data_3QY0 # _entry.id 3QY0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QY0 pdb_00003qy0 10.2210/pdb3qy0/pdb RCSB RCSB064245 ? ? WWPDB D_1000064245 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB APC5858 . unspecified PDB 2QMO 'Crystal structure of dethiobiotin synthetase (bioD) from Helicobacter pylori' unspecified PDB 3MLE 'Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori cocrystallized with ATP' unspecified PDB 3QXC 'Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ATP' unspecified PDB 3QXH 'Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ADP and 8-aminocaprylic acid' unspecified PDB 3QXJ 'Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GTP' unspecified PDB 3QXS 'Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ANP' unspecified PDB 3QXX 'Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP and 8-aminocaprylic acid' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QY0 _pdbx_database_status.recvd_initial_deposition_date 2011-03-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Porebski, P.J.' 1 ? 'Klimecka, M.M.' 2 ? 'Chruszcz, M.' 3 ? 'Murzyn, K.' 4 ? 'Joachimiak, A.' 5 ? 'Minor, W.' 6 0000-0001-7075-7090 'Midwest Center for Structural Genomics (MCSG)' 7 ? # _citation.id primary _citation.title 'Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.' _citation.journal_abbrev 'Febs J.' _citation.journal_volume 279 _citation.page_first 1093 _citation.page_last 1105 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22284390 _citation.pdbx_database_id_DOI 10.1111/j.1742-4658.2012.08506.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Porebski, P.J.' 1 ? primary 'Klimecka, M.' 2 ? primary 'Chruszcz, M.' 3 ? primary 'Nicholls, R.A.' 4 ? primary 'Murzyn, K.' 5 ? primary 'Cuff, M.E.' 6 ? primary 'Xu, X.' 7 ? primary 'Cymborowski, M.' 8 ? primary 'Murshudov, G.N.' 9 ? primary 'Savchenko, A.' 10 ? primary 'Edwards, A.' 11 ? primary 'Minor, W.' 12 0000-0001-7075-7090 # _cell.entry_id 3QY0 _cell.length_a 81.718 _cell.length_b 37.342 _cell.length_c 69.125 _cell.angle_alpha 90.00 _cell.angle_beta 101.46 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QY0 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dethiobiotin synthetase' 27148.088 1 6.3.3.3 ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 16 ? ? ? ? 6 water nat water 18.015 209 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DTB synthetase, DTBS, Dethiobiotin synthase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDN RLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL KAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK GS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDN RLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL KAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK GS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC5858 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 ARG n 1 15 GLU n 1 16 ASN n 1 17 LEU n 1 18 TYR n 1 19 PHE n 1 20 GLN n 1 21 GLY n 1 22 HIS n 1 23 MET n 1 24 LEU n 1 25 PHE n 1 26 ILE n 1 27 SER n 1 28 ALA n 1 29 THR n 1 30 ASN n 1 31 THR n 1 32 ASN n 1 33 ALA n 1 34 GLY n 1 35 LYS n 1 36 THR n 1 37 THR n 1 38 CYS n 1 39 ALA n 1 40 ARG n 1 41 LEU n 1 42 LEU n 1 43 ALA n 1 44 GLN n 1 45 TYR n 1 46 CYS n 1 47 ASN n 1 48 ALA n 1 49 CYS n 1 50 GLY n 1 51 VAL n 1 52 LYS n 1 53 THR n 1 54 ILE n 1 55 LEU n 1 56 LEU n 1 57 LYS n 1 58 PRO n 1 59 ILE n 1 60 GLU n 1 61 THR n 1 62 GLY n 1 63 VAL n 1 64 ASN n 1 65 ASP n 1 66 ALA n 1 67 ILE n 1 68 ASN n 1 69 HIS n 1 70 SER n 1 71 SER n 1 72 ASP n 1 73 ALA n 1 74 HIS n 1 75 LEU n 1 76 PHE n 1 77 LEU n 1 78 GLN n 1 79 ASP n 1 80 ASN n 1 81 ARG n 1 82 LEU n 1 83 LEU n 1 84 ASP n 1 85 ARG n 1 86 SER n 1 87 LEU n 1 88 THR n 1 89 LEU n 1 90 LYS n 1 91 ASP n 1 92 ILE n 1 93 SER n 1 94 PHE n 1 95 TYR n 1 96 ARG n 1 97 TYR n 1 98 HIS n 1 99 LYS n 1 100 VAL n 1 101 SER n 1 102 ALA n 1 103 PRO n 1 104 LEU n 1 105 ILE n 1 106 ALA n 1 107 GLN n 1 108 GLN n 1 109 GLU n 1 110 GLU n 1 111 ASP n 1 112 PRO n 1 113 ASN n 1 114 ALA n 1 115 PRO n 1 116 ILE n 1 117 ASP n 1 118 THR n 1 119 ASP n 1 120 ASN n 1 121 LEU n 1 122 THR n 1 123 GLN n 1 124 ARG n 1 125 LEU n 1 126 HIS n 1 127 ASN n 1 128 PHE n 1 129 THR n 1 130 LYS n 1 131 THR n 1 132 TYR n 1 133 ASP n 1 134 LEU n 1 135 VAL n 1 136 ILE n 1 137 VAL n 1 138 GLU n 1 139 GLY n 1 140 ALA n 1 141 GLY n 1 142 GLY n 1 143 LEU n 1 144 CYS n 1 145 VAL n 1 146 PRO n 1 147 ILE n 1 148 THR n 1 149 LEU n 1 150 GLU n 1 151 GLU n 1 152 ASN n 1 153 MET n 1 154 LEU n 1 155 ASP n 1 156 PHE n 1 157 ALA n 1 158 LEU n 1 159 LYS n 1 160 LEU n 1 161 LYS n 1 162 ALA n 1 163 LYS n 1 164 MET n 1 165 LEU n 1 166 LEU n 1 167 ILE n 1 168 SER n 1 169 HIS n 1 170 ASP n 1 171 ASN n 1 172 LEU n 1 173 GLY n 1 174 LEU n 1 175 ILE n 1 176 ASN n 1 177 ASP n 1 178 CYS n 1 179 LEU n 1 180 LEU n 1 181 ASN n 1 182 ASP n 1 183 PHE n 1 184 LEU n 1 185 LEU n 1 186 LYS n 1 187 SER n 1 188 HIS n 1 189 GLN n 1 190 LEU n 1 191 ASP n 1 192 TYR n 1 193 LYS n 1 194 ILE n 1 195 ALA n 1 196 ILE n 1 197 ASN n 1 198 LEU n 1 199 LYS n 1 200 GLY n 1 201 ASN n 1 202 ASN n 1 203 THR n 1 204 ALA n 1 205 PHE n 1 206 HIS n 1 207 SER n 1 208 ILE n 1 209 SER n 1 210 LEU n 1 211 PRO n 1 212 TYR n 1 213 ILE n 1 214 GLU n 1 215 LEU n 1 216 PHE n 1 217 ASN n 1 218 THR n 1 219 ARG n 1 220 SER n 1 221 ASN n 1 222 ASN n 1 223 PRO n 1 224 ILE n 1 225 VAL n 1 226 ILE n 1 227 PHE n 1 228 GLN n 1 229 GLN n 1 230 SER n 1 231 LEU n 1 232 LYS n 1 233 VAL n 1 234 LEU n 1 235 MET n 1 236 SER n 1 237 PHE n 1 238 ALA n 1 239 LEU n 1 240 LYS n 1 241 GLY n 1 242 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Campylobacter