HEADER LYASE 01-MAR-11 3QXI TITLE CRYSTAL STRUCTURE OF ENOYL-COA HYDRATASE ECHA1 FROM MYCOBACTERIUM TITLE 2 MARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE ECHA1; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 4.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: ATCC BAA-535 / M; SOURCE 5 GENE: ECHA1, MMAR_0465; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, MYCOBACTERIUM, TUBERCULOSIS, MARINUM, KEYWDS 3 WATER-BORNE PATHOGEN, FATTY ACID SYNTHESIS, ENOYL-COA, COENZYME A, KEYWDS 4 HYDRATASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3QXI 1 SEQADV REVDAT 2 22-APR-15 3QXI 1 JRNL VERSN REVDAT 1 16-MAR-11 3QXI 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 34879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1735 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5332 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.838 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5420 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7383 ; 1.441 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 5.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;30.330 ;23.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 817 ;13.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;20.629 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 886 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4093 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3704 ; 0.652 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5838 ; 1.181 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1716 ; 2.072 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1544 ; 3.505 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6510 14.7197 22.6143 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.1317 REMARK 3 T33: 0.0075 T12: -0.0227 REMARK 3 T13: -0.0106 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.5315 L22: 0.8079 REMARK 3 L33: 1.0424 L12: -0.0742 REMARK 3 L13: -0.3481 L23: 0.1255 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.1601 S13: -0.0191 REMARK 3 S21: 0.0041 S22: -0.0067 S23: 0.0126 REMARK 3 S31: -0.0135 S32: 0.3230 S33: -0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1037 -7.5077 15.9582 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.0110 REMARK 3 T33: 0.0433 T12: -0.0202 REMARK 3 T13: 0.0550 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.7533 L22: 0.5014 REMARK 3 L33: 0.6765 L12: -0.2497 REMARK 3 L13: -0.0209 L23: 0.0726 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: 0.0675 S13: -0.0565 REMARK 3 S21: 0.0868 S22: -0.0353 S23: 0.1114 REMARK 3 S31: 0.1695 S32: 0.0012 S33: 0.1101 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 260 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6770 23.7545 13.7237 REMARK 3 T TENSOR REMARK 3 T11: 0.0393 T22: 0.0463 REMARK 3 T33: 0.0401 T12: 0.0184 REMARK 3 T13: -0.0078 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.5599 L22: 0.5288 REMARK 3 L33: 0.5717 L12: 0.1693 REMARK 3 L13: 0.0334 L23: 0.