MET THR GLU SEQRES 45 B 803 GLU LYS LEU ALA GLN ALA GLU ALA ALA GLY LEU HIS LYS SEQRES 46 B 803 VAL PHE LYS LEU GLN THR THR LEU THR CYS ASN SER MET SEQRES 47 B 803 VAL LEU PHE ASP HIS MET GLY CYS LEU LYS LYS TYR GLU SEQRES 48 B 803 THR VAL GLN ASP ILE LEU LYS GLU PHE PHE ASP LEU ARG SEQRES 49 B 803 LEU SER TYR TYR GLY LEU ARG LYS GLU TRP LEU VAL GLY SEQRES 50 B 803 MET LEU GLY ALA GLU SER THR LYS LEU ASN ASN GLN ALA SEQRES 51 B 803 ARG PHE ILE LEU GLU LYS ILE GLN GLY LYS ILE THR ILE SEQRES 52 B 803 GLU ASN ARG SER LYS LYS ASP LEU ILE GLN MET LEU VAL SEQRES 53 B 803 GLN ARG GLY TYR GLU SER ASP PRO VAL LYS ALA TRP LYS SEQRES 54 B 803 GLU ALA GLN GLU LYS ALA ALA GLU GLU ASP GLU THR GLN SEQRES 55 B 803 ASN GLN HIS ASP ASP SER SER SER ASP SER GLY THR PRO SEQRES 56 B 803 SER GLY PRO ASP PHE ASN TYR ILE LEU ASN MET SER LEU SEQRES 57 B 803 TRP SER LEU THR LYS GLU LYS VAL GLU GLU LEU ILE LYS SEQRES 58 B 803 GLN ARG ASP ALA LYS GLY ARG GLU VAL ASN ASP LEU LYS SEQRES 59 B 803 ARG LYS SER PRO SER ASP LEU TRP LYS GLU ASP LEU ALA SEQRES 60 B 803 ALA PHE VAL GLU GLU LEU ASP LYS VAL GLU SER GLN GLU SEQRES 61 B 803 ARG GLU ASP GLY ALA PRO GLY PHE SER SER ILE SER ALA SEQRES 62 B 803 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 8 DA DG DC DC DG DA DG DC SEQRES 1 D 12 DT DG DC DA DG DC DT DC DG DG DC DT SEQRES 1 E 8 DA DG DC DC DG DA DG DC SEQRES 1 F 12 DT DG DC DA DG DC DT DC DG DG DC DT HET EVP A 1 42 HET MG A1222 1 HET MG A1223 1 HET MG B 1 1 HET MG B1222 1 HET EVP D 1 42 HET MG D 21 1 HET MG F 1 1 HETNAM EVP (5S,5AR,8AR,9R)-9-(4-HYDROXY-3,5-DIMETHOXYPHENYL)-8- HETNAM 2 EVP OXO-5,5A,6,8,8A,9-HEXAHYDROFURO[3',4':6,7]NAPHTHO[2,3- HETNAM 3 EVP D][1,3]DIOXOL -5-YL 4,6-O-[(1R)-ETHYLIDENE]-BETA-D- HETNAM 4 EVP GLUCOPYRANOSIDE HETNAM MG MAGNESIUM ION HETSYN EVP ETOPOSIDE; VP-16 FORMUL 7 EVP 2(C29 H32 O13) FORMUL 8 MG 6(MG 2+) FORMUL 15 HOH *1047(H2 O) HELIX 1 1 HIS A 467 GLU A 470 5 4 HELIX 2 2 GLY A 478 SER A 487 1 10 HELIX 3 3 VAL A 491 ASP A 495 5 5 HELIX 4 4 SER A 513 ASN A 520 1 8 HELIX 5 5 ASN A 520 GLY A 531 1 12 HELIX 6 6 GLU A 542 LEU A 547 5 6 HELIX 7 7 ASP A 559 TRP A 577 1 19 HELIX 8 8 PRO A 578 HIS A 583 5 6 HELIX 9 9 LYS A 638 ASP A 646 1 9 HELIX 10 10 ASP A 646 HIS A 650 1 5 HELIX 11 11 GLY A 658 SER A 670 1 13 HELIX 12 12 LYS A 673 HIS A 694 1 22 HELIX 13 13 TYR A 711 GLU A 718 1 8 HELIX 14 14 GLU A 718 ILE A 731 1 14 HELIX 15 15 LYS A 739 ASN A 753 1 15 HELIX 16 16 VAL A 760 ALA A 772 1 13 HELIX 17 17 GLY A 776 GLN A 789 1 14 HELIX 18 18 LEU A 829 PHE A 834 1 6 HELIX 19 19 PRO A 835 ASN A 840 1 6 HELIX 20 20 PRO A 862 ASN A 867 1 6 HELIX 21 21 ASP A 884 ASP A 897 1 14 HELIX 22 22 TRP A 947 VAL A 955 1 9 HELIX 23 23 VAL A 955 GLY A 962 1 8 HELIX 24 24 THR A 989 GLY A 1000 1 12 HELIX 25 25 GLY A 