pylori' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'bioD, hp0029, HP_0029' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 26695 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 85962 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21 Gold(de3) Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name p11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BIOD_HELPY _struct_ref.pdbx_db_accession O24872 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSA PLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLND FLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QY0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 240 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O24872 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 218 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 218 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QY0 MET A 1 ? UNP O24872 ? ? 'expression tag' -21 1 1 3QY0 GLY A 2 ? UNP O24872 ? ? 'expression tag' -20 2 1 3QY0 SER A 3 ? UNP O24872 ? ? 'expression tag' -19 3 1 3QY0 SER A 4 ? UNP O24872 ? ? 'expression tag' -18 4 1 3QY0 HIS A 5 ? UNP O24872 ? ? 'expression tag' -17 5 1 3QY0 HIS A 6 ? UNP O24872 ? ? 'expression tag' -16 6 1 3QY0 HIS A 7 ? UNP O24872 ? ? 'expression tag' -15 7 1 3QY0 HIS A 8 ? UNP O24872 ? ? 'expression tag' -14 8 1 3QY0 HIS A 9 ? UNP O24872 ? ? 'expression tag' -13 9 1 3QY0 HIS A 10 ? UNP O24872 ? ? 'expression tag' -12 10 1 3QY0 SER A 11 ? UNP O24872 ? ? 'expression tag' -11 11 1 3QY0 SER A 12 ? UNP O24872 ? ? 'expression tag' -10 12 1 3QY0 GLY A 13 ? UNP O24872 ? ? 'expression tag' -9 13 1 3QY0 ARG A 14 ? UNP O24872 ? ? 'expression tag' -8 14 1 3QY0 GLU A 15 ? UNP O24872 ? ? 'expression tag' -7 15 1 3QY0 ASN A 16 ? UNP O24872 ? ? 'expression tag' -6 16 1 3QY0 LEU A 17 ? UNP O24872 ? ? 'expression tag' -5 17 1 3QY0 TYR A 18 ? UNP O24872 ? ? 'expression tag' -4 18 1 3QY0 PHE A 19 ? UNP O24872 ? ? 'expression tag' -3 19 1 3QY0 GLN A 20 ? UNP O24872 ? ? 'expression tag' -2 20 1 3QY0 GLY A 21 ? UNP O24872 ? ? 'expression tag' -1 21 1 3QY0 HIS A 22 ? UNP O24872 ? ? 'expression tag' 0 22 1 3QY0 GLY A 241 ? UNP O24872 ? ? 'expression tag' 219 23 1 3QY0 SER A 242 ? UNP O24872 ? ? 'expression tag' 220 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QY0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_percent_sol 35.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;20% PEG3350; 100 MM NH4NO3; 100 MM, BIS-TRIS; SOAKED WITH 10 MM GDP, 10 MM MGCL2; IN SITU PROTEOLYSIS - CHYMOTRYPSIN, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2008-07-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRROR _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 3QY0 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.60 _reflns.number_obs 27374 _reflns.number_all 27374 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value 0.062 _reflns.pdbx_netI_over_sigmaI 19.2 _reflns.B_iso_Wilson_estimate 15.4 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.454 _reflns_shell.pdbx_Rsym_value 0.454 _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1361 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3QY0 _refine.ls_number_reflns_obs 25825 _refine.ls_number_reflns_all 25825 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.72 _refine.ls_R_factor_obs 0.14091 _refine.ls_R_factor_all 0.14091 _refine.ls_R_factor_R_work 0.13925 _refine.ls_R_factor_R_free 0.17135 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1375 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.B_iso_mean 16.865 _refine.aniso_B[1][1] -0.61 _refine.aniso_B[2][2] 0.52 _refine.aniso_B[3][3] -0.08 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.44 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 2QMO' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.080 _refine.overall_SU_ML 0.050 _refine.overall_SU_B 3.051 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1751 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 88 _refine_hist.number_atoms_solvent 209 _refine_hist.number_atoms_total 2048 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.022 ? 1911 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1303 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.846 1.995 ? 2572 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.270 3.000 ? 3201 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.379 5.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.003 25.122 ? 82 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.142 15.000 ? 331 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.519 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.135 0.200 ? 299 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 2059 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.006 0.020 ? 352 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.122 1.500 ? 1150 'X-RAY DIFFRACTION' ? r_mcbond_other 0.229 1.500 ? 464 'X-RAY DIFFRACTION' ? r_mcangle_it 1.889 2.000 ? 1864 'X-RAY DIFFRACTION' ? r_scbond_it 2.854 3.000 ? 761 'X-RAY DIFFRACTION' ? r_scangle_it 4.524 4.500 ? 702 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.642 _refine_ls_shell.number_reflns_R_work 1899 _refine_ls_shell.R_factor_R_work 0.248 _refine_ls_shell.percent_reflns_obs 99.85 _refine_ls_shell.R_factor_R_free 0.240 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1899 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3QY0 _struct.title 'Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QY0 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;DTBS, dethiobiotin synthetase, Structural Genomics, PSI-BIOLOGY, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, LIGASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? Q N N 5 ? R N N 5 ? S N N 5 ? T N N 5 ? U N N 5 ? V N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 34 ? CYS A 49 ? GLY A 12 CYS A 27 1 ? 