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: 0.0306 S13: 0.0726 REMARK 3 S21: 0.0139 S22: 0.0215 S23: 0.0365 REMARK 3 S31: -0.0820 S32: -0.0639 S33: 0.0181 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34932 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 2IEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYMAA.01530.F.A1 PS00846 AT 33.15 REMARK 280 MG/ML AGAINST JCSG+ A5, 0.2 M MAGNESIUM FORMATE, 25% PEG 3350 REMARK 280 WITH 25% ETHYLENE GLYCOL AS CRYO-PROTECTANT, CRYSTAL TRACKING ID REMARK 280 218651A5, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.39000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.39000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 GLU A 9 REMARK 465 LEU A 73 REMARK 465 LYS A 74 REMARK 465 ALA A 75 REMARK 465 PHE A 76 REMARK 465 ALA A 77 REMARK 465 ARG A 78 REMARK 465 GLY A 79 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 ASP B 7 REMARK 465 THR B 8 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 MET C 0 REMARK 465 VAL C 1 REMARK 465 SER C 2 REMARK 465 GLU C 3 REMARK 465 LEU C 4 REMARK 465 ASN C 5 REMARK 465 GLY C 6 REMARK 465 ASP C 7 REMARK 465 THR C 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 MET A 71 CG SD CE REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ASN A 81 CG OD1 ND2 REMARK 470 VAL A 83 CG1 CG2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 9 CG CD OE1 OE2 REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 ARG C 40 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 ASN C 81 CG OD1 ND2 REMARK 470 ARG C 94 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 243 CG CD CE NZ REMARK 470 LYS C 252 CG CD CE NZ REMARK 470 ARG C 256 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 126 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG C 126 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 -115.94 52.76 REMARK 500 VAL A 83 73.13 -102.51 REMARK 500 PHE A 91 10.33 -150.81 REMARK 500 ALA A 110 -119.02 62.56 REMARK 500 LYS A 252 27.86 49.82 REMARK 500 ASP B 18 -117.79 67.32 REMARK 500 CYS B 68 122.18 -175.97 REMARK 500 ASP B 72 96.42 -69.35 REMARK 500 GLU B 80 152.03 -49.44 REMARK 500 PHE B 91 10.84 -154.21 REMARK 500 ALA B 110 -127.76 63.07 REMARK 500 ASP C 18 -108.53 65.18 REMARK 500 CYS C 68 125.00 -178.59 REMARK 500 PHE C 91 7.87 -161.89 REMARK 500 ALA C 110 -122.95 54.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYMAA.01530.F RELATED DB: TARGETDB DBREF 3QXI A 2 260 UNP B2HMZ1 B2HMZ1_MYCMM 2 260 DBREF 3QXI B 2 260 UNP B2HMZ1 B2HMZ1_MYCMM 2 260 DBREF 3QXI C 2 260 UNP B2HMZ1 B2HMZ1_MYCMM 2 260 SEQADV 3QXI GLY A -4 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI PRO A -3 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI GLY A -2 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI SER A -1 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI MET A 0 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI VAL A 1 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI GLY B -4 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI PRO B -3 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI GLY B -2 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI SER B -1 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI MET B 0 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI VAL B 1 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI GLY C -4 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI PRO C -3 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI GLY C -2 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI SER C -1 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI MET C 0 UNP B2HMZ1 EXPRESSION TAG SEQADV 3QXI VAL C 1 UNP B2HMZ1 EXPRESSION TAG SEQRES 1 A 265 GLY PRO GLY SER MET VAL SER GLU LEU ASN GLY ASP THR SEQRES 2 A 265 GLU PRO GLU VAL LEU VAL GLU GLN ARG ASP ARG ILE LEU SEQRES 3 A 265 ILE ILE THR ILE ASN ARG PRO LYS ALA LYS ASN SER VAL SEQRES 4 A 265 ASN ALA ALA VAL SER ARG ALA LEU ALA ASP ALA MET ASP SEQRES 