1000 PHE A 1005 1 6 HELIX 26 26 THR A 1030 GLN A 1076 1 47 HELIX 27 27 SER A 1085 ARG A 1096 1 12 HELIX 28 28 ASP A 1101 GLN A 1110 1 10 HELIX 29 29 PHE A 1138 ASN A 1143 1 6 HELIX 30 30 SER A 1145 LEU A 1149 5 5 HELIX 31 31 THR A 1150 ARG A 1173 1 24 HELIX 32 32 SER A 1175 ASP A 1201 1 27 HELIX 33 33 HIS B 467 GLU B 470 5 4 HELIX 34 34 GLY B 478 ARG B 494 1 17 HELIX 35 35 SER B 513 GLU B 519 1 7 HELIX 36 36 ASN B 520 GLY B 531 1 12 HELIX 37 37 GLU B 542 LEU B 547 5 6 HELIX 38 38 ASP B 559 TRP B 577 1 19 HELIX 39 39 TRP B 577 HIS B 583 1 7 HELIX 40 40 ALA B 637 ASP B 646 1 10 HELIX 41 41 ASP B 646 HIS B 650 1 5 HELIX 42 42 GLY B 658 SER B 670 1 13 HELIX 43 43 LYS B 673 HIS B 694 1 22 HELIX 44 44 TYR B 711 GLU B 718 1 8 HELIX 45 45 GLU B 718 ILE B 731 1 14 HELIX 46 46 LYS B 739 ASN B 753 1 15 HELIX 47 47 VAL B 760 ALA B 772 1 13 HELIX 48 48 GLY B 776 GLN B 789 1 14 HELIX 49 49 LEU B 829 PHE B 834 1 6 HELIX 50 50 PRO B 835 LEU B 842 5 8 HELIX 51 51 PRO B 862 ASN B 867 1 6 HELIX 52 52 ASP B 884 ASP B 897 1 14 HELIX 53 53 TRP B 947 VAL B 955 1 9 HELIX 54 54 VAL B 955 ASN B 961 1 7 HELIX 55 55 THR B 989 ALA B 999 1 11 HELIX 56 56 GLY B 1000 PHE B 1005 1 6 HELIX 57 57 THR B 1030 GLN B 1076 1 47 HELIX 58 58 SER B 1085 ARG B 1096 1 12 HELIX 59 59 ASP B 1101 GLN B 1110 1 10 HELIX 60 60 PHE B 1138 ASN B 1143 1 6 HELIX 61 61 SER B 1145 LEU B 1149 5 5 HELIX 62 62 THR B 1150 LYS B 1174 1 25 HELIX 63 63 SER B 1175 ASP B 1201 1 27 SHEET 1 A 6 TYR A 497 LEU A 502 0 SHEET 2 A 6 THR A 472 GLU A 477 1 N THR A 476 O LEU A 502 SHEET 3 A 6 LYS A 551 MET A 555 1 O MET A 553 N LEU A 473 SHEET 4 A 6 LEU A 586 PHE A 589 1 O GLU A 587 N ILE A 554 SHEET 5 A 6 ARG A 651 ARG A 655 -1 O ILE A 652 N GLU A 588 SHEET 6 A 6 HIS A 708 THR A 710 1 O LEU A 709 N ARG A 655 SHEET 1 B 2 VAL A 758 LYS A 759 0 SHEET 2 B 2 PHE A 823 THR A 824 -1 O THR A 824 N VAL A 758 SHEET 1 C 2 PHE A 844 ASP A 847 0 SHEET 2 C 2 GLN A 850 PRO A 854 -1 O VAL A 852 N LEU A 845 SHEET 1 D 2 GLU A 870 ILE A 872 0 SHEET 2 D 2 ALA A 877 LYS A 879 -1 O CYS A 878 N GLY A 871 SHEET 1 E 3 THR A 914 GLY A 919 0 SHEET 2 E 3 GLN A 922 SER A 926 -1 O GLN A 922 N LEU A 918 SHEET 3 E 3 GLN A1008 THR A1012 -1 O LEU A1011 N TYR A 923 SHEET 1 F 4 GLU A 928 ASP A 933 0 SHEET 2 F 4 THR A 936 GLU A 941 -1 O GLU A 938 N PHE A 930 SHEET 3 F 4 PHE A 984 LYS A 987 -1 O VAL A 986 N VAL A 937 SHEET 4 F 4 ASP A 972 GLU A 975 -1 N ASP A 972 O LYS A 987 SHEET 1 G 2 MET A1016 PHE A1019 0 SHEET 2 G 2 LEU A1025 TYR A1028 -1 O TYR A1028 N MET A1016 SHEET 1 H 6 TYR B 497 LEU B 502 0 SHEET 2 H 6 THR B 472 GLU B 477 1 N THR B 476 O LEU B 502 SHEET 3 H 6 LYS B 551 MET B 555 1 O MET B 555 N LEU B 475 SHEET 4 H 6 LEU B 586 PHE B 589 1 O GLU B 587 N ILE B 554 SHEET 5 H 6 ARG B 651 ARG B 655 -1 O ILE