16 HELX_P HELX_P2 2 SER A 71 ? ARG A 81 ? SER A 49 ARG A 59 1 ? 11 HELX_P HELX_P3 3 THR A 88 ? SER A 93 ? THR A 66 SER A 71 1 ? 6 HELX_P HELX_P4 4 ALA A 102 ? ASP A 111 ? ALA A 80 ASP A 89 1 ? 10 HELX_P HELX_P5 5 ASP A 117 ? PHE A 128 ? ASP A 95 PHE A 106 1 ? 12 HELX_P HELX_P6 6 ASN A 152 ? LYS A 161 ? ASN A 130 LYS A 139 1 ? 10 HELX_P HELX_P7 7 GLY A 173 ? SER A 187 ? GLY A 151 SER A 165 1 ? 15 HELX_P HELX_P8 8 THR A 203 ? SER A 209 ? THR A 181 SER A 187 1 ? 7 HELX_P HELX_P9 9 SER A 209 ? SER A 220 ? SER A 187 SER A 198 1 ? 12 HELX_P HELX_P10 10 SER A 230 ? LYS A 240 ? SER A 208 LYS A 218 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A THR 36 OG1 ? ? ? 1_555 E MG . MG ? ? A THR 14 A MG 224 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc2 metalc ? ? A ASP 72 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 50 A MG 224 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc3 metalc ? ? A GLU 138 OE2 ? ? ? 1_555 E MG . MG ? ? A GLU 116 A MG 224 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc4 metalc ? ? B GDP . O1B ? ? ? 1_555 D MG . MG ? ? A GDP 221 A MG 223 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc5 metalc ? ? B GDP . O3B ? ? ? 1_555 E MG . MG ? ? A GDP 221 A MG 224 1_555 ? ? ? ? ? ? ? 1.977 ? ? metalc6 metalc ? ? C PO4 . O3 ? ? ? 1_555 D MG . MG ? ? A PO4 222 A MG 223 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc7 metalc ? ? C PO4 . O1 ? ? ? 1_555 D MG . MG ? ? A PO4 222 A MG 223 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc8 metalc ? ? C PO4 . O1 ? ? ? 1_555 E MG . MG ? ? A PO4 222 A MG 224 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 223 A HOH 270 1_555 ? ? ? ? ? ? ? 2.487 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 223 A HOH 420 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 223 A HOH 429 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 223 A HOH 430 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 224 A HOH 270 1_555 ? ? ? ? ? ? ? 2.133 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 53 ? LEU A 56 ? THR A 31 LEU A 34 A 2 LEU A 134 ? GLU A 138 ? LEU A 112 GLU A 116 A 3 HIS A 22 ? ALA A 28 ? HIS A 0 ALA A 6 A 4 LYS A 163 ? SER A 168 ? LYS A 141 SER A 146 A 5 TYR A 192 ? ILE A 196 ? TYR A 170 ILE A 174 A 6 VAL A 225 ? ILE A 226 ? VAL A 203 ILE A 204 B 1 ILE A 59 ? GLU A 60 ? ILE A 37 GLU A 38 B 2 TYR A 95 ? ARG A 96 ? TYR A 73 ARG A 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 56 ? N LEU A 34 O ILE A 136 ? O ILE A 114 A 2 3 O VAL A 137 ? O VAL A 115 N ILE A 26 ? N ILE A 4 A 3 4 N PHE A 25 ? N PHE A 3 O LYS A 163 ? O LYS A 141 A 4 5 N LEU A 166 ? N LEU A 144 O LYS A 193 ? O LYS A 171 A 5 6 N ILE A 196 ? N ILE A 174 O VAL A 225 ? O VAL A 203 B 1 2 N GLU A 60 ? N GLU A 38 O TYR A 95 ? O TYR A 73 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDP 221 ? 15 'BINDING SITE FOR RESIDUE GDP A 221' AC2 Software A PO4 222 ? 13 'BINDING SITE FOR RESIDUE PO4 A 222' AC3 Software A MG 223 ? 8 'BINDING SITE FOR RESIDUE MG A 223' AC4 Software A MG 224 ? 7 'BINDING SITE FOR RESIDUE MG A 224' AC5 Software A EDO 225 ? 5 'BINDING SITE FOR RESIDUE EDO A 225' AC6 Software A EDO 226 ? 6 'BINDING SITE FOR RESIDUE EDO A 226' AC7 Software A EDO 227 ? 6 'BINDING SITE FOR RESIDUE EDO A 227' AC8 Software A EDO 228 ? 5 'BINDING SITE FOR RESIDUE EDO A 228' AC9 Software A EDO 229 ? 6 'BINDING SITE FOR RESIDUE EDO A 229' BC1 Software A EDO 230 ? 6 'BINDING SITE FOR RESIDUE EDO A 230' BC2 Software A EDO 231 ? 4 'BINDING SITE FOR RESIDUE EDO A 231' BC3 Software A EDO 232 ? 8 'BINDING SITE FOR RESIDUE EDO A 232' BC4 Software A EDO 233 ? 4 'BINDING SITE FOR RESIDUE EDO A 233' BC5 Software A EDO 234 ? 2 'BINDING SITE FOR RESIDUE EDO A 234' BC6 Software A EDO 235 ? 4 'BINDING SITE FOR RESIDUE EDO A 235' BC7 Software A EDO 236 ? 5 'BINDING SITE FOR RESIDUE EDO A 236' BC8 Software A EDO 237 ? 6 'BINDING SITE FOR RESIDUE EDO A 237' BC9 Software A EDO 238 ? 6 'BINDING SITE FOR RESIDUE EDO A 238' CC1 Software A EDO 239 ? 5 'BINDING SITE FOR RESIDUE EDO A 239' CC2 Software A EDO 240 ? 5 'BINDING SITE FOR RESIDUE EDO A 240' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 ASN A 32 ? ASN A 10 . ? 1_555 ? 2 AC1 15 ALA A 33 ? ALA A 11 . ? 1_555 ? 3 AC1 15 GLY A 34 ? GLY A 12 . ? 1_555 ? 4 AC1 15 LYS A 35 ? LYS A 13 . ? 1_555 ? 5 AC1 15 THR A 36 ? THR A 14 . ? 1_555 ? 6 AC1 15 THR A 37 ? THR A 15 . ? 1_555 ? 7 AC1 15 GLU A 138 ? GLU A 116 . ? 1_555 ? 8 AC1 15 GLN A 189 ? GLN A 167 . ? 1_545 ? 9 AC1 15 PO4 C . ? PO4 A 222 . ? 1_555 ? 10 AC1 15 MG D . ? MG A 223 . ? 1_555 ? 11 AC1 15 MG E . ? MG A 224 . ? 1_555 ? 12 AC1 15 HOH V . ? HOH A 270 . ? 1_555 ? 13 AC1 15 HOH V . ? HOH A 326 . ? 1_555 ? 14 AC1 15 HOH V . ? HOH A 338 . ? 1_555 ? 15 AC1 15 HOH V . ? HOH A 420 . ? 1_555 ? 16 AC2 13 THR A 31 ? THR A 9 . ? 1_555 ? 17 AC2 13 LYS A 35 ? LYS A 13 . ? 1_555 ? 18 AC2 13 LYS A 57 ? LYS A 35 . ? 1_555 ? 19 AC2 13 ASP A 72 ? ASP A 50 . ? 1_555 ? 20 AC2 13 GLU A 138 ? GLU A 116 . ? 1_555 ? 21 AC2 13 GLY A 141 ? GLY A 119 . ? 1_555 ? 22 AC2 13 GDP B . ? GDP A 221 . ? 1_555 ? 23 AC2 13 MG D . ? MG A 223 . ? 1_555 ? 24 AC2 13 MG E . ? MG A 224 . ? 1_555 ? 25 AC2 13 HOH V . ? HOH A 270 . ? 1_555 ? 26 AC2 13 HOH V . ? HOH A 413 . ? 1_555 ? 27 AC2 13 HOH V . ? HOH A 429 . ? 1_555 ? 28 AC2 13 HOH V . ? HOH A 430 . ? 1_555 ? 29 AC3 8 THR A 31 ? THR A 9 . ? 1_555 ? 30 AC3 8 GDP B . ? GDP A 221 . ? 1_555 ? 31 AC3 8 PO4 C . ? PO4 A 222 . ? 1_555 ? 32 AC3 8 MG E . ? MG A 224 . ? 1_555 ? 