5 A 265 ARG LEU ASP ALA ASP ALA GLY LEU SER VAL GLY ILE LEU SEQRES 6 A 265 THR GLY ALA GLY GLY SER PHE CYS ALA GLY MET ASP LEU SEQRES 7 A 265 LYS ALA PHE ALA ARG GLY GLU ASN VAL VAL VAL GLU GLY SEQRES 8 A 265 ARG GLY LEU GLY PHE THR GLU ARG PRO PRO ALA LYS PRO SEQRES 9 A 265 LEU ILE ALA ALA VAL GLU GLY TYR ALA LEU ALA GLY GLY SEQRES 10 A 265 THR GLU LEU ALA LEU ALA THR ASP LEU ILE VAL ALA ALA SEQRES 11 A 265 ARG ASP SER ALA PHE GLY ILE PRO GLU VAL LYS ARG GLY SEQRES 12 A 265 LEU VAL ALA GLY GLY GLY GLY LEU LEU ARG LEU PRO GLU SEQRES 13 A 265 ARG ILE PRO TYR ALA ILE ALA MET GLU LEU ALA LEU THR SEQRES 14 A 265 GLY ASP ASN LEU SER ALA GLU ARG ALA HIS ALA LEU GLY SEQRES 15 A 265 MET VAL ASN VAL LEU ALA GLU PRO GLY ALA ALA LEU ASP SEQRES 16 A 265 ALA ALA ILE ALA LEU ALA GLU LYS ILE THR ALA ASN GLY SEQRES 17 A 265 PRO LEU ALA VAL ALA ALA THR LYS ARG ILE ILE THR GLU SEQRES 18 A 265 SER ARG GLY TRP SER LEU ASP THR ARG PHE ALA GLN GLN SEQRES 19 A 265 MET LYS ILE LEU PHE PRO ILE PHE THR SER ASN ASP ALA SEQRES 20 A 265 LYS GLU GLY ALA ILE ALA PHE ALA GLU LYS ARG PRO PRO SEQRES 21 A 265 ARG TRP THR GLY THR SEQRES 1 B 265 GLY PRO GLY SER MET VAL SER GLU LEU ASN GLY ASP THR SEQRES 2 B 265 GLU PRO GLU VAL LEU VAL GLU GLN ARG ASP ARG ILE LEU SEQRES 3 B 265 ILE ILE THR ILE ASN ARG PRO LYS ALA LYS ASN SER VAL SEQRES 4 B 265 ASN ALA ALA VAL SER ARG ALA LEU ALA ASP ALA MET ASP SEQRES 5 B 265 ARG LEU ASP ALA ASP ALA GLY LEU SER VAL GLY ILE LEU SEQRES 6 B 265 THR GLY ALA GLY GLY SER PHE CYS ALA GLY MET ASP LEU SEQRES 7 B 265 LYS ALA PHE ALA ARG GLY GLU ASN VAL VAL VAL GLU GLY SEQRES 8 B 265 ARG GLY LEU GLY PHE THR GLU ARG PRO PRO ALA LYS PRO SEQRES 9 B 265 LEU ILE ALA ALA VAL GLU GLY TYR ALA LEU ALA GLY GLY SEQRES 10 B 265 THR GLU LEU ALA LEU ALA THR ASP LEU ILE VAL ALA ALA SEQRES 11 B 265 ARG ASP SER ALA PHE GLY ILE PRO GLU VAL LYS ARG GLY SEQRES 12 B 265 LEU VAL ALA GLY GLY GLY GLY LEU LEU ARG LEU PRO GLU SEQRES 13 B 265 ARG ILE PRO TYR ALA ILE ALA MET GLU LEU ALA LEU THR SEQRES 14 B 265 GLY ASP ASN LEU SER ALA GLU ARG ALA HIS ALA LEU GLY SEQRES 15 B 265 MET VAL ASN VAL LEU ALA GLU PRO GLY ALA ALA LEU ASP SEQRES 16 B 265 ALA ALA ILE ALA LEU ALA GLU LYS ILE THR ALA ASN GLY SEQRES 17 B 265 PRO LEU ALA VAL ALA ALA THR LYS ARG ILE ILE THR GLU SEQRES 18 B 265 SER ARG GLY TRP SER LEU ASP THR ARG PHE ALA GLN GLN SEQRES 19 B 265 MET LYS ILE LEU PHE PRO ILE PHE THR SER ASN ASP ALA SEQRES 20 B 265 LYS GLU GLY ALA ILE ALA PHE ALA GLU LYS ARG PRO PRO SEQRES 21 B 265 ARG TRP THR GLY THR SEQRES 1 C 265 GLY PRO GLY SER MET VAL SER GLU LEU ASN GLY ASP THR SEQRES 2 C 265 GLU PRO GLU VAL LEU VAL GLU GLN ARG ASP ARG ILE LEU SEQRES 3 C 265 ILE ILE THR ILE ASN ARG PRO LYS ALA LYS ASN SER VAL SEQRES 4 C 265 ASN ALA ALA VAL SER ARG ALA LEU ALA ASP ALA MET ASP SEQRES 5 C 265 ARG LEU ASP ALA ASP ALA GLY LEU SER VAL GLY ILE LEU SEQRES 6 C 265 THR GLY ALA GLY GLY SER PHE CYS ALA GLY MET ASP LEU SEQRES 7 C 265 LYS ALA PHE ALA ARG GLY GLU ASN VAL VAL VAL GLU GLY SEQRES 8 C 265 ARG GLY LEU GLY PHE THR GLU ARG PRO PRO ALA LYS PRO SEQRES 9 C 265 LEU ILE ALA ALA VAL GLU GLY TYR ALA LEU ALA GLY GLY SEQRES 10 C 265 THR GLU LEU ALA LEU ALA THR ASP LEU ILE VAL ALA ALA SEQRES 11 C 265 ARG ASP SER ALA PHE GLY ILE PRO GLU VAL LYS ARG GLY SEQRES 12 C 265 LEU VAL ALA GLY GLY GLY GLY LEU LEU ARG LEU PRO GLU SEQRES 13 C 265 ARG ILE PRO TYR ALA ILE ALA MET GLU LEU ALA LEU THR SEQRES 14 C 265 GLY ASP ASN LEU SER ALA GLU ARG ALA HIS ALA LEU GLY SEQRES 15 C 265 MET VAL