B 652 N GLU B 588 SHEET 6 H 6 HIS B 708 THR B 710 1 O LEU B 709 N LEU B 653 SHEET 1 I 2 VAL B 758 LYS B 759 0 SHEET 2 I 2 PHE B 823 THR B 824 -1 O THR B 824 N VAL B 758 SHEET 1 J 2 PHE B 844 ASP B 847 0 SHEET 2 J 2 GLN B 850 PRO B 854 -1 O VAL B 852 N LEU B 845 SHEET 1 K 2 GLU B 870 ILE B 872 0 SHEET 2 K 2 ALA B 877 LYS B 879 -1 O CYS B 878 N GLY B 871 SHEET 1 L 3 THR B 914 GLY B 919 0 SHEET 2 L 3 GLN B 922 SER B 926 -1 O SER B 926 N THR B 914 SHEET 3 L 3 GLN B1008 THR B1012 -1 O THR B1009 N VAL B 925 SHEET 1 M 4 GLU B 928 ASP B 933 0 SHEET 2 M 4 THR B 936 GLU B 941 -1 O GLU B 938 N PHE B 930 SHEET 3 M 4 PHE B 984 LYS B 987 -1 O VAL B 986 N VAL B 937 SHEET 4 M 4 ASP B 972 GLU B 975 -1 N ASP B 972 O LYS B 987 SHEET 1 N 2 MET B1016 PHE B1019 0 SHEET 2 N 2 LEU B1025 TYR B1028 -1 O TYR B1028 N MET B1016 LINK OH TYR A 821 P DT F 9 1555 1555 1.62 LINK OH TYR B 821 P DT D 9 1555 1555 1.62 LINK OD2 ASP A 557 MG MG A1222 1555 1555 2.30 LINK OD2 ASP A 559 MG MG A1222 1555 1555 2.24 LINK MG MG A1222 O HOH A1333 1555 1555 2.22 LINK MG MG A1222 O HOH A1348 1555 1555 2.34 LINK MG MG A1222 O HOH C 633 1555 1555 2.37 LINK MG MG A1222 O HOH C 795 1555 1555 2.32 LINK MG MG A1223 O HOH A1466 1555 1555 2.51 LINK MG MG A1223 O HOH A1467 1555 1555 2.20 LINK MG MG A1223 O HOH C1143 1555 1555 2.07 LINK MG MG A1223 O HOH C1145 1555 1555 2.21 LINK MG MG B 1 O HOH B 46 1555 1555 2.24 LINK MG MG B 1 OD2 ASP B 557 1555 1555 2.31 LINK MG MG B 1 OD2 ASP B 559 1555 1555 2.12 LINK MG MG B 1 O HOH B1250 1555 1555 2.29 LINK MG MG B 1 O HOH B1291 1555 1555 2.34 LINK MG MG B 1 O HOH E 64 1555 1555 2.38 LINK MG MG B1222 O HOH B1470 1555 1555 1.91 LINK MG MG B1222 O HOH E1148 1555 1555 2.21 LINK MG MG B1222 O HOH E1150 1555 1555 2.02 LINK MG MG D 21 O HOH D 553 1555 1555 2.11 LINK MG MG D 21 O HOH D 765 1555 1555 2.36 LINK MG MG D 21 O HOH D 766 1555 1555 2.37 LINK MG MG D 21 O HOH D 767 1555 1555 2.39 LINK MG MG D 21 O HOH D 768 1555 1555 2.20 LINK MG MG D 21 O HOH E1224 1555 1555 2.45 LINK MG MG F 1 O HOH F 763 1555 1555 2.20 LINK MG MG F 1 O HOH F 764 1555 1555 2.31 LINK MG MG F 1 O HOH F 866 1555 1555 2.37 LINK MG MG F 1 O HOH F1123 1555 1555 2.00 SITE 1 AC1 10 GLY A 478 ASP A 479 ARG A 503 GLN A 778 SITE 2 AC1 10 MET A 782 DC C 8 DT D 9 DG D 10 SITE 3 AC1 10 DA F 12 DG F 13 SITE 1 AC2 2 ASP A 557 ASP A 559 SITE 1 AC3 3 ASN A 867 GLY A 868 GLU A 870 SITE 1 AC4 2 ASP B 557 ASP B 559 SITE 1 AC5 1 ASN B 867 SITE 1 AC6 9 GLY B 478 ASP B 479 ARG B 503 MET B 782 SITE 2 AC6 9 DA D 12 DG D 13 DC E 8 DT F 9 SITE 3 AC6 9 DG F 10 CRYST1 80.149 176.801 94.067 90.00 111.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012477 0.000000 0.004935 0.00000 SCALE2 0.000000 0.005656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011432 0.00000