33 AC3 8 HOH V . ? HOH A 270 . ? 1_555 ? 34 AC3 8 HOH V . ? HOH A 420 . ? 1_555 ? 35 AC3 8 HOH V . ? HOH A 429 . ? 1_555 ? 36 AC3 8 HOH V . ? HOH A 430 . ? 1_555 ? 37 AC4 7 THR A 36 ? THR A 14 . ? 1_555 ? 38 AC4 7 ASP A 72 ? ASP A 50 . ? 1_555 ? 39 AC4 7 GLU A 138 ? GLU A 116 . ? 1_555 ? 40 AC4 7 GDP B . ? GDP A 221 . ? 1_555 ? 41 AC4 7 PO4 C . ? PO4 A 222 . ? 1_555 ? 42 AC4 7 MG D . ? MG A 223 . ? 1_555 ? 43 AC4 7 HOH V . ? HOH A 270 . ? 1_555 ? 44 AC5 5 ASN A 152 ? ASN A 130 . ? 1_555 ? 45 AC5 5 LEU A 154 ? LEU A 132 . ? 1_555 ? 46 AC5 5 ASP A 155 ? ASP A 133 . ? 1_555 ? 47 AC5 5 EDO T . ? EDO A 239 . ? 1_555 ? 48 AC5 5 HOH V . ? HOH A 315 . ? 1_555 ? 49 AC6 6 PHE A 94 ? PHE A 72 . ? 1_555 ? 50 AC6 6 TYR A 95 ? TYR A 73 . ? 1_555 ? 51 AC6 6 ARG A 96 ? ARG A 74 . ? 1_555 ? 52 AC6 6 TYR A 97 ? TYR A 75 . ? 1_555 ? 53 AC6 6 ASP A 111 ? ASP A 89 . ? 1_555 ? 54 AC6 6 HOH V . ? HOH A 436 . ? 1_555 ? 55 AC7 6 LYS A 193 ? LYS A 171 . ? 4_544 ? 56 AC7 6 HIS A 206 ? HIS A 184 . ? 1_555 ? 57 AC7 6 ASN A 222 ? ASN A 200 . ? 4_544 ? 58 AC7 6 PRO A 223 ? PRO A 201 . ? 4_544 ? 59 AC7 6 HOH V . ? HOH A 262 . ? 1_555 ? 60 AC7 6 HOH V . ? HOH A 383 . ? 1_555 ? 61 AC8 5 THR A 61 ? THR A 39 . ? 1_555 ? 62 AC8 5 SER A 101 ? SER A 79 . ? 1_555 ? 63 AC8 5 PRO A 103 ? PRO A 81 . ? 1_555 ? 64 AC8 5 GLY A 141 ? GLY A 119 . ? 1_555 ? 65 AC8 5 VAL A 145 ? VAL A 123 . ? 1_555 ? 66 AC9 6 LYS A 161 ? LYS A 139 . ? 1_555 ? 67 AC9 6 ALA A 162 ? ALA A 140 . ? 1_555 ? 68 AC9 6 LYS A 163 ? LYS A 141 . ? 1_555 ? 69 AC9 6 LEU A 190 ? LEU A 168 . ? 1_555 ? 70 AC9 6 ASP A 191 ? ASP A 169 . ? 1_555 ? 71 AC9 6 HOH V . ? HOH A 390 . ? 1_555 ? 72 BC1 6 GLY A 200 ? GLY A 178 . ? 4_554 ? 73 BC1 6 THR A 203 ? THR A 181 . ? 4_554 ? 74 BC1 6 ASN A 217 ? ASN A 195 . ? 1_555 ? 75 BC1 6 ASN A 221 ? ASN A 199 . ? 4_544 ? 76 BC1 6 GLN A 229 ? GLN A 207 . ? 1_555 ? 77 BC1 6 HOH V . ? HOH A 244 . ? 1_555 ? 78 BC2 4 ASN A 64 ? ASN A 42 . ? 1_555 ? 79 BC2 4 ASP A 65 ? ASP A 43 . ? 1_555 ? 80 BC2 4 ARG A 96 ? ARG A 74 . ? 1_555 ? 81 BC2 4 HIS A 98 ? HIS A 76 . ? 1_555 ? 82 BC3 8 THR A 29 ? THR A 7 . ? 1_555 ? 83 BC3 8 ASN A 30 ? ASN A 8 . ? 1_555 ? 84 BC3 8 THR A 31 ? THR A 9 . ? 1_555 ? 85 BC3 8 GLY A 141 ? GLY A 119 . ? 1_555 ? 86 BC3 8 GLY A 173 ? GLY A 151 . ? 2_554 ? 87 BC3 8 ASN A 176 ? ASN A 154 . ? 2_554 ? 88 BC3 8 ASP A 177 ? ASP A 155 . ? 2_554 ? 89 BC3 8 HOH V . ? HOH A 290 . ? 1_555 ? 90 BC4 4 ASN A 47 ? ASN A 25 . ? 1_555 ? 91 BC4 4 GLY A 50 ? GLY A 28 . ? 1_555 ? 92 BC4 4 LEU A 83 ? LEU A 61 . ? 1_555 ? 93 BC4 4 HOH V . ? HOH A 428 . ? 1_555 ? 94 BC5 2 GLN A 44 ? GLN A 22 . ? 1_555 ? 95 BC5 2 ASP A 79 ? ASP A 57 . ? 1_555 ? 96 BC6 4 TYR A 95 ? TYR A 73 . ? 1_555 ? 97 BC6 4 ALA A 114 ? ALA A 92 . ? 1_555 ? 98 BC6 4 PRO A 115 ? PRO A 93 . ? 1_555 ? 99 BC6 4 HOH V . ? HOH A 398 . ? 1_555 ? 100 BC7 5 HIS A 22 ? HIS A 0 . ? 1_555 ? 101 BC7 5 MET A 23 ? MET A 1 . ? 1_555 ? 102 BC7 5 LYS A 161 ? LYS A 139 . ? 1_555 ? 103 BC7 5 LYS A 163 ? LYS A 141 . ? 1_555 ? 104 BC7 5 SER A 242 ? SER A 220 . ? 1_555 ? 105 BC8 6 CYS A 144 ? CYS A 122 . ? 2_554 ? 106 BC8 6 ASN A 152 ? ASN A 130 . ? 2_554 ? 107 BC8 6 LEU A 179 ? LEU A 157 . ? 1_555 ? 108 BC8 6 TYR A 212 ? TYR A 190 . ? 1_555 ? 109 BC8 6 HOH V . ? HOH A 315 . ? 2_554 ? 110 BC8 6 HOH V . ? HOH A 356 . ? 2_554 ? 111 BC9 6 PHE A 19 ? PHE A -3 . ? 1_555 ? 112 BC9 6 HIS A 22 ? HIS A 0 . ? 1_555 ? 113 BC9 6 GLU A 109 ? GLU A 87 . ? 3_555 ? 114 BC9 6 GLU A 110 ? GLU A 88 . ? 3_555 ? 115 BC9 6 LEU A 239 ? LEU A 217 . ? 1_555 ? 116 BC9 6 GLY A 241 ? GLY A 219 . ? 1_555 ? 117 CC1 5 LEU A 179 ? LEU A 157 . ? 2_554 ? 118 CC1 5 ASP A 182 ? ASP A 160 . ? 2_554 ? 119 CC1 5 PHE A 183 ? PHE A 161 . ? 2_554 ? 120 CC1 5 LYS A 186 ? LYS A 164 . ? 2_554 ? 121 CC1 5 EDO F . ? EDO A 225 . ? 1_555 ? 122 CC2 5 SER A 86 ? SER A 64 . ? 2_555 ? 123 CC2 5 ASP A 111 ? ASP A 89 . ? 1_555 ? 124 CC2 5 PRO A 112 ? PRO A 90 . ? 1_555 ? 125 CC2 5 ASN A 113 ? ASN A 91 . ? 1_555 ? 126 CC2 5 HOH V . ? HOH A 340 . ? 2_555 ? # _database_PDB_matrix.entry_id 3QY0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QY0 _atom_sites.fract_transf_matrix[1][1] 0.012237 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002481 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026779 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014761 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 SER 3 -19 ? ? ? A . n A 1 4 SER 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 SER 11 -11 ? ? ? A . n A 1 12 SER 12 -10 ? ? ? A . n A 1 13 GLY 13 -9 ? ? ? A . n A 1 14 ARG 14 -8 ? ? ? A . n A 1 15 GLU 15 -7 ? ? ? A . n A 1 16 ASN 16 -6 ? ? ? A . n A 1 17 LEU 17 -5 ? ? ? A . n A 1 18 TYR 18 -4 ? ? ? A . n A 1 19 PHE 19 -3 -3 PHE PHE A . n A 1 20 GLN 20 -2 -2 GLN GLN A . n A 1 21 GLY 21 -1 -1 GLY GLY A . n A 1 22 HIS 22 0 0 HIS HIS A . n A 1 23 MET 23 1 1 MET MET A . n A 1 24 LEU 24 2 2 LEU LEU A . n A 1 25 PHE 25 3 3 PHE PHE A . n A 1 26 ILE 26 4 4 ILE ILE A . n A 1 27 SER 27 5 5 SER SER A . n A 1 28 ALA 28 6 6 ALA ALA A . n A 1 29 THR 29 7 7 THR THR A . n A 1 30 ASN 30 8 8 ASN ASN A . n A 1 31 THR 31 9 9 THR THR A . n A 1 32 ASN 32 10 10 ASN ASN A . n A 1 33 ALA 33 11 11 ALA ALA A . n A 1 34 GLY 34 12 12 GLY GLY A . n A 1 35 LYS 35 13 13 LYS LYS A . n A 1 36 THR 36 14 14 THR THR A . n A 1 37 THR 37 15 15 THR THR A . n A 1 38 CYS 38 16 16 CYS CYS A . n A 1 39 ALA 39 17 17 ALA ALA A . n A 1 40 ARG 40 18 18 ARG ARG A . n A 1 41 LEU 41 19 19 LEU LEU A . n A 1 42 LEU 42 20 20 LEU LEU A . n A 1 43 ALA 43 21 21 ALA ALA A . n A 1 44 GLN 44 22 22 GLN GLN A . n A 1 45 TYR 45 23 23 TYR TYR A . n A 1 46 CYS 46 24 24 CYS CYS A . n A 1 47 ASN 47 25 25 ASN ASN A . n A 1 48 ALA 48 26 26 ALA ALA A . n