ASN VAL LEU ALA GLU PRO GLY ALA ALA LEU ASP SEQRES 16 C 265 ALA ALA ILE ALA LEU ALA GLU LYS ILE THR ALA ASN GLY SEQRES 17 C 265 PRO LEU ALA VAL ALA ALA THR LYS ARG ILE ILE THR GLU SEQRES 18 C 265 SER ARG GLY TRP SER LEU ASP THR ARG PHE ALA GLN GLN SEQRES 19 C 265 MET LYS ILE LEU PHE PRO ILE PHE THR SER ASN ASP ALA SEQRES 20 C 265 LYS GLU GLY ALA ILE ALA PHE ALA GLU LYS ARG PRO PRO SEQRES 21 C 265 ARG TRP THR GLY THR FORMUL 4 HOH *398(H2 O) HELIX 1 1 ARG A 27 LYS A 31 5 5 HELIX 2 2 ASN A 35 ASP A 52 1 18 HELIX 3 3 ALA A 110 THR A 119 1 10 HELIX 4 4 ILE A 132 GLY A 138 5 7 HELIX 5 5 GLY A 144 ILE A 153 1 10 HELIX 6 6 PRO A 154 GLY A 165 1 12 HELIX 7 7 ALA A 170 LEU A 176 1 7 HELIX 8 8 ALA A 187 ALA A 201 1 15 HELIX 9 9 GLY A 203 ARG A 218 1 16 HELIX 10 10 THR A 224 SER A 239 1 16 HELIX 11 11 SER A 239 GLU A 251 1 13 HELIX 12 12 ARG B 27 LYS B 31 5 5 HELIX 13 13 ASN B 35 ASP B 52 1 18 HELIX 14 14 ASP B 72 GLY B 79 1 8 HELIX 15 15 ALA B 110 THR B 119 1 10 HELIX 16 16 PRO B 133 GLY B 138 5 6 HELIX 17 17 GLY B 144 ILE B 153 1 10 HELIX 18 18 PRO B 154 GLY B 165 1 12 HELIX 19 19 ALA B 170 LEU B 176 1 7 HELIX 20 20 ALA B 187 ALA B 201 1 15 HELIX 21 21 GLY B 203 SER B 217 1 15 HELIX 22 22 ARG B 218 TRP B 220 5 3 HELIX 23 23 THR B 224 SER B 239 1 16 HELIX 24 24 SER B 239 GLU B 251 1 13 HELIX 25 25 ARG C 27 LYS C 31 5 5 HELIX 26 26 ASN C 35 ASP C 52 1 18 HELIX 27 27 ASP C 72 ARG C 78 1 7 HELIX 28 28 ALA C 110 THR C 119 1 10 HELIX 29 29 PRO C 133 GLY C 138 5 6 HELIX 30 30 GLY C 144 ILE C 153 1 10 HELIX 31 31 PRO C 154 GLY C 165 1 12 HELIX 32 32 ALA C 170 LEU C 176 1 7 HELIX 33 33 ALA C 187 ALA C 201 1 15 HELIX 34 34 GLY C 203 ARG C 218 1 16 HELIX 35 35 THR C 224 PHE C 234 1 11 HELIX 36 36 PRO C 235 PHE C 237 5 3 HELIX 37 37 SER C 239 GLU C 251 1 13 SHEET 1 A 6 VAL A 12 ARG A 17 0 SHEET 2 A 6 ILE A 20 ILE A 25 -1 O THR A 24 N LEU A 13 SHEET 3 A 6 VAL A 57 GLY A 62 1 O ILE A 59 N LEU A 21 SHEET 4 A 6 LEU A 100 VAL A 104 1 O ALA A 103 N LEU A 60 SHEET 5 A 6 LEU A 121 ALA A 125 1 O VAL A 123 N VAL A 104 SHEET 6 A 6 VAL A 181 ALA A 183 1 O VAL A 181 N ALA A 124 SHEET 1 B 2 VAL A 83 VAL A 84 0 SHEET 2 B 2 GLY A 88 LEU A 89 -1 O GLY A 88 N VAL A 84 SHEET 1 C 3 TYR A 107 LEU A 109 0 SHEET 2 C 3 ALA A 129 GLY A 131 1 O ALA A 129 N ALA A 108 SHEET 3 C 3 LEU A 168 SER A 169 -1 O LEU A 168 N PHE A 130 SHEET 1 D 6 VAL B 12 ARG B 17 0 SHEET 2 D 6 ILE B 20 ILE B 25 -1 O ILE B 22 N GLU B 15 SHEET 3 D 6 VAL B 57 GLY B 62 1 O ILE B 59 N ILE B 23 SHEET 4 D 6 LEU B 100 VAL B 104 1 O ILE B 101 N LEU B 60 SHEET 5 D 6 LEU B 121 ALA B 125 1 O VAL B 123 N VAL B 104 SHEET 6 D 6 VAL B 181 ALA B 183 1 O VAL B 181 N ALA B 124 SHEET 1 E 3 TYR B 107 LEU B 109 0 SHEET 2 E 3 ALA B 129 GLY B 131 1 O ALA B 129 N ALA B 108 SHEET 3 E 3 LEU B 168 SER B 169 -1 O LEU B 168 N PHE B 130 SHEET 1 F 6 VAL C 12 ARG C 17 0 SHEET 2 F 6 ILE C 20 ILE C 25 -1 O ILE C 22 N GLU C 15 SHEET 3 F 6 VAL C 57 GLY C 62 1 O THR C 61 N ILE C 23 SHEET 4 F 6 LEU C 100 VAL C 104 1 O ALA C 103 N LEU C 60 SHEET 5 F 6 LEU C 121 ALA C 125 1 O VAL C 123 N VAL C 104 SHEET 6 F 6 VAL C 181 ALA C 183 1 O ALA C 183 N ALA C 124 SHEET 1 G 3 TYR C 107 LEU C 109 0 SHEET 2 G 3 ALA C 129 GLY C 131 1 O ALA C 129 N ALA C 108 SHEET 3 G 3 ASN C 167 SER C 169 -1 O LEU C 168 N PHE C 130 CRYST1 126.780 77.710 76.470 90.00 107.94 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007888 0.000000 0.002553 0.00000 SCALE2 0.000000 0.012868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013745 0.00000