A 1 49 CYS 49 27 27 CYS CYS A . n A 1 50 GLY 50 28 28 GLY GLY A . n A 1 51 VAL 51 29 29 VAL VAL A . n A 1 52 LYS 52 30 30 LYS LYS A . n A 1 53 THR 53 31 31 THR THR A . n A 1 54 ILE 54 32 32 ILE ILE A . n A 1 55 LEU 55 33 33 LEU LEU A . n A 1 56 LEU 56 34 34 LEU LEU A . n A 1 57 LYS 57 35 35 LYS LYS A . n A 1 58 PRO 58 36 36 PRO PRO A . n A 1 59 ILE 59 37 37 ILE ILE A . n A 1 60 GLU 60 38 38 GLU GLU A . n A 1 61 THR 61 39 39 THR THR A . n A 1 62 GLY 62 40 40 GLY GLY A . n A 1 63 VAL 63 41 41 VAL VAL A . n A 1 64 ASN 64 42 42 ASN ASN A . n A 1 65 ASP 65 43 43 ASP ASP A . n A 1 66 ALA 66 44 44 ALA ALA A . n A 1 67 ILE 67 45 45 ILE ILE A . n A 1 68 ASN 68 46 46 ASN ASN A . n A 1 69 HIS 69 47 47 HIS HIS A . n A 1 70 SER 70 48 48 SER SER A . n A 1 71 SER 71 49 49 SER SER A . n A 1 72 ASP 72 50 50 ASP ASP A . n A 1 73 ALA 73 51 51 ALA ALA A . n A 1 74 HIS 74 52 52 HIS HIS A . n A 1 75 LEU 75 53 53 LEU LEU A . n A 1 76 PHE 76 54 54 PHE PHE A . n A 1 77 LEU 77 55 55 LEU LEU A . n A 1 78 GLN 78 56 56 GLN GLN A . n A 1 79 ASP 79 57 57 ASP ASP A . n A 1 80 ASN 80 58 58 ASN ASN A . n A 1 81 ARG 81 59 59 ARG ARG A . n A 1 82 LEU 82 60 60 LEU LEU A . n A 1 83 LEU 83 61 61 LEU LEU A . n A 1 84 ASP 84 62 62 ASP ASP A . n A 1 85 ARG 85 63 63 ARG ARG A . n A 1 86 SER 86 64 64 SER SER A . n A 1 87 LEU 87 65 65 LEU LEU A . n A 1 88 THR 88 66 66 THR THR A . n A 1 89 LEU 89 67 67 LEU LEU A . n A 1 90 LYS 90 68 68 LYS LYS A . n A 1 91 ASP 91 69 69 ASP ASP A . n A 1 92 ILE 92 70 70 ILE ILE A . n A 1 93 SER 93 71 71 SER SER A . n A 1 94 PHE 94 72 72 PHE PHE A . n A 1 95 TYR 95 73 73 TYR TYR A . n A 1 96 ARG 96 74 74 ARG ARG A . n A 1 97 TYR 97 75 75 TYR TYR A . n A 1 98 HIS 98 76 76 HIS HIS A . n A 1 99 LYS 99 77 77 LYS LYS A . n A 1 100 VAL 100 78 78 VAL VAL A . n A 1 101 SER 101 79 79 SER SER A . n A 1 102 ALA 102 80 80 ALA ALA A . n A 1 103 PRO 103 81 81 PRO PRO A . n A 1 104 LEU 104 82 82 LEU LEU A . n A 1 105 ILE 105 83 83 ILE ILE A . n A 1 106 ALA 106 84 84 ALA ALA A . n A 1 107 GLN 107 85 85 GLN GLN A . n A 1 108 GLN 108 86 86 GLN GLN A . n A 1 109 GLU 109 87 87 GLU GLU A . n A 1 110 GLU 110 88 88 GLU GLU A . n A 1 111 ASP 111 89 89 ASP ASP A . n A 1 112 PRO 112 90 90 PRO PRO A . n A 1 113 ASN 113 91 91 ASN ASN A . n A 1 114 ALA 114 92 92 ALA ALA A . n A 1 115 PRO 115 93 93 PRO PRO A . n A 1 116 ILE 116 94 94 ILE ILE A . n A 1 117 ASP 117 95 95 ASP ASP A . n A 1 118 THR 118 96 96 THR THR A . n A 1 119 ASP 119 97 97 ASP ASP A . n A 1 120 ASN 120 98 98 ASN ASN A . n A 1 121 LEU 121 99 99 LEU LEU A . n A 1 122 THR 122 100 100 THR THR A . n A 1 123 GLN 123 101 101 GLN GLN A . n A 1 124 ARG 124 102 102 ARG ARG A . n A 1 125 LEU 125 103 103 LEU LEU A . n A 1 126 HIS 126 104 104 HIS HIS A . n A 1 127 ASN 127 105 105 ASN ASN A . n A 1 128 PHE 128 106 106 PHE PHE A . n A 1 129 THR 129 107 107 THR THR A . n A 1 130 LYS 130 108 108 LYS LYS A . n A 1 131 THR 131 109 109 THR THR A . n A 1 132 TYR 132 110 110 TYR TYR A . n A 1 133 ASP 133 111 111 ASP ASP A . n A 1 134 LEU 134 112 112 LEU LEU A . n A 1 135 VAL 135 113 113 VAL VAL A . n A 1 136 ILE 136 114 114 ILE ILE A . n A 1 137 VAL 137 115 115 VAL VAL A . n A 1 138 GLU 138 116 116 GLU GLU A . n A 1 139 GLY 139 117 117 GLY GLY A . n A 1 140 ALA 140 118 118 ALA ALA A . n A 1 141 GLY 141 119 119 GLY GLY A . n A 1 142 GLY 142 120 120 GLY GLY A . n A 1 143 LEU 143 121 121 LEU LEU A . n A 1 144 CYS 144 122 122 CYS CYS A . n A 1 145 VAL 145 123 123 VAL VAL A . n A 1 146 PRO 146 124 124 PRO PRO A . n A 1 147 ILE 147 125 125 ILE ILE A . n A 1 148 THR 148 126 126 THR THR A . n A 1 149 LEU 149 127 127 LEU LEU A . n A 1 150 GLU 150 128 128 GLU GLU A . n A 1 151 GLU 151 129 129 GLU GLU A . n A 1 152 ASN 152 130 130 ASN ASN A . n A 1 153 MET 153 131 131 MET MET A . n A 1 154 LEU 154 132 132 LEU LEU A . n A 1 155 ASP 155 133 133 ASP ASP A . n A 1 156 PHE 156 134 134 PHE PHE A . n A 1 157 ALA 157 135 135 ALA ALA A . n A 1 158 LEU 158 136 136 LEU LEU A . n A 1 159 LYS 159 137 137 LYS LYS A . n A 1 160 LEU 160 138 138 LEU LEU A . n A 1 161 LYS 161 139 139 LYS LYS A . n A 1 162 ALA 162 140 140 ALA ALA A . n A 1 163 LYS 163 141 141 LYS LYS A . n A 1 164 MET 164 142 142 MET MET A . n A 1 165 LEU 165 143 143 LEU LEU A . n A 1 166 LEU 166 144 144 LEU LEU A . n A 1 167 ILE 167 145 145 ILE ILE A . n A 1 168 SER 168 146 146 SER SER A . n A 1 169 HIS 169 147 147 HIS HIS A . n A 1 170 ASP 170 148 148 ASP ASP A . n A 1 171 ASN 171 149 149 ASN ASN A . n A 1 172 LEU 172 150 150 LEU LEU A . n A 1 173 GLY 173 151 151 GLY GLY A . n A 1 174 LEU 174 152 152 LEU LEU A . n A 1 175 ILE 175 153 153 ILE ILE A . n A 1 176 ASN 176 154 154 ASN ASN A . n A 1 177 ASP 177 155 155 ASP ASP A . n A 1 178 CYS 178 156 156 CYS CYS A . n A 1 179 LEU 179 157 157 LEU LEU A . n A 1 180 LEU 180 158 158 LEU LEU A . n A 1 181 ASN 181 159 159 ASN ASN A . n A 1 182 ASP 182 160 160 ASP ASP A . n A 1 183 PHE 183 161 161 PHE PHE A . n A 1 184 LEU 184 162 162 LEU LEU A . n A 1 185 LEU 185 163 163 LEU LEU A . n A 1 186 LYS 186 164 164 LYS LYS A . n A 1 187 SER 187 165 165 SER SER A . n A 1 188 HIS 188 166 166 HIS HIS A . n A 1 189 GLN 189 167 167 GLN GLN A . n A 1 190 LEU 190 168 168 LEU LEU A . n A 1 191 ASP 191 169 169 ASP ASP A . n A 1 192 TYR 192 170 170 TYR TYR A . n A 1 193 LYS 193 171 171 LYS LYS A . n A 1 194 ILE 194 172 172 ILE ILE A . n A 1 195 ALA 195 173 173 ALA ALA A . n A 1 196 ILE 196 174 174 ILE ILE A . n A 1 197 ASN 197 175 175 ASN ASN A . n A 1 198 LEU 198 176 176 LEU LEU A . n A 1 199 LYS 199 177 177 LYS LYS A . n A 1 200 GLY 200 178 178 GLY GLY A . n A 1 201 ASN 201 179 179 ASN ASN A . n A 1 202 ASN 202 180 180 ASN ASN A . n A 1 203 THR 203 181 181 THR THR A . n A 1 204 ALA 204 182 182 ALA ALA A . n A 1 205 PHE 205 183 183 PHE PHE A . n A 1 206 HIS 206 184 184 HIS HIS A . n A 1 207 SER 207 185 185 SER SER A . n A 1 208 ILE 208 186 186 ILE ILE A . n A 1 209 SER 209 187 187 SER SER A . n A 1 210 LEU 210 188 188 LEU LEU A . n A 1 211 PRO 211 189 189 PRO PRO A . n A 1 212 TYR 212 190 190 TYR TYR A . n A 1 213 ILE 213 191 191 ILE ILE A . n A 1 214 GLU 214 192 192 GLU GLU A . n A 1 215 LEU 215 193 193 LEU LEU A . n A 1 216 PHE 216 194 194 PHE PHE A . n A 1 217 ASN 217 195 195 ASN ASN A . n A 1 218 THR 218 196 196 THR THR A . n A 1 219 ARG 219 197 197 ARG ARG A . n A 1 220 SER 220 198 198 SER SER A . n A 1 221 ASN 221 199 199 ASN ASN A . n A 1 222 ASN 222 200 200 ASN ASN A . n A 1 223 PRO 223 201 201 PRO PRO A . n A 1 224 ILE 224 202 202 ILE ILE A . n A 1 225 VAL 225 203 203 VAL VAL A . n A 1 226 ILE 226 204 204 ILE ILE A . n A 1 227 PHE 227 205 205 PHE PHE A . n A 1 228 GLN 228 206 206 GLN GLN A . n A 1 229 GLN 229 207 207 GLN GLN A . n A 1 230 SER 230 208 208 SER SER A . n A 1 231 LEU 231 209 209 LEU LEU A . n A 1 232 LYS 232 210 210 LYS LYS A . n A 1 233 VAL 233 211 211 VAL VAL A . n A 1 234 LEU 234 212 212 LEU LEU A . n A 1 235 MET 235 213 213 MET MET A . n A 1 236 SER 236 214 214 SER SER A . n A 1 237 PHE 237 215 215 PHE PHE A . n A 1 238 ALA 238 216 216 ALA ALA A . n A 1 239 LEU 239 217 217 LEU LEU A . n A 1 240 LYS 240 218 218 LYS LYS A . n A 1 241 GLY 241 219 219 GLY GLY A . n A 1 242 SER 242 220 220 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 221 1 GDP GDP A . C 3 PO4 1 222 2 PO4 PO4 A . D 4 MG 1 223 3 MG MG A . E 4 MG 1 224 4 MG MG A . F 5 EDO 1 225 1 EDO EDO A . G 5 EDO 1 226 6 EDO EDO A . H 5 EDO 1 227 5 EDO EDO A . I 5 EDO 1 228 1 EDO EDO A . J 5 EDO 1 229 1 EDO EDO A . K 5 EDO 1 230 1 EDO EDO A . L 5 EDO 1 231 2 EDO EDO A . M 5 EDO 1 232 1 EDO EDO A . N 5 EDO 1 233 3 EDO EDO A . O 5 EDO 1 234 7 EDO EDO A . P 5 EDO 1 235 8 EDO EDO A . Q 5 EDO 1 236 4 EDO EDO A . R 5 EDO 1 237 1 EDO EDO A . S 5 EDO 1 238 10 EDO EDO A . T 5 EDO 1 239 12 EDO EDO A . U 5 EDO 1 240 1 EDO EDO A . V 6 HOH 1 241 241 HOH HOH A . V 6 HOH 2 242 1 HOH HOH A . V 6 HOH 3 243 2 HOH HOH A . V 6 HOH 4 244 3 HOH HOH A . V 6 HOH 5 245 245 HOH HOH A . V 6 HOH 6 246 4 HOH HOH A . V 6 HOH 7 247 5 HOH HOH A . V 6 HOH 8 248 248 HOH HOH A . V 6 HOH 9 249 6 HOH HOH A . V 6 HOH 10 250 7 HOH HOH A . V 6 HOH 11 251 9 HOH HOH A . V 6 HOH 12 252 252 HOH HOH A . V 6 HOH 13 253 253 HOH HOH A . V 6 HOH 14 254 254 HOH HOH A . V 6 HOH 15 255 10 HOH HOH A . V 6 HOH 16 256 11 HOH HOH A . V 6 HOH 17 257 12 HOH HOH A . V 6 HOH 18 258 13 HOH HOH A . V 6 HOH 19 259 259 HOH HOH A . V 6 HOH 20 260 260 HOH HOH A . V 6 HOH 21 261 14 HOH HOH A . V 6 HOH 22 262 262 HOH HOH A . V 6 HOH 23 263 15 HOH HOH A . V 6 HOH 24 264 264 HOH HOH A . V 6 HOH 25 265 17 HOH HOH A . V 6 HOH 26 266 19 HOH HOH A . V 6 HOH 27 267 20 HOH HOH A . V 6 HOH 28 268 268 HOH HOH A . V 6 HOH 29 269 269 HOH HOH A . V 6 HOH 30 270 270 HOH HOH A . V 6 HOH 31 271 271 HOH HOH A . V 6 HOH 32 272 272 HOH HOH A . V 6 HOH 33 273 22 HOH HOH A . V 6 HOH 34 274 23 HOH HOH A . V 6 HOH 35 275 24 HOH HOH A . V 6 HOH 36 276 25 HOH HOH A . V 6 HOH 37 277 27 HOH HOH A . V 6 HOH 38 278 28 HOH HOH A . V 6 HOH 39 279 29 HOH HOH A . V 6 HOH 40 280 30 HOH HOH A . V 6 HOH 41 281 32 HOH HOH A . V 6 HOH 42 282 33 HOH HOH A . V 6 HOH 43 283 34 HOH HOH A . V 6 HOH 44 284 36 HOH HOH A . V 6 HOH 45 285 39 HOH HOH A . V 6 HOH 46 286 40 HOH HOH A . V 6 HOH 47 287 41 HOH HOH A . V 6 HOH 48 288 288 HOH HOH A . V 6 HOH 49 289 42 HOH HOH A . V 6 HOH 50 290 43 HOH HOH A . V 6 HOH 51 291 291 HOH HOH A . V 6 HOH 52 292 44 HOH HOH A . V 6 HOH 53 293 45 HOH HOH A . V 6 HOH 54 294 294 HOH HOH A . V 6 HOH 55 295 295 HOH HOH A . V 6 HOH 56 296 47 HOH HOH A . V 6 HOH 57 297 49 HOH HOH A . V 6 HOH 58 298 298 HOH HOH A . V 6 HOH 59 299 50 HOH HOH A . V 6 HOH 60 300 300 HOH HOH A . V 6 HOH 61 301 51 HOH HOH A . V 6 HOH 62 302 53 HOH HOH A . V 6 HOH 63 303 303 HOH HOH A . V 6 HOH 64 304 54 HOH HOH A . V 6 HOH 65 305 56 HOH HOH A . V 6 HOH 66 306 57 HOH HOH A . V 6 HOH 67 307 58 HOH HOH A . V 6 HOH 68 308 59 HOH HOH A . V 6 HOH 69 309 309 HOH HOH A . V 6 HOH 70 310 60 HOH HOH A . V 6 HOH 71 311 61 HOH HOH A . V 6 HOH 72 312 62 HOH HOH A . V 6 HOH 73 313 63 HOH HOH A . V 6 HOH 74 314 65 HOH HOH A . V 6 HOH 75 315 66 HOH HOH A . V 6 HOH 76 316 67 HOH HOH A . V 6 HOH 77 317 68 HOH HOH A . V 6 HOH 78 318 69 HOH HOH A . V 6 HOH 79 319 319 HOH HOH A . V 6 HOH 80 320 71 HOH HOH A . V 6 HOH 81 321 321 HOH HOH A . V 6 HOH 82 322 73 HOH HOH A . V 6 HOH 83 323 323 HOH HOH A . V 6 HOH 84 324 74 HOH HOH A . V 6 HOH 85 325 76 HOH HOH A . V 6 HOH 86 326 326 HOH HOH A . V 6 HOH 87 327 327 HOH HOH A . V 6 HOH 88 328 328 HOH HOH A . V 6 HOH 89 329 329 HOH HOH A . V 6 HOH 90 330 330 HOH HOH A . V 6 HOH 91 331 77 HOH HOH A . V 6 HOH 92 332 78 HOH HOH A . V 6 HOH 93 333 80 HOH HOH A . V 6 HOH 94 334 82 HOH HOH A . V 6 HOH 95 335 84 HOH HOH A . V 6 HOH 96 336 86 HOH HOH A . V 6 HOH 97 337 90 HOH HOH A . V 6 HOH 98 338 91 HOH HOH A . V 6 HOH 99 339 92 HOH HOH A . V 6 HOH 100 340 93 HOH HOH A . V 6 HOH 101 341 96 HOH HOH A . V 6 HOH 102 342 97 HOH HOH A . V 6 HOH 103 343 98 HOH HOH A . V 6 HOH 104 344 99 HOH HOH A . V 6 HOH 105 345 100 HOH HOH A . V 6 HOH 106 346 101 HOH HOH A . V 6 HOH 107 347 102 HOH HOH A . V 6 HOH 108 348 104 HOH HOH A . V 6 HOH 109 349 105 HOH HOH A . V 6 HOH 110 350 106 HOH HOH A . V 6 HOH 111 351 107 HOH HOH A . V 6 HOH 112 352 113 HOH HOH A . V 6 HOH 113 353 114 HOH HOH A . V 6 HOH 114 354 115 HOH HOH A . V 6 HOH 115 355 116 HOH HOH A . V 6 HOH 116 356 118 HOH HOH A . V 6 HOH 117 357 122 HOH HOH A . V 6 HOH 118 358 128 HOH HOH A . V 6 HOH 119 359 129 HOH HOH A . V 6 HOH 120 360 132 HOH HOH A . V 6 HOH 121 361 133 HOH HOH A . V 6 HOH 122 362 134 HOH HOH A . V 6 HOH 123 363 136 HOH HOH A . V 6 HOH 124 364 137 HOH HOH A . V 6 HOH 125 365 139 HOH HOH A . V 6 HOH 126 366 140 HOH HOH A . V 6 HOH 127 367 142 HOH HOH A . V 6 HOH 128 368 144 HOH HOH A . V 6 HOH 129 369 151 HOH HOH A . V 6 HOH 130 370 155 HOH HOH A . V 6 HOH 131 371 157 HOH HOH A . V 6 HOH 132 372 158 HOH HOH A . V 6 HOH 133 373 164 HOH HOH A . V 6 HOH 134 374 165 HOH HOH A . V 6 HOH 135 375 166 HOH HOH A . V 6 HOH 136 376 168 HOH HOH A . V 6 HOH 137 377 176 HOH HOH A . V 6 HOH 138 378 177 HOH HOH A . V 6 HOH 139 379 181 HOH HOH A . V 6 HOH 140 380 189 HOH HOH A . V 6 HOH 141 381 197 HOH HOH A . V 6 HOH 142 382 198 HOH HOH A . V 6 HOH 143 383 203 HOH HOH A . V 6 HOH 144 384 205 HOH HOH A . V 6 HOH 145 385 207 HOH HOH A . V 6 HOH 146 386 209 HOH HOH A . V 6 HOH 147 387 210 HOH HOH A . V 6 HOH 148 388 212 HOH HOH A . V 6 HOH 149 389 219 HOH HOH A . V 6 HOH 150 390 221 HOH HOH A . V 6 HOH 151 391 224 HOH HOH A . V 6 HOH 152 392 225 HOH HOH A . V 6 HOH 153 393 227 HOH HOH A . V 6 HOH 154 394 228 HOH HOH A . V 6 HOH 155 395 229 HOH HOH A . V 6 HOH 156 396 231 HOH HOH A . V 6 HOH 157 397 234 HOH HOH A . V 6 HOH 158 398 235 HOH HOH A . V 6 HOH 159 399 238 HOH HOH A . V 6 HOH 160 400 239 HOH HOH A . V 6 HOH 161 401 240 HOH HOH A . V 6 HOH 162 402 1 HOH HOH A . V 6 HOH 163 403 4 HOH HOH A . V 6 HOH 164 404 5 HOH HOH A . V 6 HOH 165 405 7 HOH HOH A . V 6 HOH 166 406 10 HOH HOH A . V 6 HOH 167 407 13 HOH HOH A . V 6 HOH 168 408 15 HOH HOH A . V 6 HOH 169 409 18 HOH HOH A . V 6 HOH 170 410 21 HOH HOH A . V 6 HOH 171 411 1 HOH HOH A . V 6 HOH 172 412 4 HOH HOH A . V 6 HOH 173 413 7 HOH HOH A . V 6 HOH 174 414 13 HOH HOH A . V 6 HOH 175 415 14 HOH HOH A . V 6 HOH 176 416 18 HOH HOH A . V 6 HOH 177 417 19 HOH HOH A . V 6 HOH 178 418 20 HOH HOH A . V 6 HOH 179 419 21 HOH HOH A . V 6 HOH 180 420 25 HOH HOH A . V 6 HOH 181 421 26 HOH HOH A . V 6 HOH 182 422 27 HOH HOH A . V 6 HOH 183 423 28 HOH HOH A . V 6 HOH 184 424 29 HOH HOH A . V 6 HOH 185 425 37 HOH HOH A . V 6 HOH 186 426 39 HOH HOH A . V 6 HOH 187 427 48 HOH HOH A . V 6 HOH 188 428 3 HOH HOH A . V 6 HOH 189 429 4 HOH HOH A . V 6 HOH 190 430 5 HOH HOH A . V 6 HOH 191 431 6 HOH HOH A . V 6 HOH 192 432 8 HOH HOH A . V 6 HOH 193 433 10 HOH HOH A . V 6 HOH 194 434 12 HOH HOH A . V 6 HOH 195 435 31 HOH HOH A . V 6 HOH 196 436 34 HOH HOH A . V 6 HOH 197 437 36 HOH HOH A . V 6 HOH 198 438 38 HOH HOH A . V 6 HOH 199 439 46 HOH HOH A . V 6 HOH 200 440 1 HOH HOH A . V 6 HOH 201 441 4 HOH HOH A . V 6 HOH 202 442 1 HOH HOH A . V 6 HOH 203 443 2 HOH HOH A . V 6 HOH 204 444 4 HOH HOH A . V 6 HOH 205 445 6 HOH HOH A . V 6 HOH 206 446 7 HOH HOH A . V 6 HOH 207 447 9 HOH HOH A . V 6 HOH 208 448 10 HOH HOH A . V 6 HOH 209 449 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9530 ? 1 MORE -31 ? 1 'SSA (A^2)' 19400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 13.7340155589 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -67.7468998673 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 296 ? V HOH . 2 1 A HOH 312 ? V HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 36 ? A THR 14 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 OD2 ? A ASP 72 ? A ASP 50 ? 1_555 84.2 ? 2 OG1 ? A THR 36 ? A THR 14 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 OE2 ? A GLU 138 ? A GLU 116 ? 1_555 85.0 ? 3 OD2 ? A ASP 72 ? A ASP 50 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 OE2 ? A GLU 138 ? A GLU 116 ? 1_555 90.3 ? 4 OG1 ? A THR 36 ? A THR 14 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O3B ? B GDP . ? A GDP 221 ? 1_555 92.7 ? 5 OD2 ? A ASP 72 ? A ASP 50 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O3B ? B GDP . ? A GDP 221 ? 1_555 169.4 ? 6 OE2 ? A GLU 138 ? A GLU 116 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O3B ? B GDP . ? A GDP 221 ? 1_555 99.6 ? 7 OG1 ? A THR 36 ? A THR 14 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O1 ? C PO4 . ? A PO4 222 ? 1_555 172.2 ? 8 OD2 ? A ASP 72 ? A ASP 50 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O1 ? C PO4 . ? A PO4 222 ? 1_555 92.0 ? 9 OE2 ? A GLU 138 ? A GLU 116 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O1 ? C PO4 . ? A PO4 222 ? 1_555 88.2 ? 10 O3B ? B GDP . ? A GDP 221 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O1 ? C PO4 . ? A PO4 222 ? 1_555 92.2 ? 11 OG1 ? A THR 36 ? A THR 14 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O ? V HOH . ? A HOH 270 ? 1_555 96.3 ? 12 OD2 ? A ASP 72 ? A ASP 50 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O ? V HOH . ? A HOH 270 ? 1_555 85.9 ? 13 OE2 ? A GLU 138 ? A GLU 116 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O ? V HOH . ? A HOH 270 ? 1_555 175.8 ? 14 O3B ? B GDP . ? A GDP 221 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O ? V HOH . ? A HOH 270 ? 1_555 84.3 ? 15 O1 ? C PO4 . ? A PO4 222 ? 1_555 MG ? E MG . ? A MG 224 ? 1_555 O ? V HOH . ? A HOH 270 ? 1_555 90.2 ? 16 O1B ? B GDP . ? A GDP 221 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O3 ? C PO4 . ? A PO4 222 ? 1_555 118.2 ? 17 O1B ? B GDP . ? A GDP 221 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O1 ? C PO4 . ? A PO4 222 ? 1_555 75.7 ? 18 O3 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O1 ? C PO4 . ? A PO4 222 ? 1_555 56.1 ? 19 O1B ? B GDP . ? A GDP 221 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 270 ? 1_555 80.9 ? 20 O3 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 270 ? 1_555 110.9 ? 21 O1 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 270 ? 1_555 69.5 ? 22 O1B ? B GDP . ? A GDP 221 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 420 ? 1_555 91.2 ? 23 O3 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 420 ? 1_555 148.8 ? 24 O1 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 420 ? 1_555 150.0 ? 25 O ? V HOH . ? A HOH 270 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 420 ? 1_555 82.0 ? 26 O1B ? B GDP . ? A GDP 221 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 429 ? 1_555 163.3 ? 27 O3 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 429 ? 1_555 74.8 ? 28 O1 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 429 ? 1_555 106.9 ? 29 O ? V HOH . ? A HOH 270 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 429 ? 1_555 84.6 ? 30 O ? V HOH . ? A HOH 420 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 429 ? 1_555 78.5 ? 31 O1B ? B GDP . ? A GDP 221 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 430 ? 1_555 99.6 ? 32 O3 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 430 ? 1_555 91.0 ? 33 O1 ? C PO4 . ? A PO4 222 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 430 ? 1_555 135.0 ? 34 O ? V HOH . ? A HOH 270 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 430 ? 1_555 155.1 ? 35 O ? V HOH . ? A HOH 420 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 430 ? 1_555 73.1 ? 36 O ? V HOH . ? A HOH 429 ? 1_555 MG ? D MG . ? A MG 223 ? 1_555 O ? V HOH . ? A HOH 430 ? 1_555 90.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-03-28 4 'Structure model' 1 3 2013-03-27 5 'Structure model' 1 4 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' audit_author 2 5 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_audit_author.identifier_ORCID' 2 5 'Structure model' '_citation_author.identifier_ORCID' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.value' 18 5 'Structure model' '_struct_conn.pdbx_dist_value' 19 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 5 'Structure model' '_struct_ref_seq_dif.details' 31 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 17.0170 -19.0110 -16.6130 0.0285 0.0806 0.0399 -0.0108 -0.0069 -0.0033 1.2000 1.1150 2.1378 0.0881 0.0940 0.2322 -0.0200 0.0427 -0.0197 0.0128 0.0107 0.0123 0.0863 0.0179 0.0093 'X-RAY DIFFRACTION' 2 ? refined 5.5330 -23.1520 -9.3520 0.0365 0.0633 0.0326 -0.0185 -0.0008 0.0057 2.0246 0.4989 0.8358 -0.2316 0.4708 0.1074 0.0089 -0.1335 -0.1427 0.0522 -0.0030 0.0566 0.1239 -0.0768 -0.0060 'X-RAY DIFFRACTION' 3 ? refined 8.5300 -13.4870 -12.2340 0.0392 0.0808 0.0488 -0.0104 -0.0070 -0.0051 1.9391 0.4107 1.6531 0.0506 1.3587 0.1530 0.0007 -0.1635 0.0880 0.0139 0.0093 0.0413 -0.0362 -0.1450 -0.0101 'X-RAY DIFFRACTION' 4 ? refined 13.0120 -13.3080 -26.9830 0.0445 0.0511 0.0505 -0.0078 -0.0205 -0.0004 0.7734 0.2832 1.1251 -0.1268 0.0854 -0.0547 0.0192 0.0201 0.0354 -0.0365 -0.0205 0.0256 -0.0646 -0.0016 0.0013 'X-RAY DIFFRACTION' 5 ? refined 24.1470 -17.8120 -30.1760 0.0425 0.0809 0.0749 -0.0032 -0.0105 -0.0014 0.8350 1.1627 2.5836 0.0654 0.5194 0.6496 0.0070 0.0093 0.0418 -0.0723 0.0233 0.0439 -0.0033 0.1269 -0.0302 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A -3 ? ? A 24 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 25 ? ? A 100 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 101 ? ? A 129 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 130 ? ? A 176 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 177 ? ? A 220 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 'data collection' . ? 1 HKL-3000 phasing . ? 2 MOLREP phasing . ? 3 REFMAC refinement 5.5 ? 4 Coot 'model building' . ? 5 HKL-3000 'data reduction' . ? 6 HKL-3000 'data scaling' . ? 7 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 199 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 444 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_554 _pdbx_validate_symm_contact.dist 2.15 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 119 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 119 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 119 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 129.95 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation 16.85 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 89 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -147.25 _pdbx_validate_torsion.psi 58.92 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 101 ? CD ? A GLN 123 CD 2 1 Y 1 A GLN 101 ? OE1 ? A GLN 123 OE1 3 1 Y 1 A GLN 101 ? NE2 ? A GLN 123 NE2 4 1 Y 1 A ASN 179 ? CG ? A ASN 201 CG 5 1 Y 1 A ASN 179 ? OD1 ? A ASN 201 OD1 6 1 Y 1 A ASN 179 ? ND2 ? A ASN 201 ND2 7 1 Y 1 A LYS 210 ? CE ? A LYS 232 CE 8 1 Y 1 A LYS 210 ? NZ ? A LYS 232 NZ 9 1 N 1 A GDP 221 ? N9 ? B GDP 1 N9 10 1 N 1 A GDP 221 ? C8 ? B GDP 1 C8 11 1 N 1 A GDP 221 ? N7 ? B GDP 1 N7 12 1 N 1 A GDP 221 ? C5 ? B GDP 1 C5 13 1 N 1 A GDP 221 ? C6 ? B GDP 1 C6 14 1 N 1 A GDP 221 ? O6 ? B GDP 1 O6 15 1 N 1 A GDP 221 ? N1 ? B GDP 1 N1 16 1 N 1 A GDP 221 ? C2 ? B GDP 1 C2 17 1 N 1 A GDP 221 ? N2 ? B GDP 1 N2 18 1 N 1 A GDP 221 ? N3 ? B GDP 1 N3 19 1 N 1 A GDP 221 ? C4 ? B GDP 1 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -21 ? A MET 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A SER -19 ? A SER 3 4 1 Y 1 A SER -18 ? A SER 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A SER -11 ? A SER 11 12 1 Y 1 A SER -10 ? A SER 12 13 1 Y 1 A GLY -9 ? A GLY 13 14 1 Y 1 A ARG -8 ? A ARG 14 15 1 Y 1 A GLU -7 ? A GLU 15 16 1 Y 1 A ASN -6 ? A ASN 16 17 1 Y 1 A LEU -5 ? A LEU 17 18 1 Y 1 A TYR -4 ? A TYR 18 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'PHOSPHATE ION' PO4 4 'MAGNESIUM ION' MG 5 1,2-ETHANEDIOL EDO 6 water HOH #